Wall clock time and date at job start Tue Mar 31 2020 17:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58932 * 2 1 4 4 C 1.53190 * 109.70167 * 239.64507 * 2 1 3 5 5 C 1.53036 * 109.31506 * 185.50702 * 4 2 1 6 6 H 1.08996 * 109.45370 * 181.37825 * 5 4 2 7 7 N 1.46502 * 109.46114 * 301.34376 * 5 4 2 8 8 C 1.34773 * 120.00265 * 205.06229 * 7 5 4 9 9 O 1.21477 * 120.00144 * 0.02562 * 8 7 5 10 10 C 1.48450 * 120.00113 * 180.02562 * 8 7 5 11 11 C 1.39542 * 120.55143 * 180.02562 * 10 8 7 12 12 C 1.38761 * 118.26155 * 180.02562 * 11 10 8 13 13 N 1.32207 * 119.15014 * 359.97438 * 12 11 10 14 14 C 1.31877 * 121.03558 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.04043 * 179.97438 * 14 13 12 16 16 C 1.53005 * 117.49901 * 351.25508 * 15 14 13 17 17 C 1.52999 * 117.49758 * 59.91315 * 15 14 13 18 18 N 1.31574 * 121.91813 * 0.27358 * 14 13 12 19 19 C 1.53046 * 109.53781 * 61.36439 * 5 4 2 20 20 C 1.53189 * 109.31155 * 298.63828 * 19 5 4 21 21 N 1.46920 * 109.58611 * 120.28611 * 2 1 3 22 22 C 1.36939 * 120.63517 * 353.55678 * 21 2 1 23 23 H 1.07997 * 119.99283 * 28.99989 * 22 21 2 24 24 C 1.38811 * 119.99908 * 209.00465 * 22 21 2 25 25 N 1.31613 * 120.00705 * 15.02555 * 24 22 21 26 26 Si 1.86807 * 119.99397 * 195.02700 * 24 22 21 27 27 H 1.48500 * 109.47167 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47017 * 120.00247 * 26 24 22 29 29 H 1.48501 * 109.46752 * 240.00077 * 26 24 22 30 30 H 1.09005 * 109.46541 * 299.71808 * 1 2 3 31 31 H 1.09001 * 109.47347 * 59.71170 * 1 2 3 32 32 H 1.08997 * 109.47049 * 179.71920 * 1 2 3 33 33 H 1.08998 * 109.49906 * 65.55564 * 4 2 1 34 34 H 1.09000 * 109.49987 * 305.46194 * 4 2 1 35 35 H 0.96996 * 119.99635 * 25.07138 * 7 5 4 36 36 H 1.07992 * 120.86547 * 359.97385 * 11 10 8 37 37 H 1.08002 * 120.42168 * 179.97438 * 12 11 10 38 38 H 1.09003 * 115.55344 * 205.57984 * 15 14 13 39 39 H 1.09002 * 117.49945 * 215.00335 * 16 15 14 40 40 H 1.09003 * 117.49828 * 0.02562 * 16 15 14 41 41 H 1.08994 * 117.50066 * 359.97438 * 17 15 14 42 42 H 1.09004 * 117.50333 * 144.99866 * 17 15 14 43 43 H 1.08998 * 109.49376 * 58.58775 * 19 5 4 44 44 H 1.08998 * 109.49727 * 178.68085 * 19 5 4 45 45 H 1.08997 * 109.58704 * 174.42207 * 20 19 5 46 46 H 1.09002 * 109.58831 * 294.69983 * 20 19 5 47 47 H 0.96998 * 120.00716 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2445 5 6 3.5705 -0.8444 -1.1675 6 1 3.9426 -1.3409 -2.0636 7 7 4.1573 0.4946 -1.0722 8 6 5.4209 0.7079 -1.4894 9 8 6.0733 -0.2101 -1.9449 10 6 6.0157 2.0646 -1.3923 11 6 7.3228 2.2984 -1.8213 12 6 7.8313 3.5845 -1.7082 13 7 7.0666 4.5371 -1.2025 14 6 5.8349 4.2819 -0.8065 15 6 5.0030 5.4016 -0.2363 16 6 5.7048 6.7326 0.0411 17 6 4.7332 6.6097 -1.1354 18 7 5.3132 3.0768 -0.8893 19 6 3.9602 -1.6608 0.0669 20 6 3.4654 -0.9426 1.3263 21 7 2.0225 -0.6981 1.1953 22 6 1.1533 -1.1134 2.1686 23 1 0.1365 -1.3700 1.9106 24 6 1.5793 -1.2044 3.4866 25 7 2.7006 -0.6237 3.8575 26 14 0.5607 -2.1512 4.7339 27 1 -0.6461 -2.7052 4.0692 28 1 1.3717 -3.2619 5.2943 29 1 0.1467 -1.2386 5.8298 30 1 -0.3632 0.5095 0.8926 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.7688 -0.1672 -2.1365 34 1 1.6079 -1.7257 -1.2906 35 1 3.6363 1.2277 -0.7088 36 1 7.9232 1.4991 -2.2298 37 1 8.8388 3.8044 -2.0291 38 1 4.2116 5.0975 0.4489 39 1 5.3752 7.3041 0.9088 40 1 6.7681 6.7985 -0.1893 41 1 5.1577 6.5949 -2.1391 42 1 3.7644 7.1005 -1.0417 43 1 3.5036 -2.6488 0.0085 44 1 5.0446 -1.7626 0.1083 45 1 3.6524 -1.5666 2.2002 46 1 3.9905 0.0064 1.4359 47 1 2.9981 -0.6870 4.7786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947766447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:31 Heat of formation + Delta-G solvation = 44.812840 kcal Electronic energy + Delta-G solvation = -28797.744910 eV Core-core repulsion = 24981.409120 eV Total energy + Delta-G solvation = -3816.335790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.43650 -41.02236 -39.26820 -37.92970 -36.02753 -35.05631 -34.08051 -32.98181 -32.71172 -31.36287 -28.09509 -27.08387 -26.55713 -26.09611 -23.93934 -23.32610 -23.19728 -22.25061 -21.61824 -20.30645 -19.31773 -18.80882 -18.20514 -17.15434 -16.90211 -16.72695 -16.65904 -16.47966 -15.92173 -15.70167 -15.56743 -15.46428 -15.14300 -14.90646 -14.71117 -14.42321 -14.14865 -13.37972 -13.25025 -13.20432 -12.88490 -12.69653 -12.47920 -12.40709 -12.35438 -12.16266 -12.06791 -11.98316 -11.97642 -11.89654 -11.72544 -11.57653 -11.44744 -11.37476 -11.01618 -10.52888 -10.44682 -10.38022 -10.11350 -8.60944 -7.82464 -5.28368 -0.65886 -0.16826 1.45673 1.48386 1.57512 1.57608 1.90745 2.51610 2.52938 2.58242 2.88418 3.14946 3.33108 3.46713 3.61408 3.65937 3.89102 3.89893 3.92935 4.04199 4.12037 4.15683 4.16465 4.40624 4.48575 4.55822 4.60848 4.64555 4.76410 4.79241 4.90492 4.93643 4.96105 5.00402 5.07715 5.11343 5.14038 5.22113 5.32117 5.38705 5.45033 5.52221 5.55592 5.72985 5.74078 5.75536 6.36080 6.43980 6.84908 6.98821 7.18753 7.91068 8.42815 9.24046 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003523 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.921616 B = 7945.370958 C = 8793.736985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.159 3.841 3 H 0.016 0.984 4 C -0.125 4.125 5 C 0.155 3.845 6 H 0.088 0.912 7 N -0.686 5.686 8 C 0.565 3.435 9 O -0.556 6.556 10 C 0.115 3.885 11 C -0.177 4.177 12 C 0.164 3.836 13 N -0.509 5.509 14 C 0.339 3.661 15 C -0.132 4.132 16 C -0.139 4.139 17 C -0.139 4.139 18 N -0.512 5.512 19 C -0.141 4.141 20 C 0.188 3.812 21 N -0.600 5.600 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.960 3.040 27 H -0.263 1.263 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.175 0.825 37 H 0.224 0.776 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.048 0.952 46 H -0.010 1.010 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 11.747 -14.250 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.033 0.967 4 C -0.164 4.164 5 C 0.051 3.949 6 H 0.106 0.894 7 N -0.336 5.336 8 C 0.349 3.651 9 O -0.434 6.434 10 C -0.031 4.031 11 C -0.200 4.200 12 C -0.003 4.003 13 N -0.223 5.223 14 C 0.072 3.928 15 C -0.152 4.152 16 C -0.177 4.177 17 C -0.177 4.177 18 N -0.229 5.229 19 C -0.181 4.181 20 C 0.062 3.938 21 N -0.324 5.324 22 C -0.375 4.375 23 H 0.096 0.904 24 C -0.249 4.249 25 N -0.587 5.587 26 Si 0.789 3.211 27 H -0.187 1.187 28 H -0.224 1.224 29 H -0.224 1.224 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.192 0.808 37 H 0.240 0.760 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.008 0.992 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.220 11.741 -14.045 19.334 hybrid contribution 0.063 -1.144 1.224 1.677 sum 6.283 10.596 -12.821 17.780 Atomic orbital electron populations 1.21727 0.94222 1.01600 1.01101 1.20644 0.94559 0.92884 0.86614 0.96681 1.22241 0.92519 1.02826 0.98822 1.20973 0.94198 0.81793 0.97928 0.89378 1.46050 1.13556 1.12972 1.61035 1.18079 0.82232 0.86632 0.78148 1.90731 1.61502 1.43673 1.47510 1.21660 0.93281 0.92971 0.95221 1.23204 0.95358 1.01323 1.00091 1.24085 1.00790 0.86605 0.88849 1.68146 1.05567 1.37238 1.11374 1.22492 0.88827 0.90202 0.91256 1.20769 1.02234 0.86405 1.05773 1.23107 0.99534 0.94681 1.00359 1.23069 1.02140 0.96689 0.95801 1.68037 1.39042 1.00809 1.14986 1.22383 0.99351 0.99642 0.96749 1.20372 0.83574 0.95377 0.94474 1.44358 1.02518 1.65704 1.19816 1.19580 0.95339 1.35948 0.86675 0.90355 1.25789 0.99001 1.01252 0.98878 1.70193 1.25367 1.46674 1.16426 0.85307 0.78647 0.77903 0.79238 1.18679 1.22371 1.22375 0.94087 0.90567 0.92831 0.89321 0.89830 0.75141 0.80772 0.75955 0.85939 0.86475 0.87464 0.88739 0.86087 0.91113 0.93416 0.93310 0.99208 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.95 71.98 0.57 -3.83 16 2 C 0.16 6.09 3.19 44.97 0.14 6.23 16 3 H 0.02 0.62 6.64 -2.39 -0.02 0.61 16 4 C -0.12 -3.89 5.08 30.67 0.16 -3.74 16 5 C 0.15 5.27 2.78 45.02 0.13 5.40 16 6 H 0.09 2.85 7.57 -2.39 -0.02 2.83 16 7 N -0.69 -23.59 4.26 -444.71 -1.89 -25.48 16 8 C 0.56 19.38 7.79 86.97 0.68 20.06 16 9 O -0.56 -20.75 16.09 -3.64 -0.06 -20.81 16 10 C 0.12 3.49 6.79 41.99 0.29 3.78 16 11 C -0.18 -4.04 9.72 22.71 0.22 -3.82 16 12 C 0.16 2.97 11.31 84.76 0.96 3.93 16 13 N -0.51 -11.58 9.33 -187.90 -1.75 -13.33 16 14 C 0.34 9.07 7.31 138.79 1.01 10.09 16 15 C -0.13 -2.94 6.23 -11.54 -0.07 -3.01 16 16 C -0.14 -2.30 10.01 30.62 0.31 -1.99 16 17 C -0.14 -2.25 10.24 30.62 0.31 -1.94 16 18 N -0.51 -15.84 9.60 -177.08 -1.70 -17.53 16 19 C -0.14 -5.67 5.77 30.67 0.18 -5.49 16 20 C 0.19 9.27 5.03 86.36 0.43 9.71 16 21 N -0.60 -28.96 2.99 -675.24 -2.02 -30.98 16 22 C -0.25 -12.96 8.60 84.03 0.72 -12.24 16 23 H 0.08 3.96 6.21 -2.91 -0.02 3.94 16 24 C -0.05 -3.04 4.96 84.86 0.42 -2.61 16 25 N -0.94 -56.30 11.14 21.65 0.24 -56.06 16 26 Si 0.96 44.97 29.58 68.60 2.03 47.00 16 27 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 29 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 30 H 0.04 1.56 7.62 -2.38 -0.02 1.54 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 1.83 7.44 -2.39 -0.02 1.81 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.41 14.56 6.25 -92.71 -0.58 13.98 16 36 H 0.17 3.38 7.74 -2.91 -0.02 3.36 16 37 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.12 2.93 8.14 -2.39 -0.02 2.92 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.83 7.54 -2.39 -0.02 1.81 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 46 H -0.01 -0.55 7.74 -2.39 -0.02 -0.57 16 47 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -69.54 377.52 1.71 -67.83 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.41 Total: 28.85 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 6.46 Total: 20.52 kcal Atomic # 7 Polarization: -136.26 SS G_CDS: -7.13 Total: -143.39 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.54 1.71 -67.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947766447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.639 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds