Wall clock time and date at job start Tue Mar 31 2020 17:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.70199 * 2 1 4 4 C 1.53190 * 109.59072 * 239.63806 * 2 1 3 5 5 C 1.53036 * 109.31632 * 185.57547 * 4 2 1 6 6 H 1.09002 * 109.45511 * 301.36114 * 5 4 2 7 7 N 1.46498 * 109.46103 * 181.38672 * 5 4 2 8 8 C 1.34784 * 119.99536 * 155.21348 * 7 5 4 9 9 O 1.21474 * 120.00351 * 359.72204 * 8 7 5 10 10 C 1.48457 * 119.99575 * 179.72837 * 8 7 5 11 11 C 1.39534 * 120.55001 * 179.97438 * 10 8 7 12 12 C 1.38759 * 118.26436 * 179.97438 * 11 10 8 13 13 N 1.32200 * 119.14928 * 359.97438 * 12 11 10 14 14 C 1.31884 * 121.03722 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.04490 * 179.97438 * 14 13 12 16 16 C 1.53003 * 117.49632 * 8.74193 * 15 14 13 17 17 C 1.53000 * 117.49841 * 300.08717 * 15 14 13 18 18 N 1.31584 * 121.91412 * 359.71385 * 14 13 12 19 19 C 1.53046 * 109.53605 * 61.36709 * 5 4 2 20 20 C 1.53192 * 109.31312 * 298.63785 * 19 5 4 21 21 N 1.46922 * 108.77795 * 54.63165 * 20 19 5 22 22 C 1.36933 * 120.63113 * 126.41267 * 21 20 19 23 23 H 1.08009 * 120.00280 * 221.22174 * 22 21 20 24 24 C 1.38808 * 120.00194 * 41.22200 * 22 21 20 25 25 N 1.31621 * 120.00356 * 214.83412 * 24 22 21 26 26 Si 1.86803 * 119.99986 * 34.82867 * 24 22 21 27 27 H 1.48495 * 109.46921 * 84.62917 * 26 24 22 28 28 H 1.48494 * 109.47111 * 204.62931 * 26 24 22 29 29 H 1.48503 * 109.46833 * 324.62991 * 26 24 22 30 30 H 1.08993 * 109.47157 * 299.64881 * 1 2 3 31 31 H 1.09003 * 109.46691 * 59.65096 * 1 2 3 32 32 H 1.08998 * 109.47024 * 179.64614 * 1 2 3 33 33 H 1.09002 * 109.49402 * 65.62839 * 4 2 1 34 34 H 1.08994 * 109.49838 * 305.53186 * 4 2 1 35 35 H 0.96991 * 120.00183 * 334.93587 * 7 5 4 36 36 H 1.08001 * 120.86653 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.42268 * 180.02562 * 12 11 10 38 38 H 1.09004 * 115.55471 * 154.41681 * 15 14 13 39 39 H 1.08993 * 117.50044 * 0.02562 * 16 15 14 40 40 H 1.09004 * 117.49533 * 145.02135 * 16 15 14 41 41 H 1.09001 * 117.50162 * 214.97750 * 17 15 14 42 42 H 1.09003 * 117.49966 * 359.97438 * 17 15 14 43 43 H 1.09010 * 109.49627 * 58.58541 * 19 5 4 44 44 H 1.08999 * 109.50078 * 178.68140 * 19 5 4 45 45 H 1.09000 * 109.58561 * 174.42040 * 20 19 5 46 46 H 1.09001 * 109.58341 * 294.69871 * 20 19 5 47 47 H 0.96997 * 120.00062 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8480 -1.1700 6 1 4.0061 0.1474 -1.0990 7 7 4.0653 -1.5159 -2.3752 8 6 5.3310 -1.3055 -2.7881 9 8 6.0573 -0.5583 -2.1639 10 6 5.8372 -1.9870 -4.0060 11 6 7.1453 -1.7772 -4.4441 12 6 7.5692 -2.4388 -5.5879 13 7 6.7269 -3.2392 -6.2183 14 6 5.4966 -3.4152 -5.7770 15 6 4.5738 -4.3375 -6.5311 16 6 5.1804 -5.1795 -7.6554 17 6 4.2709 -3.9950 -7.9912 18 7 5.0530 -2.8128 -4.6945 19 6 3.9570 -1.6657 0.0637 20 6 3.4650 -0.9468 1.3239 21 7 2.0226 -0.6994 1.1946 22 6 1.1537 -1.1125 2.1690 23 1 0.2058 -1.5526 1.8963 24 6 1.4911 -0.9658 3.5075 25 7 1.1096 -1.8692 4.3853 26 14 2.4869 0.5139 4.0628 27 1 1.5756 1.6609 4.3058 28 1 3.2097 0.1818 5.3168 29 1 3.4670 0.8753 3.0073 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8869 32 1 -0.3633 -1.0276 -0.0063 33 1 1.7661 -0.1670 -2.1367 34 1 1.6031 -1.7254 -1.2911 35 1 3.4853 -2.1125 -2.8736 36 1 7.8104 -1.1172 -3.9071 37 1 8.5746 -2.3021 -5.9577 38 1 3.7729 -4.7855 -5.9427 39 1 6.2470 -5.0666 -7.8493 40 1 4.7785 -6.1813 -7.8068 41 1 3.2710 -4.2180 -8.3635 42 1 4.7388 -3.1023 -8.4062 43 1 3.4983 -2.6529 0.0056 44 1 5.0413 -1.7696 0.1040 45 1 3.6518 -1.5716 2.1974 46 1 3.9921 0.0009 1.4332 47 1 1.3451 -1.7665 5.3206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947766444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:26 Heat of formation + Delta-G solvation = 62.482990 kcal Electronic energy + Delta-G solvation = -27997.257973 eV Core-core repulsion = 24181.688418 eV Total energy + Delta-G solvation = -3815.569555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63183 -39.74255 -37.92212 -37.30178 -34.84875 -34.16830 -32.36944 -32.14805 -31.57624 -30.13170 -26.71017 -26.01729 -25.37990 -24.49768 -22.74875 -22.62359 -22.16090 -20.88403 -20.28422 -19.48268 -18.26560 -18.01419 -16.48243 -16.17656 -15.87986 -15.79738 -15.64124 -15.11598 -14.88700 -14.53783 -14.47801 -14.37605 -13.85179 -13.59002 -13.32753 -13.12364 -12.62551 -12.60074 -12.06316 -11.90937 -11.72877 -11.38441 -11.30806 -11.29025 -11.16013 -11.03564 -10.96954 -10.86428 -10.59972 -10.58011 -10.31181 -10.28282 -10.01019 -9.92540 -9.69504 -9.60187 -9.44043 -8.87387 -8.35166 -6.71675 -6.07911 -3.38462 0.18879 0.53115 2.56208 2.87616 3.25938 3.31368 3.42589 3.52893 3.58855 3.59303 3.80909 4.30010 4.42734 4.48543 4.59032 4.61036 4.62725 4.78287 4.90959 5.12161 5.15512 5.25473 5.28175 5.31627 5.41553 5.46437 5.64040 5.69376 5.80158 5.81436 5.89940 6.03060 6.06094 6.17129 6.26037 6.30211 6.41791 6.44134 6.47946 6.55143 6.68056 6.85358 6.89686 7.02659 7.11626 7.44446 7.65902 8.03695 8.08779 8.42833 9.00563 9.72685 10.21546 11.07493 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.002614 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.806776 B =10710.489695 C =11353.167539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 H 0.029 0.971 4 C -0.134 4.134 5 C 0.148 3.852 6 H 0.084 0.916 7 N -0.696 5.696 8 C 0.565 3.435 9 O -0.525 6.525 10 C 0.142 3.858 11 C -0.180 4.180 12 C 0.153 3.847 13 N -0.506 5.506 14 C 0.349 3.651 15 C -0.104 4.104 16 C -0.152 4.152 17 C -0.154 4.154 18 N -0.490 5.490 19 C -0.143 4.143 20 C 0.147 3.853 21 N -0.595 5.595 22 C -0.276 4.276 23 H 0.077 0.923 24 C 0.051 3.949 25 N -0.880 5.880 26 Si 0.842 3.158 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.259 1.259 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -3.264 -24.271 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.062 3.938 3 H 0.046 0.954 4 C -0.174 4.174 5 C 0.045 3.955 6 H 0.103 0.897 7 N -0.346 5.346 8 C 0.348 3.652 9 O -0.400 6.400 10 C -0.006 4.006 11 C -0.202 4.202 12 C -0.014 4.014 13 N -0.221 5.221 14 C 0.082 3.918 15 C -0.124 4.124 16 C -0.190 4.190 17 C -0.193 4.193 18 N -0.207 5.207 19 C -0.183 4.183 20 C 0.021 3.979 21 N -0.319 5.319 22 C -0.403 4.403 23 H 0.094 0.906 24 C -0.152 4.152 25 N -0.519 5.519 26 Si 0.668 3.332 27 H -0.215 1.215 28 H -0.224 1.224 29 H -0.184 1.184 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.179 0.821 37 H 0.195 0.805 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.043 -3.372 -24.037 25.902 hybrid contribution 0.957 1.152 0.814 1.704 sum 10.000 -2.221 -23.223 25.382 Atomic orbital electron populations 1.21749 0.95011 1.01879 1.00389 1.20485 0.93775 0.93267 0.86305 0.95363 1.22364 0.93083 1.02196 0.99728 1.21148 0.94822 0.96653 0.82899 0.89749 1.46175 1.12447 1.47442 1.28524 1.17790 0.82888 0.81594 0.82964 1.90808 1.56599 1.36889 1.55723 1.21807 0.91379 0.92855 0.94604 1.22993 0.97172 1.01624 0.98444 1.23332 0.99319 0.88742 0.89984 1.68044 1.04018 1.17058 1.32965 1.22099 0.88867 0.92344 0.88498 1.20669 1.00304 1.00885 0.90567 1.23047 1.00697 0.95661 0.99613 1.23007 1.01460 1.00357 0.94432 1.68064 1.37643 1.07603 1.07349 1.22452 0.99935 1.00029 0.95863 1.21259 0.84780 0.96874 0.95003 1.44415 1.02288 1.65258 1.19983 1.18572 1.02320 1.35149 0.84292 0.90555 1.25591 0.96805 0.96897 0.95935 1.70081 1.47156 1.31351 1.03268 0.87388 0.80795 0.86854 0.78128 1.21503 1.22416 1.18406 0.91623 0.94277 0.92438 0.92279 0.91234 0.75608 0.82078 0.80534 0.84967 0.87208 0.88008 0.87718 0.88577 0.91652 0.92567 0.91178 0.95524 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.07 37.16 0.30 -2.09 16 2 C 0.17 3.22 3.50 -67.60 -0.24 2.99 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.13 4.84 -26.61 -0.13 -2.26 16 5 C 0.15 2.42 2.41 -67.89 -0.16 2.26 16 6 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 7 N -0.70 -9.92 5.07 -54.51 -0.28 -10.20 16 8 C 0.57 8.37 7.79 -12.05 -0.09 8.28 16 9 O -0.52 -9.17 16.09 5.39 0.09 -9.09 16 10 C 0.14 1.78 6.79 -82.63 -0.56 1.22 16 11 C -0.18 -1.82 9.72 -38.91 -0.38 -2.19 16 12 C 0.15 1.28 11.31 -17.20 -0.19 1.09 16 13 N -0.51 -5.05 9.33 -10.74 -0.10 -5.15 16 14 C 0.35 3.76 7.31 -157.30 -1.15 2.61 16 15 C -0.10 -0.87 6.23 -91.77 -0.57 -1.44 16 16 C -0.15 -1.00 10.01 -26.69 -0.27 -1.27 16 17 C -0.15 -1.02 10.24 -26.70 -0.27 -1.30 16 18 N -0.49 -5.92 9.60 -7.32 -0.07 -5.99 16 19 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 20 C 0.15 3.21 4.59 -3.71 -0.02 3.19 16 21 N -0.60 -13.67 2.47 -164.78 -0.41 -14.08 16 22 C -0.28 -7.35 8.42 -15.06 -0.13 -7.48 16 23 H 0.08 2.17 6.84 -52.48 -0.36 1.81 16 24 C 0.05 1.42 4.82 -17.43 -0.08 1.33 16 25 N -0.88 -26.13 13.97 55.49 0.78 -25.36 16 26 Si 0.84 21.34 27.40 -169.99 -4.66 16.68 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 29 H -0.26 -6.36 5.24 56.52 0.30 -6.07 16 30 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.07 7.42 -51.93 -0.39 0.69 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.41 5.19 7.99 -40.82 -0.33 4.86 16 36 H 0.16 1.45 7.74 -52.49 -0.41 1.04 16 37 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.11 0.79 7.54 -51.93 -0.39 0.40 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.66 7.02 -51.93 -0.36 1.29 16 46 H 0.03 0.60 6.70 -51.93 -0.35 0.25 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -31.66 379.35 -10.29 -41.95 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.26 Total: 3.34 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -4.10 Total: 2.16 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.08 Total: -60.77 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.66 Total: 16.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.66 -10.29 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.437 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds