Wall clock time and date at job start Tue Mar 31 2020 17:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.70199 * 2 1 4 4 C 1.53190 * 109.59072 * 239.63806 * 2 1 3 5 5 C 1.53036 * 109.31632 * 185.57547 * 4 2 1 6 6 H 1.09002 * 109.45511 * 301.36114 * 5 4 2 7 7 N 1.46498 * 109.46103 * 181.38672 * 5 4 2 8 8 C 1.34784 * 119.99536 * 155.21348 * 7 5 4 9 9 O 1.21474 * 120.00351 * 359.72204 * 8 7 5 10 10 C 1.48457 * 119.99575 * 179.72837 * 8 7 5 11 11 C 1.39534 * 120.55001 * 179.97438 * 10 8 7 12 12 C 1.38759 * 118.26436 * 179.97438 * 11 10 8 13 13 N 1.32200 * 119.14928 * 359.97438 * 12 11 10 14 14 C 1.31884 * 121.03722 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.04490 * 179.97438 * 14 13 12 16 16 C 1.53003 * 117.49632 * 8.74193 * 15 14 13 17 17 C 1.53000 * 117.49841 * 300.08717 * 15 14 13 18 18 N 1.31584 * 121.91412 * 359.71385 * 14 13 12 19 19 C 1.53046 * 109.53605 * 61.36709 * 5 4 2 20 20 C 1.53192 * 109.31312 * 298.63785 * 19 5 4 21 21 N 1.46922 * 108.77795 * 54.63165 * 20 19 5 22 22 C 1.36933 * 120.63113 * 126.41267 * 21 20 19 23 23 H 1.08009 * 120.00280 * 221.22174 * 22 21 20 24 24 C 1.38808 * 120.00194 * 41.22200 * 22 21 20 25 25 N 1.31621 * 120.00356 * 214.83412 * 24 22 21 26 26 Si 1.86803 * 119.99986 * 34.82867 * 24 22 21 27 27 H 1.48495 * 109.46921 * 84.62917 * 26 24 22 28 28 H 1.48494 * 109.47111 * 204.62931 * 26 24 22 29 29 H 1.48503 * 109.46833 * 324.62991 * 26 24 22 30 30 H 1.08993 * 109.47157 * 299.64881 * 1 2 3 31 31 H 1.09003 * 109.46691 * 59.65096 * 1 2 3 32 32 H 1.08998 * 109.47024 * 179.64614 * 1 2 3 33 33 H 1.09002 * 109.49402 * 65.62839 * 4 2 1 34 34 H 1.08994 * 109.49838 * 305.53186 * 4 2 1 35 35 H 0.96991 * 120.00183 * 334.93587 * 7 5 4 36 36 H 1.08001 * 120.86653 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.42268 * 180.02562 * 12 11 10 38 38 H 1.09004 * 115.55471 * 154.41681 * 15 14 13 39 39 H 1.08993 * 117.50044 * 0.02562 * 16 15 14 40 40 H 1.09004 * 117.49533 * 145.02135 * 16 15 14 41 41 H 1.09001 * 117.50162 * 214.97750 * 17 15 14 42 42 H 1.09003 * 117.49966 * 359.97438 * 17 15 14 43 43 H 1.09010 * 109.49627 * 58.58541 * 19 5 4 44 44 H 1.08999 * 109.50078 * 178.68140 * 19 5 4 45 45 H 1.09000 * 109.58561 * 174.42040 * 20 19 5 46 46 H 1.09001 * 109.58341 * 294.69871 * 20 19 5 47 47 H 0.96997 * 120.00062 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8480 -1.1700 6 1 4.0061 0.1474 -1.0990 7 7 4.0653 -1.5159 -2.3752 8 6 5.3310 -1.3055 -2.7881 9 8 6.0573 -0.5583 -2.1639 10 6 5.8372 -1.9870 -4.0060 11 6 7.1453 -1.7772 -4.4441 12 6 7.5692 -2.4388 -5.5879 13 7 6.7269 -3.2392 -6.2183 14 6 5.4966 -3.4152 -5.7770 15 6 4.5738 -4.3375 -6.5311 16 6 5.1804 -5.1795 -7.6554 17 6 4.2709 -3.9950 -7.9912 18 7 5.0530 -2.8128 -4.6945 19 6 3.9570 -1.6657 0.0637 20 6 3.4650 -0.9468 1.3239 21 7 2.0226 -0.6994 1.1946 22 6 1.1537 -1.1125 2.1690 23 1 0.2058 -1.5526 1.8963 24 6 1.4911 -0.9658 3.5075 25 7 1.1096 -1.8692 4.3853 26 14 2.4869 0.5139 4.0628 27 1 1.5756 1.6609 4.3058 28 1 3.2097 0.1818 5.3168 29 1 3.4670 0.8753 3.0073 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8869 32 1 -0.3633 -1.0276 -0.0063 33 1 1.7661 -0.1670 -2.1367 34 1 1.6031 -1.7254 -1.2911 35 1 3.4853 -2.1125 -2.8736 36 1 7.8104 -1.1172 -3.9071 37 1 8.5746 -2.3021 -5.9577 38 1 3.7729 -4.7855 -5.9427 39 1 6.2470 -5.0666 -7.8493 40 1 4.7785 -6.1813 -7.8068 41 1 3.2710 -4.2180 -8.3635 42 1 4.7388 -3.1023 -8.4062 43 1 3.4983 -2.6529 0.0056 44 1 5.0413 -1.7696 0.1040 45 1 3.6518 -1.5716 2.1974 46 1 3.9921 0.0009 1.4332 47 1 1.3451 -1.7665 5.3206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947766444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:25 Heat of formation + Delta-G solvation = 42.880158 kcal Electronic energy + Delta-G solvation = -27998.108015 eV Core-core repulsion = 24181.688418 eV Total energy + Delta-G solvation = -3816.419597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.44444 -40.94347 -39.39204 -37.92857 -36.26743 -35.07412 -34.21868 -33.21109 -32.89105 -31.75928 -28.20629 -27.13642 -26.17708 -26.05109 -24.12581 -23.35312 -23.19323 -22.04303 -21.55986 -20.99639 -19.29697 -18.82585 -18.33307 -17.31002 -16.87251 -16.81073 -16.63213 -16.52191 -16.30282 -15.77473 -15.51084 -15.26601 -15.14855 -14.91205 -14.80427 -14.69215 -14.42254 -13.96397 -13.36296 -13.24013 -12.80287 -12.71289 -12.58261 -12.48810 -12.39709 -12.15185 -12.07563 -11.98092 -11.94129 -11.89955 -11.68936 -11.65801 -11.59580 -11.37100 -11.24927 -10.50163 -10.44725 -10.39582 -10.16120 -8.64699 -8.24839 -5.50560 -0.67705 -0.19123 1.36789 1.44233 1.52460 1.55107 1.80198 2.47985 2.50230 2.55034 2.87831 2.94498 3.15266 3.38262 3.47078 3.64052 3.78080 3.90628 3.93268 3.94671 4.11863 4.15606 4.19892 4.27643 4.48129 4.51733 4.55372 4.60789 4.66268 4.73091 4.81770 4.89679 4.97796 4.98197 5.04326 5.07905 5.09462 5.12231 5.21950 5.23524 5.33669 5.36989 5.49565 5.60374 5.70643 5.95471 6.29262 6.33920 6.84108 6.96964 7.02509 7.67206 8.18219 8.94901 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.002614 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.806776 B =10710.489695 C =11353.167539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.034 0.966 4 C -0.121 4.121 5 C 0.157 3.843 6 H 0.075 0.925 7 N -0.689 5.689 8 C 0.566 3.434 9 O -0.556 6.556 10 C 0.120 3.880 11 C -0.179 4.179 12 C 0.165 3.835 13 N -0.511 5.511 14 C 0.338 3.662 15 C -0.124 4.124 16 C -0.142 4.142 17 C -0.145 4.145 18 N -0.504 5.504 19 C -0.130 4.130 20 C 0.146 3.854 21 N -0.607 5.607 22 C -0.254 4.254 23 H 0.052 0.948 24 C 0.000 4.000 25 N -0.926 5.926 26 Si 0.895 3.105 27 H -0.291 1.291 28 H -0.304 1.304 29 H -0.248 1.248 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.417 0.583 36 H 0.171 0.829 37 H 0.220 0.780 38 H 0.135 0.865 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.025 0.975 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.278 -2.949 -27.626 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.052 0.948 4 C -0.160 4.160 5 C 0.053 3.947 6 H 0.093 0.907 7 N -0.338 5.338 8 C 0.350 3.650 9 O -0.433 6.433 10 C -0.027 4.027 11 C -0.202 4.202 12 C -0.003 4.003 13 N -0.225 5.225 14 C 0.072 3.928 15 C -0.144 4.144 16 C -0.180 4.180 17 C -0.183 4.183 18 N -0.221 5.221 19 C -0.170 4.170 20 C 0.020 3.980 21 N -0.332 5.332 22 C -0.384 4.384 23 H 0.070 0.930 24 C -0.199 4.199 25 N -0.568 5.568 26 Si 0.723 3.277 27 H -0.218 1.218 28 H -0.231 1.231 29 H -0.172 1.172 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.255 0.745 36 H 0.188 0.812 37 H 0.236 0.764 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.119 -3.047 -27.444 29.408 hybrid contribution 0.650 1.008 1.719 2.096 sum 10.768 -2.039 -25.725 27.962 Atomic orbital electron populations 1.21683 0.94137 1.01372 1.01178 1.20750 0.94629 0.93506 0.85747 0.94815 1.22193 0.92345 1.02270 0.99173 1.20867 0.95182 0.95821 0.82809 0.90674 1.45965 1.12691 1.47416 1.27767 1.18114 0.82475 0.81025 0.83356 1.90785 1.57296 1.38292 1.56945 1.21550 0.92612 0.94122 0.94451 1.23196 0.96278 1.01725 0.98981 1.24025 1.00559 0.86947 0.88728 1.68156 1.03934 1.17347 1.33074 1.22571 0.89604 0.92397 0.88262 1.20808 1.00705 1.01661 0.91260 1.23105 1.00433 0.96463 0.97954 1.23071 1.02352 1.00135 0.92790 1.68017 1.37988 1.08066 1.08040 1.22254 0.99772 0.99591 0.95415 1.21178 0.84359 0.96619 0.95798 1.44556 1.02234 1.65993 1.20385 1.18501 1.01634 1.33239 0.85011 0.93010 1.26053 0.98792 0.98709 0.96322 1.70160 1.50167 1.33037 1.03483 0.86519 0.79686 0.83855 0.77664 1.21815 1.23086 1.17184 0.93980 0.90286 0.93626 0.89022 0.91215 0.74523 0.81186 0.76381 0.84746 0.87833 0.86256 0.86016 0.89241 0.92158 0.92440 0.93718 0.95716 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.07 71.98 0.58 -3.77 16 2 C 0.16 5.84 3.50 44.97 0.16 6.00 16 3 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.12 -3.54 4.84 30.67 0.15 -3.40 16 5 C 0.16 4.91 2.41 45.02 0.11 5.02 16 6 H 0.08 2.55 7.58 -2.39 -0.02 2.54 16 7 N -0.69 -18.58 5.07 -444.69 -2.26 -20.84 16 8 C 0.57 16.17 7.79 86.97 0.68 16.85 16 9 O -0.56 -18.99 16.09 -3.64 -0.06 -19.05 16 10 C 0.12 2.85 6.79 41.99 0.29 3.14 16 11 C -0.18 -3.27 9.72 22.71 0.22 -3.05 16 12 C 0.16 2.29 11.31 84.76 0.96 3.24 16 13 N -0.51 -9.02 9.33 -187.90 -1.75 -10.77 16 14 C 0.34 6.74 7.31 138.78 1.01 7.75 16 15 C -0.12 -1.86 6.23 -11.54 -0.07 -1.93 16 16 C -0.14 -1.54 10.01 30.62 0.31 -1.23 16 17 C -0.15 -1.60 10.24 30.62 0.31 -1.29 16 18 N -0.50 -11.50 9.60 -177.08 -1.70 -13.20 16 19 C -0.13 -4.73 5.65 30.67 0.17 -4.56 16 20 C 0.15 6.39 4.59 86.36 0.40 6.79 16 21 N -0.61 -27.77 2.47 -675.23 -1.67 -29.44 16 22 C -0.25 -13.84 8.42 84.03 0.71 -13.13 16 23 H 0.05 3.05 6.84 -2.91 -0.02 3.03 16 24 C 0.00 0.00 4.82 84.86 0.41 0.41 16 25 N -0.93 -56.81 13.97 21.65 0.30 -56.50 16 26 Si 0.90 45.05 27.40 68.60 1.88 46.93 16 27 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 29 H -0.25 -11.82 5.24 99.48 0.52 -11.30 16 30 H 0.04 1.63 7.68 -2.39 -0.02 1.61 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.66 7.42 -2.39 -0.02 1.64 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.42 9.88 7.99 -92.71 -0.74 9.14 16 36 H 0.17 2.74 7.74 -2.91 -0.02 2.72 16 37 H 0.22 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.10 1.27 7.54 -2.39 -0.02 1.26 16 40 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 2.24 8.14 -2.38 -0.02 2.23 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.04 2.15 7.02 -2.39 -0.02 2.13 16 46 H 0.02 1.10 6.70 -2.39 -0.02 1.08 16 47 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -70.07 379.35 1.19 -68.87 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.06 Total: 17.16 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.39 Total: 16.84 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -7.07 Total: -130.75 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.06 Total: -19.05 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -70.07 1.19 -68.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.753 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds