Wall clock time and date at job start Tue Mar 31 2020 17:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.69792 * 2 1 4 4 C 1.53192 * 109.58470 * 120.34997 * 2 1 3 5 5 C 1.53048 * 109.31025 * 174.42753 * 4 2 1 6 6 H 1.08995 * 109.46295 * 58.64156 * 5 4 2 7 7 N 1.46493 * 109.45802 * 178.61696 * 5 4 2 8 8 C 1.34784 * 119.99873 * 205.30062 * 7 5 4 9 9 O 1.21480 * 119.99738 * 359.71922 * 8 7 5 10 10 C 1.48449 * 119.99961 * 179.72304 * 8 7 5 11 11 C 1.39536 * 120.54879 * 179.72041 * 10 8 7 12 12 C 1.38770 * 118.26310 * 179.73747 * 11 10 8 13 13 N 1.32204 * 119.14720 * 0.53952 * 12 11 10 14 14 C 1.31885 * 121.03324 * 359.71888 * 13 12 11 15 15 C 1.50701 * 119.03865 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49693 * 8.65117 * 15 14 13 17 17 C 1.52992 * 59.99900 * 252.50584 * 16 15 14 18 18 N 1.31576 * 121.92067 * 0.02562 * 14 13 12 19 19 C 1.53047 * 109.52208 * 298.62371 * 5 4 2 20 20 C 1.53193 * 109.30953 * 61.39151 * 19 5 4 21 21 N 1.46922 * 109.58730 * 239.64101 * 2 1 3 22 22 C 1.36935 * 120.62977 * 6.62402 * 21 2 1 23 23 H 1.07995 * 120.00234 * 330.85222 * 22 21 2 24 24 C 1.38817 * 119.99809 * 150.84612 * 22 21 2 25 25 N 1.31622 * 120.00128 * 343.82094 * 24 22 21 26 26 Si 1.86801 * 119.99924 * 163.81072 * 24 22 21 27 27 H 1.48501 * 109.46823 * 94.31440 * 26 24 22 28 28 H 1.48495 * 109.47324 * 214.31339 * 26 24 22 29 29 H 1.48504 * 109.47033 * 334.31465 * 26 24 22 30 30 H 1.08997 * 109.46908 * 299.64987 * 1 2 3 31 31 H 1.08999 * 109.46988 * 59.64611 * 1 2 3 32 32 H 1.09000 * 109.46837 * 179.64812 * 1 2 3 33 33 H 1.08991 * 109.49811 * 54.47109 * 4 2 1 34 34 H 1.08997 * 109.49818 * 294.37159 * 4 2 1 35 35 H 0.96999 * 120.00425 * 25.01845 * 7 5 4 36 36 H 1.08002 * 120.86997 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.42058 * 180.26112 * 12 11 10 38 38 H 1.08995 * 115.54835 * 154.35302 * 15 14 13 39 39 H 1.09007 * 117.50138 * 359.97438 * 16 15 14 40 40 H 1.09005 * 117.50266 * 145.01478 * 16 15 14 41 41 H 1.09001 * 117.50219 * 252.50748 * 17 16 15 42 42 H 1.09004 * 117.49724 * 107.49075 * 17 16 15 43 43 H 1.08995 * 109.49258 * 181.32427 * 19 5 4 44 44 H 1.08993 * 109.50135 * 301.42594 * 19 5 4 45 45 H 1.08997 * 109.58394 * 185.56095 * 20 19 5 46 46 H 1.09004 * 109.71952 * 65.19575 * 20 19 5 47 47 H 0.96994 * 119.99600 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5676 -0.8478 1.1703 6 1 4.0062 0.1475 1.0992 7 7 4.0652 -1.5154 2.3755 8 6 5.3276 -1.2970 2.7944 9 8 6.0542 -0.5505 2.1696 10 6 5.8299 -1.9688 4.0192 11 6 7.1365 -1.7555 4.4599 12 6 7.5548 -2.4033 5.6136 13 7 6.7120 -3.2024 6.2450 14 6 5.4848 -3.3861 5.7980 15 6 4.5616 -4.3076 6.5528 16 6 5.0358 -4.8239 7.9128 17 6 4.9928 -5.7672 6.7090 18 7 5.0435 -2.7891 4.7117 19 6 3.9567 -1.6658 -0.0633 20 6 3.4652 -0.9470 -1.3236 21 7 2.0226 -0.6996 -1.1944 22 6 1.1538 -1.1128 -2.1688 23 1 0.1366 -1.3691 -1.9121 24 6 1.5805 -1.2022 -3.4867 25 7 2.6909 -0.6027 -3.8611 26 14 0.5791 -2.1737 -4.7289 27 1 -0.3431 -1.2572 -5.4464 28 1 1.4930 -2.8200 -5.7046 29 1 -0.2088 -3.2159 -4.0230 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.6030 -1.7251 1.2915 34 1 1.7660 -0.1666 2.1368 35 1 3.4850 -2.1115 2.8744 36 1 7.8036 -1.1003 3.9194 37 1 8.5576 -2.2598 5.9883 38 1 3.4969 -4.1073 6.4335 39 1 6.0156 -4.4975 8.2614 40 1 4.2829 -4.9634 8.6886 41 1 4.2118 -6.5273 6.6927 42 1 5.9443 -6.0610 6.2657 43 1 5.0409 -1.7699 -0.1035 44 1 3.4979 -2.6528 -0.0049 45 1 3.6519 -1.5718 -2.1969 46 1 3.9901 0.0019 -1.4341 47 1 2.9892 -0.6656 -4.7819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947766441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:22 Heat of formation + Delta-G solvation = 60.125338 kcal Electronic energy + Delta-G solvation = -27964.350427 eV Core-core repulsion = 24148.678637 eV Total energy + Delta-G solvation = -3815.671790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58190 -39.63338 -37.76395 -37.25608 -34.75717 -34.11675 -32.39557 -32.10075 -31.27132 -29.53763 -26.54203 -25.97249 -25.33981 -24.62822 -22.72406 -22.58505 -21.82473 -20.86075 -20.13844 -19.34912 -18.19423 -17.95122 -16.38116 -16.14717 -15.73815 -15.73175 -15.55479 -15.13794 -14.90545 -14.43234 -14.32417 -13.95955 -13.83133 -13.59808 -13.27505 -12.82771 -12.70985 -12.59623 -11.88394 -11.60680 -11.33975 -11.27399 -11.23168 -11.13970 -11.09559 -10.93393 -10.91801 -10.83124 -10.64702 -10.39965 -10.33087 -10.12238 -10.04179 -9.74618 -9.66077 -9.62944 -9.35945 -8.76899 -8.42492 -6.64296 -5.76949 -3.20123 0.24188 0.57536 2.63182 2.96107 3.30031 3.35967 3.38087 3.45433 3.47064 3.64300 3.84794 4.36396 4.47027 4.49784 4.51747 4.64702 4.66404 4.82178 5.16567 5.23215 5.30884 5.34404 5.38186 5.43511 5.48652 5.56165 5.72203 5.76760 5.83453 5.93615 5.97190 6.15237 6.21713 6.31723 6.37491 6.41467 6.50122 6.52345 6.62172 6.76971 6.84688 7.02164 7.10022 7.37112 7.52440 7.68043 7.72210 7.83467 8.18324 8.47226 9.22737 9.86590 10.43578 11.31948 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.002540 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.202862 B =11018.989105 C =11458.330437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.148 3.852 6 H 0.084 0.916 7 N -0.697 5.697 8 C 0.563 3.437 9 O -0.524 6.524 10 C 0.143 3.857 11 C -0.179 4.179 12 C 0.153 3.847 13 N -0.507 5.507 14 C 0.348 3.652 15 C -0.104 4.104 16 C -0.153 4.153 17 C -0.154 4.154 18 N -0.491 5.491 19 C -0.147 4.147 20 C 0.175 3.825 21 N -0.587 5.587 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.899 3.101 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.407 0.593 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.021 0.979 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -6.229 22.521 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.045 3.955 6 H 0.102 0.898 7 N -0.346 5.346 8 C 0.346 3.654 9 O -0.399 6.399 10 C -0.006 4.006 11 C -0.202 4.202 12 C -0.014 4.014 13 N -0.222 5.222 14 C 0.081 3.919 15 C -0.124 4.124 16 C -0.190 4.190 17 C -0.193 4.193 18 N -0.207 5.207 19 C -0.187 4.187 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.729 3.271 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.180 0.820 37 H 0.194 0.806 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.039 0.961 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.081 -6.239 22.302 23.943 hybrid contribution -0.014 -0.165 -1.001 1.015 sum 6.066 -6.404 21.301 23.055 Atomic orbital electron populations 1.21791 0.95693 1.01486 1.00317 1.20357 0.93131 0.93549 0.86547 0.95505 1.22394 0.93342 1.01875 0.99788 1.21189 0.94612 0.96790 0.82906 0.89770 1.46222 1.12600 1.47291 1.28476 1.17787 0.82980 0.81652 0.82991 1.90816 1.56398 1.36814 1.55862 1.21848 0.91349 0.92714 0.94647 1.23004 0.97201 1.01613 0.98408 1.23331 0.99211 0.88897 0.89977 1.68041 1.04082 1.17015 1.33024 1.22090 0.88933 0.92449 0.88432 1.20655 0.97788 0.94206 0.99731 1.23034 1.03875 1.01946 0.90188 1.22998 1.03360 0.90898 1.02008 1.68063 1.37796 1.07727 1.07109 1.22582 0.99763 0.99696 0.96640 1.20741 0.83287 0.97325 0.93760 1.44172 1.02973 1.64899 1.19032 1.19163 0.94892 1.37798 0.86202 0.91216 1.25092 0.97915 0.99666 0.96962 1.70030 1.24115 1.43740 1.16748 0.86332 0.79367 0.80024 0.81347 1.21503 1.21645 1.20456 0.94281 0.91850 0.92710 0.91608 0.92569 0.75807 0.82049 0.80551 0.85029 0.87210 0.88057 0.87725 0.88547 0.92871 0.92481 0.89261 0.96061 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.47 3.50 -67.60 -0.24 3.24 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.26 4.84 -26.61 -0.13 -2.39 16 5 C 0.15 2.60 2.42 -67.89 -0.16 2.44 16 6 H 0.08 1.63 7.57 -51.93 -0.39 1.23 16 7 N -0.70 -10.55 5.07 -54.51 -0.28 -10.82 16 8 C 0.56 8.82 7.80 -12.05 -0.09 8.73 16 9 O -0.52 -9.67 16.09 5.38 0.09 -9.58 16 10 C 0.14 1.88 6.79 -82.64 -0.56 1.32 16 11 C -0.18 -1.91 9.72 -38.90 -0.38 -2.29 16 12 C 0.15 1.34 11.31 -17.19 -0.19 1.15 16 13 N -0.51 -5.24 9.32 -10.74 -0.10 -5.34 16 14 C 0.35 3.88 7.31 -157.30 -1.15 2.73 16 15 C -0.10 -0.90 6.23 -91.77 -0.57 -1.47 16 16 C -0.15 -1.03 10.01 -26.74 -0.27 -1.30 16 17 C -0.15 -1.10 10.23 -26.74 -0.27 -1.37 16 18 N -0.49 -6.16 9.60 -7.32 -0.07 -6.23 16 19 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 20 C 0.18 4.21 5.29 -3.71 -0.02 4.19 16 21 N -0.59 -14.30 2.99 -164.77 -0.49 -14.80 16 22 C -0.25 -6.65 8.60 -15.06 -0.13 -6.78 16 23 H 0.07 1.80 6.21 -52.49 -0.33 1.47 16 24 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 25 N -0.90 -26.11 11.22 55.49 0.62 -25.48 16 26 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 32 H 0.05 1.01 7.40 -51.93 -0.38 0.62 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.41 5.47 7.99 -40.82 -0.33 5.15 16 36 H 0.16 1.54 7.74 -52.49 -0.41 1.14 16 37 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 0.81 7.54 -51.93 -0.39 0.42 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 2.40 6.11 -51.93 -0.32 2.08 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -31.34 381.90 -10.76 -42.11 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.15 Total: 4.99 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -4.11 Total: 2.92 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.32 Total: -62.67 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.34 -10.76 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.231 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds