Wall clock time and date at job start Tue Mar 31 2020 17:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.58297 * 2 1 4 4 C 1.53192 * 109.58149 * 120.44265 * 2 1 3 5 5 C 1.53044 * 109.30724 * 174.43502 * 4 2 1 6 6 H 1.08993 * 109.46112 * 58.63347 * 5 4 2 7 7 N 1.46510 * 109.45515 * 178.60023 * 5 4 2 8 8 C 1.34776 * 119.99646 * 205.02676 * 7 5 4 9 9 O 1.21556 * 120.00046 * 359.97438 * 8 7 5 10 10 C 1.47833 * 119.99664 * 179.97438 * 8 7 5 11 11 C 1.39947 * 120.93756 * 179.97438 * 10 8 7 12 12 N 1.32148 * 118.92737 * 180.02562 * 11 10 8 13 13 C 1.31869 * 120.96206 * 0.02562 * 12 11 10 14 14 C 1.50703 * 118.95139 * 179.97438 * 13 12 11 15 15 C 1.52993 * 117.49832 * 171.37408 * 14 13 12 16 16 C 1.52996 * 117.49882 * 239.99823 * 14 13 12 17 17 N 1.31868 * 122.09955 * 0.26412 * 13 12 11 18 18 C 1.32147 * 120.96289 * 359.45365 * 17 13 12 19 19 C 1.53030 * 109.52921 * 298.61059 * 5 4 2 20 20 C 1.53199 * 109.31146 * 61.37326 * 19 5 4 21 21 N 1.46917 * 108.77677 * 305.36562 * 20 19 5 22 22 C 1.36940 * 120.63277 * 233.58290 * 21 20 19 23 23 H 1.08001 * 120.00038 * 151.55984 * 22 21 20 24 24 C 1.38808 * 119.99864 * 331.57151 * 22 21 20 25 25 N 1.31618 * 120.00193 * 160.52751 * 24 22 21 26 26 Si 1.86798 * 120.00005 * 340.52326 * 24 22 21 27 27 H 1.48507 * 109.47215 * 94.84522 * 26 24 22 28 28 H 1.48494 * 109.47485 * 214.84873 * 26 24 22 29 29 H 1.48499 * 109.47158 * 334.84882 * 26 24 22 30 30 H 1.08992 * 109.46870 * 180.28056 * 1 2 3 31 31 H 1.09000 * 109.46835 * 300.28565 * 1 2 3 32 32 H 1.09001 * 109.46793 * 60.28517 * 1 2 3 33 33 H 1.09001 * 109.50884 * 54.47848 * 4 2 1 34 34 H 1.08995 * 109.48532 * 294.37712 * 4 2 1 35 35 H 0.96997 * 120.00250 * 25.02997 * 7 5 4 36 36 H 1.07998 * 120.53750 * 0.02562 * 11 10 8 37 37 H 1.09003 * 115.56050 * 25.68271 * 14 13 12 38 38 H 1.09008 * 117.49803 * 214.97518 * 15 14 13 39 39 H 1.09002 * 117.50306 * 359.97438 * 15 14 13 40 40 H 1.08994 * 117.49844 * 359.97438 * 16 14 13 41 41 H 1.08999 * 117.49929 * 145.02051 * 16 14 13 42 42 H 1.08002 * 120.53743 * 180.27283 * 18 17 13 43 43 H 1.09000 * 109.49901 * 181.32814 * 19 5 4 44 44 H 1.09008 * 109.50023 * 301.39129 * 19 5 4 45 45 H 1.08995 * 109.58129 * 65.15572 * 20 19 5 46 46 H 1.09001 * 109.58427 * 185.57189 * 20 19 5 47 47 H 0.97002 * 120.00237 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 1.2443 5 6 3.5675 -0.8495 1.1690 6 1 4.0059 0.1459 1.0995 7 7 4.0651 -1.5189 2.3735 8 6 5.3291 -1.3052 2.7896 9 8 6.0563 -0.5575 2.1654 10 6 5.8311 -1.9801 4.0053 11 6 7.1401 -1.7729 4.4548 12 7 7.5476 -2.3970 5.5460 13 6 6.7412 -3.2042 6.2071 14 6 7.2533 -3.8931 7.4458 15 6 6.2396 -4.6588 8.2984 16 6 7.2594 -5.4231 7.4517 17 7 5.5027 -3.4321 5.8158 18 6 5.0112 -2.8454 4.7385 19 6 3.9569 -1.6657 -0.0655 20 6 3.4650 -0.9453 -1.3249 21 7 2.0226 -0.6981 -1.1954 22 6 1.1538 -1.1099 -2.1704 23 1 0.1334 -1.3558 -1.9158 24 6 1.5845 -1.2115 -3.4861 25 7 0.9111 -1.9483 -4.3440 26 14 3.1199 -0.3025 -4.0390 27 1 4.2910 -1.2119 -3.9545 28 1 2.9473 0.1532 -5.4417 29 1 3.3423 0.8737 -3.1602 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 1.6031 -1.7274 1.2888 34 1 1.7658 -0.1700 2.1364 35 1 3.4850 -2.1158 2.8714 36 1 7.8065 -1.1136 3.9185 37 1 8.0656 -3.3845 7.9650 38 1 6.3851 -4.6540 9.3787 39 1 5.2023 -4.6640 7.9637 40 1 6.8927 -5.9313 6.5600 41 1 8.0757 -5.9210 7.9750 42 1 3.9945 -3.0337 4.4267 43 1 5.0412 -1.7696 -0.1058 44 1 3.4987 -2.6531 -0.0083 45 1 3.9904 0.0037 -1.4316 46 1 3.6519 -1.5690 -2.1991 47 1 1.2120 -2.0190 -5.2635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947782509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:40 Heat of formation + Delta-G solvation = 64.687681 kcal Electronic energy + Delta-G solvation = -27869.420238 eV Core-core repulsion = 24053.946286 eV Total energy + Delta-G solvation = -3815.473952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68366 -39.83454 -38.05178 -37.36068 -35.01225 -34.15850 -32.73436 -32.31582 -31.54468 -30.07845 -26.78830 -26.19958 -25.03253 -24.55519 -22.78303 -22.76459 -22.25975 -21.20691 -20.46228 -19.55688 -18.22357 -18.11285 -17.09976 -16.47529 -16.02000 -15.69272 -15.43353 -15.23075 -14.78128 -14.59894 -14.49979 -14.32621 -13.88445 -13.81107 -13.42597 -13.27632 -12.70153 -12.53883 -12.04393 -12.00107 -11.89022 -11.84860 -11.41512 -11.36594 -11.27757 -11.22438 -11.08826 -10.93639 -10.65466 -10.44474 -10.25999 -10.18552 -10.02070 -9.74962 -9.74268 -9.68099 -9.43896 -8.96507 -8.64055 -6.98708 -5.95325 -3.33002 0.02947 0.63123 2.55488 2.92468 3.20147 3.27007 3.33666 3.49756 3.52499 3.53419 3.75395 4.05334 4.34873 4.40495 4.52775 4.53413 4.56770 4.60406 4.83464 4.87857 5.07888 5.22521 5.23436 5.32391 5.35140 5.37520 5.55334 5.63677 5.69098 5.76871 5.85079 5.91878 5.93974 6.02554 6.15623 6.19927 6.30198 6.34878 6.43381 6.46048 6.55067 6.62337 6.73772 6.91090 7.00876 7.35384 7.59834 7.95179 8.02395 8.33515 8.92207 9.71629 10.08269 11.20065 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.002422 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.655295 B =11556.628653 C =11905.450605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.033 0.967 4 C -0.136 4.136 5 C 0.151 3.849 6 H 0.086 0.914 7 N -0.715 5.715 8 C 0.566 3.434 9 O -0.529 6.529 10 C -0.245 4.245 11 C 0.212 3.788 12 N -0.517 5.517 13 C 0.365 3.635 14 C -0.109 4.109 15 C -0.152 4.152 16 C -0.153 4.153 17 N -0.519 5.519 18 C 0.188 3.812 19 C -0.141 4.141 20 C 0.130 3.870 21 N -0.602 5.602 22 C -0.259 4.259 23 H 0.092 0.908 24 C 0.024 3.976 25 N -0.909 5.909 26 Si 0.879 3.121 27 H -0.290 1.290 28 H -0.304 1.304 29 H -0.269 1.269 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.395 0.605 36 H 0.183 0.817 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.173 0.827 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 -3.516 24.308 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.068 3.932 3 H 0.050 0.950 4 C -0.176 4.176 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.365 5.365 8 C 0.351 3.649 9 O -0.406 6.406 10 C -0.253 4.253 11 C 0.045 3.955 12 N -0.230 5.230 13 C 0.100 3.900 14 C -0.129 4.129 15 C -0.189 4.189 16 C -0.191 4.191 17 N -0.232 5.232 18 C 0.020 3.980 19 C -0.182 4.182 20 C 0.004 3.996 21 N -0.327 5.327 22 C -0.387 4.387 23 H 0.110 0.890 24 C -0.175 4.175 25 N -0.552 5.552 26 Si 0.710 3.290 27 H -0.217 1.217 28 H -0.232 1.232 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.200 0.800 37 H 0.150 0.850 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.190 0.810 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.834 -3.465 24.473 26.602 hybrid contribution 0.358 0.596 -1.128 1.325 sum 10.192 -2.869 23.345 25.634 Atomic orbital electron populations 1.21808 0.94905 1.02006 1.00656 1.20369 0.93806 0.93364 0.85618 0.94978 1.22400 0.93170 1.02228 0.99814 1.21084 0.94680 0.96699 0.82769 0.89577 1.46193 1.12742 1.48381 1.29214 1.17749 0.82373 0.81410 0.83388 1.90812 1.56169 1.37035 1.56603 1.21883 0.98562 1.04351 1.00456 1.23535 0.92242 0.90925 0.88809 1.68294 1.37302 1.09339 1.08018 1.22404 0.85353 0.88806 0.93418 1.20714 1.03541 0.94360 0.94291 1.23057 0.96989 1.01330 0.97543 1.23010 1.02248 0.90881 1.02966 1.68142 1.14850 1.24862 1.15365 1.23468 0.99403 0.87368 0.87727 1.22412 1.00147 1.00010 0.95615 1.21308 0.85189 0.97280 0.95858 1.44493 1.01964 1.65729 1.20495 1.18920 0.95488 1.38527 0.85803 0.89012 1.25303 0.97589 0.98748 0.95856 1.69816 1.41253 1.39307 1.04852 0.86996 0.83436 0.81434 0.77154 1.21728 1.23215 1.19358 0.92317 0.94042 0.91503 0.91183 0.92066 0.76999 0.79962 0.85022 0.87963 0.87022 0.88404 0.87677 0.80980 0.92328 0.91517 0.95371 0.90732 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.94 37.16 0.30 -2.04 16 2 C 0.18 3.20 3.50 -67.59 -0.24 2.97 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.14 -1.98 4.84 -26.61 -0.13 -2.10 16 5 C 0.15 2.27 2.42 -67.89 -0.16 2.10 16 6 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 7 N -0.72 -8.50 5.03 -54.71 -0.28 -8.77 16 8 C 0.57 7.40 7.75 -12.34 -0.10 7.30 16 9 O -0.53 -8.82 16.11 5.32 0.09 -8.73 16 10 C -0.24 -2.65 5.91 -104.69 -0.62 -3.27 16 11 C 0.21 2.34 10.88 -16.78 -0.18 2.15 16 12 N -0.52 -5.81 10.32 -10.39 -0.11 -5.92 16 13 C 0.37 3.79 7.31 -157.07 -1.15 2.64 16 14 C -0.11 -0.84 6.23 -91.78 -0.57 -1.42 16 15 C -0.15 -0.93 10.00 -26.74 -0.27 -1.20 16 16 C -0.15 -0.96 10.23 -26.73 -0.27 -1.23 16 17 N -0.52 -5.22 9.32 -10.39 -0.10 -5.32 16 18 C 0.19 1.73 10.81 -16.78 -0.18 1.54 16 19 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 20 C 0.13 2.80 4.19 -3.71 -0.02 2.78 16 21 N -0.60 -13.58 2.76 -164.78 -0.45 -14.03 16 22 C -0.26 -6.88 9.06 -15.06 -0.14 -7.01 16 23 H 0.09 2.56 6.37 -52.49 -0.33 2.22 16 24 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 25 N -0.91 -27.39 13.97 55.49 0.78 -26.61 16 26 Si 0.88 22.30 24.35 -169.99 -4.14 18.16 16 27 H -0.29 -7.19 6.72 56.52 0.38 -6.81 16 28 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 29 H -0.27 -6.70 6.44 56.52 0.36 -6.34 16 30 H 0.06 1.05 7.45 -51.93 -0.39 0.66 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.27 7.61 -51.93 -0.40 0.87 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 3.47 6.74 -40.82 -0.28 3.19 16 36 H 0.18 1.83 7.74 -52.49 -0.41 1.42 16 37 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.11 0.79 7.53 -51.93 -0.39 0.40 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.17 1.05 6.54 -52.49 -0.34 0.71 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 45 H 0.03 0.62 6.95 -51.93 -0.36 0.26 16 46 H 0.07 1.77 4.61 -51.93 -0.24 1.53 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -32.63 372.93 -9.51 -42.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.95 Total: 2.32 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.97 Total: 1.16 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.16 Total: -60.66 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.63 -9.51 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947782509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.824 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds