Wall clock time and date at job start Tue Mar 31 2020 17:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58932 * 2 1 4 4 C 1.53190 * 109.70167 * 239.64507 * 2 1 3 5 5 C 1.53036 * 109.31506 * 185.50702 * 4 2 1 6 6 H 1.08996 * 109.45370 * 181.37825 * 5 4 2 7 7 N 1.46502 * 109.46114 * 301.34376 * 5 4 2 8 8 C 1.34773 * 120.00265 * 205.06229 * 7 5 4 9 9 O 1.21477 * 120.00144 * 0.02562 * 8 7 5 10 10 C 1.48450 * 120.00113 * 180.02562 * 8 7 5 11 11 C 1.39542 * 120.55143 * 180.02562 * 10 8 7 12 12 C 1.38761 * 118.26155 * 180.02562 * 11 10 8 13 13 N 1.32207 * 119.15014 * 359.97438 * 12 11 10 14 14 C 1.31877 * 121.03558 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.04043 * 179.97438 * 14 13 12 16 16 C 1.53005 * 117.49901 * 351.25508 * 15 14 13 17 17 C 1.52999 * 117.49758 * 59.91315 * 15 14 13 18 18 N 1.31574 * 121.91813 * 0.27358 * 14 13 12 19 19 C 1.53046 * 109.53781 * 61.36439 * 5 4 2 20 20 C 1.53189 * 109.31155 * 298.63828 * 19 5 4 21 21 N 1.46920 * 109.58611 * 120.28611 * 2 1 3 22 22 C 1.36939 * 120.63517 * 353.55678 * 21 2 1 23 23 H 1.07997 * 119.99283 * 28.99989 * 22 21 2 24 24 C 1.38811 * 119.99908 * 209.00465 * 22 21 2 25 25 N 1.31613 * 120.00705 * 15.02555 * 24 22 21 26 26 Si 1.86807 * 119.99397 * 195.02700 * 24 22 21 27 27 H 1.48500 * 109.47167 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47017 * 120.00247 * 26 24 22 29 29 H 1.48501 * 109.46752 * 240.00077 * 26 24 22 30 30 H 1.09005 * 109.46541 * 299.71808 * 1 2 3 31 31 H 1.09001 * 109.47347 * 59.71170 * 1 2 3 32 32 H 1.08997 * 109.47049 * 179.71920 * 1 2 3 33 33 H 1.08998 * 109.49906 * 65.55564 * 4 2 1 34 34 H 1.09000 * 109.49987 * 305.46194 * 4 2 1 35 35 H 0.96996 * 119.99635 * 25.07138 * 7 5 4 36 36 H 1.07992 * 120.86547 * 359.97385 * 11 10 8 37 37 H 1.08002 * 120.42168 * 179.97438 * 12 11 10 38 38 H 1.09003 * 115.55344 * 205.57984 * 15 14 13 39 39 H 1.09002 * 117.49945 * 215.00335 * 16 15 14 40 40 H 1.09003 * 117.49828 * 0.02562 * 16 15 14 41 41 H 1.08994 * 117.50066 * 359.97438 * 17 15 14 42 42 H 1.09004 * 117.50333 * 144.99866 * 17 15 14 43 43 H 1.08998 * 109.49376 * 58.58775 * 19 5 4 44 44 H 1.08998 * 109.49727 * 178.68085 * 19 5 4 45 45 H 1.08997 * 109.58704 * 174.42207 * 20 19 5 46 46 H 1.09002 * 109.58831 * 294.69983 * 20 19 5 47 47 H 0.96998 * 120.00716 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2445 5 6 3.5705 -0.8444 -1.1675 6 1 3.9426 -1.3409 -2.0636 7 7 4.1573 0.4946 -1.0722 8 6 5.4209 0.7079 -1.4894 9 8 6.0733 -0.2101 -1.9449 10 6 6.0157 2.0646 -1.3923 11 6 7.3228 2.2984 -1.8213 12 6 7.8313 3.5845 -1.7082 13 7 7.0666 4.5371 -1.2025 14 6 5.8349 4.2819 -0.8065 15 6 5.0030 5.4016 -0.2363 16 6 5.7048 6.7326 0.0411 17 6 4.7332 6.6097 -1.1354 18 7 5.3132 3.0768 -0.8893 19 6 3.9602 -1.6608 0.0669 20 6 3.4654 -0.9426 1.3263 21 7 2.0225 -0.6981 1.1953 22 6 1.1533 -1.1134 2.1686 23 1 0.1365 -1.3700 1.9106 24 6 1.5793 -1.2044 3.4866 25 7 2.7006 -0.6237 3.8575 26 14 0.5607 -2.1512 4.7339 27 1 -0.6461 -2.7052 4.0692 28 1 1.3717 -3.2619 5.2943 29 1 0.1467 -1.2386 5.8298 30 1 -0.3632 0.5095 0.8926 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.7688 -0.1672 -2.1365 34 1 1.6079 -1.7257 -1.2906 35 1 3.6363 1.2277 -0.7088 36 1 7.9232 1.4991 -2.2298 37 1 8.8388 3.8044 -2.0291 38 1 4.2116 5.0975 0.4489 39 1 5.3752 7.3041 0.9088 40 1 6.7681 6.7985 -0.1893 41 1 5.1577 6.5949 -2.1391 42 1 3.7644 7.1005 -1.0417 43 1 3.5036 -2.6488 0.0085 44 1 5.0446 -1.7626 0.1083 45 1 3.6524 -1.5666 2.2002 46 1 3.9905 0.0064 1.4359 47 1 2.9981 -0.6870 4.7786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947766447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:32 Heat of formation + Delta-G solvation = 62.985211 kcal Electronic energy + Delta-G solvation = -28796.956896 eV Core-core repulsion = 24981.409120 eV Total energy + Delta-G solvation = -3815.547777 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.42288 -39.65840 -37.75758 -37.08281 -34.45854 -33.95081 -32.32964 -31.94810 -31.15145 -29.63493 -26.49132 -25.82309 -25.17467 -24.86634 -22.58617 -22.47301 -21.86640 -20.69061 -20.45021 -18.72622 -18.13068 -17.80649 -16.40061 -15.95569 -15.64621 -15.54821 -15.33163 -15.09881 -14.72194 -14.43226 -14.23313 -13.94139 -13.77845 -13.68589 -13.13146 -12.84061 -12.47127 -12.39959 -11.85948 -11.71535 -11.44132 -11.21564 -11.16940 -11.08988 -11.02643 -10.89845 -10.68637 -10.66822 -10.64069 -10.39895 -10.24872 -10.12204 -10.06727 -9.69319 -9.48904 -9.38465 -9.29673 -8.67892 -8.45969 -6.63237 -5.76893 -3.21115 0.40011 0.74674 2.77341 3.11891 3.36877 3.45082 3.46427 3.48101 3.53834 3.80488 4.01783 4.48370 4.51886 4.64362 4.70146 4.81108 4.83737 4.98088 5.28483 5.34006 5.35497 5.36547 5.46510 5.51774 5.59621 5.65923 5.66566 5.91060 5.96568 6.01259 6.10472 6.11615 6.21674 6.30488 6.35429 6.44374 6.54552 6.59279 6.66407 6.75399 6.91836 7.01050 7.05962 7.38287 7.67854 7.70162 7.82736 7.89151 8.31312 8.46560 9.22444 9.86151 10.42643 11.31210 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003523 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.921616 B = 7945.370958 C = 8793.736985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.138 4.138 5 C 0.151 3.849 6 H 0.075 0.925 7 N -0.684 5.684 8 C 0.566 3.434 9 O -0.535 6.535 10 C 0.144 3.856 11 C -0.181 4.181 12 C 0.151 3.849 13 N -0.507 5.507 14 C 0.351 3.649 15 C -0.103 4.103 16 C -0.152 4.152 17 C -0.155 4.155 18 N -0.486 5.486 19 C -0.154 4.154 20 C 0.174 3.826 21 N -0.586 5.586 22 C -0.249 4.249 23 H 0.071 0.929 24 C 0.003 3.997 25 N -0.903 5.903 26 Si 0.899 3.101 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.413 0.587 36 H 0.160 0.840 37 H 0.176 0.824 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.017 0.983 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.493 10.801 -12.191 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.040 0.960 4 C -0.178 4.178 5 C 0.047 3.953 6 H 0.093 0.907 7 N -0.335 5.335 8 C 0.349 3.651 9 O -0.411 6.411 10 C -0.005 4.005 11 C -0.204 4.204 12 C -0.016 4.016 13 N -0.222 5.222 14 C 0.084 3.916 15 C -0.123 4.123 16 C -0.190 4.190 17 C -0.193 4.193 18 N -0.202 5.202 19 C -0.194 4.194 20 C 0.049 3.951 21 N -0.310 5.310 22 C -0.379 4.379 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.547 5.547 26 Si 0.730 3.270 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.251 0.749 36 H 0.178 0.822 37 H 0.193 0.807 38 H 0.152 0.848 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.036 0.964 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.404 10.793 -11.954 17.332 hybrid contribution -0.039 -0.932 0.631 1.126 sum 6.365 9.861 -11.323 16.308 Atomic orbital electron populations 1.21795 0.95776 1.01472 1.00328 1.20396 0.93226 0.93254 0.87163 0.96048 1.22366 0.93587 1.02472 0.99394 1.21029 0.93380 0.81810 0.99067 0.90667 1.46058 1.13245 1.13295 1.60915 1.17749 0.82580 0.85817 0.78987 1.90761 1.61151 1.42706 1.46523 1.21795 0.91837 0.93794 0.93041 1.22952 0.96568 0.99973 1.00919 1.23294 0.99475 0.87912 0.90941 1.68035 1.06029 1.36814 1.11311 1.22088 0.88015 0.90320 0.91201 1.20691 1.01547 0.85844 1.04257 1.23037 0.99618 0.96660 0.99698 1.22992 1.01343 0.98875 0.96086 1.68100 1.38087 1.00078 1.13893 1.22574 0.99930 0.99503 0.97384 1.20721 0.83184 0.97165 0.94057 1.44130 1.02893 1.65018 1.18916 1.19219 0.94885 1.37549 0.86235 0.91165 1.25076 0.97789 0.99756 0.96958 1.70023 1.23453 1.44590 1.16656 0.86270 0.79669 0.79558 0.81549 1.20276 1.21678 1.21821 0.91898 0.94302 0.92696 0.92513 0.90440 0.74885 0.82218 0.80682 0.84796 0.88036 0.87279 0.88676 0.87783 0.91525 0.92789 0.89462 0.96440 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.95 37.16 0.30 -2.16 16 2 C 0.17 3.27 3.19 -67.60 -0.22 3.05 16 3 H 0.02 0.44 6.64 -51.93 -0.34 0.10 16 4 C -0.14 -2.31 5.08 -26.61 -0.14 -2.45 16 5 C 0.15 2.63 2.78 -67.89 -0.19 2.44 16 6 H 0.08 1.28 7.57 -51.93 -0.39 0.89 16 7 N -0.68 -11.73 4.26 -54.52 -0.23 -11.97 16 8 C 0.57 9.66 7.79 -12.05 -0.09 9.57 16 9 O -0.53 -10.03 16.09 5.39 0.09 -9.94 16 10 C 0.14 2.17 6.79 -82.63 -0.56 1.61 16 11 C -0.18 -2.19 9.72 -38.90 -0.38 -2.57 16 12 C 0.15 1.55 11.31 -17.20 -0.19 1.36 16 13 N -0.51 -6.18 9.33 -10.74 -0.10 -6.28 16 14 C 0.35 4.75 7.31 -157.31 -1.15 3.60 16 15 C -0.10 -1.17 6.23 -91.77 -0.57 -1.74 16 16 C -0.15 -1.37 10.01 -26.69 -0.27 -1.64 16 17 C -0.15 -1.37 10.24 -26.69 -0.27 -1.65 16 18 N -0.49 -7.40 9.60 -7.32 -0.07 -7.47 16 19 C -0.15 -3.05 5.77 -26.61 -0.15 -3.20 16 20 C 0.17 4.13 5.03 -3.71 -0.02 4.12 16 21 N -0.59 -13.96 2.99 -164.78 -0.49 -14.45 16 22 C -0.25 -6.53 8.60 -15.06 -0.13 -6.66 16 23 H 0.07 1.80 6.21 -52.49 -0.33 1.47 16 24 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 25 N -0.90 -25.94 11.14 55.49 0.62 -25.32 16 26 Si 0.90 21.45 29.58 -169.99 -5.03 16.42 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.06 1.23 7.62 -51.93 -0.40 0.83 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.41 7.19 6.25 -40.82 -0.26 6.94 16 36 H 0.16 1.69 7.74 -52.49 -0.41 1.28 16 37 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 1.02 7.54 -51.93 -0.39 0.63 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 46 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -30.89 377.52 -10.63 -41.52 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.98 Total: 8.13 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -4.12 Total: 3.67 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -0.28 Total: -65.48 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.89 -10.63 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.501 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds