Wall clock time and date at job start Tue Mar 31 2020 17:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.69792 * 2 1 4 4 C 1.53192 * 109.58470 * 120.34997 * 2 1 3 5 5 C 1.53048 * 109.31025 * 174.42753 * 4 2 1 6 6 H 1.08995 * 109.46295 * 58.64156 * 5 4 2 7 7 N 1.46493 * 109.45802 * 178.61696 * 5 4 2 8 8 C 1.34784 * 119.99873 * 205.30062 * 7 5 4 9 9 O 1.21480 * 119.99738 * 359.71922 * 8 7 5 10 10 C 1.48449 * 119.99961 * 179.72304 * 8 7 5 11 11 C 1.39536 * 120.54879 * 179.72041 * 10 8 7 12 12 C 1.38770 * 118.26310 * 179.73747 * 11 10 8 13 13 N 1.32204 * 119.14720 * 0.53952 * 12 11 10 14 14 C 1.31885 * 121.03324 * 359.71888 * 13 12 11 15 15 C 1.50701 * 119.03865 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49693 * 8.65117 * 15 14 13 17 17 C 1.52992 * 59.99900 * 252.50584 * 16 15 14 18 18 N 1.31576 * 121.92067 * 0.02562 * 14 13 12 19 19 C 1.53047 * 109.52208 * 298.62371 * 5 4 2 20 20 C 1.53193 * 109.30953 * 61.39151 * 19 5 4 21 21 N 1.46922 * 109.58730 * 239.64101 * 2 1 3 22 22 C 1.36935 * 120.62977 * 6.62402 * 21 2 1 23 23 H 1.07995 * 120.00234 * 330.85222 * 22 21 2 24 24 C 1.38817 * 119.99809 * 150.84612 * 22 21 2 25 25 N 1.31622 * 120.00128 * 343.82094 * 24 22 21 26 26 Si 1.86801 * 119.99924 * 163.81072 * 24 22 21 27 27 H 1.48501 * 109.46823 * 94.31440 * 26 24 22 28 28 H 1.48495 * 109.47324 * 214.31339 * 26 24 22 29 29 H 1.48504 * 109.47033 * 334.31465 * 26 24 22 30 30 H 1.08997 * 109.46908 * 299.64987 * 1 2 3 31 31 H 1.08999 * 109.46988 * 59.64611 * 1 2 3 32 32 H 1.09000 * 109.46837 * 179.64812 * 1 2 3 33 33 H 1.08991 * 109.49811 * 54.47109 * 4 2 1 34 34 H 1.08997 * 109.49818 * 294.37159 * 4 2 1 35 35 H 0.96999 * 120.00425 * 25.01845 * 7 5 4 36 36 H 1.08002 * 120.86997 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.42058 * 180.26112 * 12 11 10 38 38 H 1.08995 * 115.54835 * 154.35302 * 15 14 13 39 39 H 1.09007 * 117.50138 * 359.97438 * 16 15 14 40 40 H 1.09005 * 117.50266 * 145.01478 * 16 15 14 41 41 H 1.09001 * 117.50219 * 252.50748 * 17 16 15 42 42 H 1.09004 * 117.49724 * 107.49075 * 17 16 15 43 43 H 1.08995 * 109.49258 * 181.32427 * 19 5 4 44 44 H 1.08993 * 109.50135 * 301.42594 * 19 5 4 45 45 H 1.08997 * 109.58394 * 185.56095 * 20 19 5 46 46 H 1.09004 * 109.71952 * 65.19575 * 20 19 5 47 47 H 0.96994 * 119.99600 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5676 -0.8478 1.1703 6 1 4.0062 0.1475 1.0992 7 7 4.0652 -1.5154 2.3755 8 6 5.3276 -1.2970 2.7944 9 8 6.0542 -0.5505 2.1696 10 6 5.8299 -1.9688 4.0192 11 6 7.1365 -1.7555 4.4599 12 6 7.5548 -2.4033 5.6136 13 7 6.7120 -3.2024 6.2450 14 6 5.4848 -3.3861 5.7980 15 6 4.5616 -4.3076 6.5528 16 6 5.0358 -4.8239 7.9128 17 6 4.9928 -5.7672 6.7090 18 7 5.0435 -2.7891 4.7117 19 6 3.9567 -1.6658 -0.0633 20 6 3.4652 -0.9470 -1.3236 21 7 2.0226 -0.6996 -1.1944 22 6 1.1538 -1.1128 -2.1688 23 1 0.1366 -1.3691 -1.9121 24 6 1.5805 -1.2022 -3.4867 25 7 2.6909 -0.6027 -3.8611 26 14 0.5791 -2.1737 -4.7289 27 1 -0.3431 -1.2572 -5.4464 28 1 1.4930 -2.8200 -5.7046 29 1 -0.2088 -3.2159 -4.0230 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.6030 -1.7251 1.2915 34 1 1.7660 -0.1666 2.1368 35 1 3.4850 -2.1115 2.8744 36 1 7.8036 -1.1003 3.9194 37 1 8.5576 -2.2598 5.9883 38 1 3.4969 -4.1073 6.4335 39 1 6.0156 -4.4975 8.2614 40 1 4.2829 -4.9634 8.6886 41 1 4.2118 -6.5273 6.6927 42 1 5.9443 -6.0610 6.2657 43 1 5.0409 -1.7699 -0.1035 44 1 3.4979 -2.6528 -0.0049 45 1 3.6519 -1.5718 -2.1969 46 1 3.9901 0.0019 -1.4341 47 1 2.9892 -0.6656 -4.7819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947766441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:21 Heat of formation + Delta-G solvation = 41.067035 kcal Electronic energy + Delta-G solvation = -27965.176857 eV Core-core repulsion = 24148.678637 eV Total energy + Delta-G solvation = -3816.498220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.44406 -40.91703 -39.30562 -37.93077 -36.25896 -35.07289 -34.19000 -33.04203 -32.79926 -31.28245 -28.11523 -27.18791 -26.30254 -26.08277 -23.97057 -23.26531 -23.17259 -22.08579 -21.50059 -20.92152 -19.27937 -18.81717 -18.23253 -17.28159 -16.86156 -16.85324 -16.59382 -16.54457 -15.80264 -15.78424 -15.59972 -15.30258 -15.13727 -14.93254 -14.79733 -14.54939 -14.34084 -13.35140 -13.24300 -12.98025 -12.73529 -12.72541 -12.62841 -12.39677 -12.37520 -12.12038 -12.07891 -11.98389 -11.92214 -11.89508 -11.75338 -11.63853 -11.54033 -11.37219 -11.18090 -10.55897 -10.46651 -10.38717 -10.12694 -8.65431 -7.84132 -5.29648 -0.68030 -0.19110 1.46957 1.49025 1.55366 1.58265 1.80763 2.50252 2.52924 2.54780 2.88250 3.15385 3.32024 3.44553 3.59579 3.63954 3.81704 3.90623 3.93459 4.01106 4.12088 4.15590 4.23375 4.35677 4.48567 4.56666 4.58687 4.69438 4.73084 4.78146 4.81936 4.93089 4.97949 5.02809 5.05047 5.12209 5.13367 5.22169 5.34097 5.35829 5.38633 5.50490 5.54891 5.69153 5.71018 5.73630 6.34677 6.43082 6.84386 6.98126 7.17046 7.88727 8.41640 9.23637 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.002540 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.202862 B =11018.989105 C =11458.330437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.161 3.839 3 H 0.014 0.986 4 C -0.119 4.119 5 C 0.159 3.841 6 H 0.065 0.935 7 N -0.687 5.687 8 C 0.564 3.436 9 O -0.558 6.558 10 C 0.121 3.879 11 C -0.180 4.180 12 C 0.166 3.834 13 N -0.510 5.510 14 C 0.338 3.662 15 C -0.123 4.123 16 C -0.139 4.139 17 C -0.149 4.149 18 N -0.504 5.504 19 C -0.130 4.130 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.249 4.249 23 H 0.080 0.920 24 C -0.057 4.057 25 N -0.940 5.940 26 Si 0.963 3.037 27 H -0.287 1.287 28 H -0.298 1.298 29 H -0.266 1.266 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.418 0.582 36 H 0.169 0.831 37 H 0.220 0.780 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.055 0.945 46 H -0.009 1.009 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -7.605 25.677 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.032 0.968 4 C -0.158 4.158 5 C 0.055 3.945 6 H 0.083 0.917 7 N -0.337 5.337 8 C 0.348 3.652 9 O -0.436 6.436 10 C -0.026 4.026 11 C -0.203 4.203 12 C -0.002 4.002 13 N -0.224 5.224 14 C 0.071 3.929 15 C -0.143 4.143 16 C -0.177 4.177 17 C -0.188 4.188 18 N -0.220 5.220 19 C -0.170 4.170 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.098 0.902 24 C -0.251 4.251 25 N -0.587 5.587 26 Si 0.791 3.209 27 H -0.214 1.214 28 H -0.225 1.225 29 H -0.191 1.191 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.255 0.745 36 H 0.187 0.813 37 H 0.237 0.763 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.010 0.990 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.288 -7.635 25.511 27.149 hybrid contribution 0.286 0.292 -1.878 1.922 sum 5.574 -7.343 23.633 25.367 Atomic orbital electron populations 1.21710 0.93797 1.01718 1.01201 1.20629 0.94776 0.92931 0.86236 0.96790 1.22203 0.92163 1.02339 0.99096 1.20839 0.95346 0.95457 0.82867 0.91665 1.45967 1.12888 1.47282 1.27586 1.18169 0.82519 0.81023 0.83480 1.90795 1.57195 1.38367 1.57226 1.21517 0.92629 0.94118 0.94363 1.23200 0.96271 1.01739 0.99052 1.24027 1.00464 0.87033 0.88629 1.68162 1.04013 1.17221 1.33050 1.22599 0.89684 0.92453 0.88120 1.20814 0.97726 0.94745 1.01029 1.23098 1.04005 1.00639 0.89909 1.23060 1.03355 0.90451 1.01894 1.68010 1.38085 1.08158 1.07790 1.22317 0.99171 0.99545 0.96010 1.20440 0.83697 0.95584 0.94533 1.44430 1.02646 1.65608 1.19990 1.19546 0.95395 1.36315 0.86619 0.90233 1.25859 0.99172 1.01153 0.98950 1.70200 1.26094 1.45785 1.16620 0.85326 0.77801 0.78785 0.78945 1.21416 1.22490 1.19070 0.90443 0.94002 0.92653 0.90730 0.89307 0.74483 0.81321 0.76312 0.84504 0.87826 0.86043 0.86057 0.89495 0.93466 0.92162 0.92616 0.99047 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 7.95 71.98 0.57 -3.82 16 2 C 0.16 6.39 3.50 44.98 0.16 6.55 16 3 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 4 C -0.12 -3.77 4.84 30.67 0.15 -3.62 16 5 C 0.16 5.55 2.42 45.02 0.11 5.66 16 6 H 0.07 2.56 7.57 -2.39 -0.02 2.55 16 7 N -0.69 -20.24 5.07 -444.69 -2.25 -22.50 16 8 C 0.56 17.54 7.80 86.96 0.68 18.21 16 9 O -0.56 -20.95 16.09 -3.65 -0.06 -21.01 16 10 C 0.12 3.07 6.79 41.99 0.29 3.36 16 11 C -0.18 -3.56 9.72 22.71 0.22 -3.34 16 12 C 0.17 2.47 11.31 84.76 0.96 3.43 16 13 N -0.51 -9.38 9.32 -187.88 -1.75 -11.13 16 14 C 0.34 6.97 7.31 138.79 1.01 7.98 16 15 C -0.12 -1.88 6.23 -11.54 -0.07 -1.95 16 16 C -0.14 -1.52 10.01 30.59 0.31 -1.21 16 17 C -0.15 -1.79 10.23 30.59 0.31 -1.47 16 18 N -0.50 -12.01 9.60 -177.08 -1.70 -13.71 16 19 C -0.13 -5.31 5.65 30.67 0.17 -5.14 16 20 C 0.18 9.27 5.29 86.36 0.46 9.73 16 21 N -0.60 -29.86 2.99 -675.21 -2.02 -31.88 16 22 C -0.25 -13.29 8.60 84.03 0.72 -12.57 16 23 H 0.08 4.04 6.21 -2.91 -0.02 4.02 16 24 C -0.06 -3.17 4.93 84.86 0.42 -2.76 16 25 N -0.94 -56.74 11.22 21.65 0.24 -56.50 16 26 Si 0.96 45.00 29.58 68.60 2.03 47.03 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.61 7.66 -2.39 -0.02 1.59 16 32 H 0.05 1.90 7.40 -2.39 -0.02 1.88 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.42 10.57 7.99 -92.71 -0.74 9.83 16 36 H 0.17 3.03 7.74 -2.91 -0.02 3.01 16 37 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.10 1.29 7.54 -2.38 -0.02 1.27 16 40 H 0.12 0.83 8.14 -2.38 -0.02 0.82 16 41 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 3.16 6.11 -2.39 -0.01 3.15 16 46 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 47 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -70.75 381.90 1.20 -69.56 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.24 Total: 21.09 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.46 Total: 19.05 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -7.48 Total: -135.72 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.06 Total: -21.01 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.75 1.20 -69.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.623 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds