Wall clock time and date at job start Tue Mar 31 2020 17:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.58297 * 2 1 4 4 C 1.53192 * 109.58149 * 120.44265 * 2 1 3 5 5 C 1.53044 * 109.30724 * 174.43502 * 4 2 1 6 6 H 1.08993 * 109.46112 * 58.63347 * 5 4 2 7 7 N 1.46510 * 109.45515 * 178.60023 * 5 4 2 8 8 C 1.34776 * 119.99646 * 205.02676 * 7 5 4 9 9 O 1.21556 * 120.00046 * 359.97438 * 8 7 5 10 10 C 1.47833 * 119.99664 * 179.97438 * 8 7 5 11 11 C 1.39947 * 120.93756 * 179.97438 * 10 8 7 12 12 N 1.32148 * 118.92737 * 180.02562 * 11 10 8 13 13 C 1.31869 * 120.96206 * 0.02562 * 12 11 10 14 14 C 1.50703 * 118.95139 * 179.97438 * 13 12 11 15 15 C 1.52993 * 117.49832 * 171.37408 * 14 13 12 16 16 C 1.52996 * 117.49882 * 239.99823 * 14 13 12 17 17 N 1.31868 * 122.09955 * 0.26412 * 13 12 11 18 18 C 1.32147 * 120.96289 * 359.45365 * 17 13 12 19 19 C 1.53030 * 109.52921 * 298.61059 * 5 4 2 20 20 C 1.53199 * 109.31146 * 61.37326 * 19 5 4 21 21 N 1.46917 * 108.77677 * 305.36562 * 20 19 5 22 22 C 1.36940 * 120.63277 * 233.58290 * 21 20 19 23 23 H 1.08001 * 120.00038 * 151.55984 * 22 21 20 24 24 C 1.38808 * 119.99864 * 331.57151 * 22 21 20 25 25 N 1.31618 * 120.00193 * 160.52751 * 24 22 21 26 26 Si 1.86798 * 120.00005 * 340.52326 * 24 22 21 27 27 H 1.48507 * 109.47215 * 94.84522 * 26 24 22 28 28 H 1.48494 * 109.47485 * 214.84873 * 26 24 22 29 29 H 1.48499 * 109.47158 * 334.84882 * 26 24 22 30 30 H 1.08992 * 109.46870 * 180.28056 * 1 2 3 31 31 H 1.09000 * 109.46835 * 300.28565 * 1 2 3 32 32 H 1.09001 * 109.46793 * 60.28517 * 1 2 3 33 33 H 1.09001 * 109.50884 * 54.47848 * 4 2 1 34 34 H 1.08995 * 109.48532 * 294.37712 * 4 2 1 35 35 H 0.96997 * 120.00250 * 25.02997 * 7 5 4 36 36 H 1.07998 * 120.53750 * 0.02562 * 11 10 8 37 37 H 1.09003 * 115.56050 * 25.68271 * 14 13 12 38 38 H 1.09008 * 117.49803 * 214.97518 * 15 14 13 39 39 H 1.09002 * 117.50306 * 359.97438 * 15 14 13 40 40 H 1.08994 * 117.49844 * 359.97438 * 16 14 13 41 41 H 1.08999 * 117.49929 * 145.02051 * 16 14 13 42 42 H 1.08002 * 120.53743 * 180.27283 * 18 17 13 43 43 H 1.09000 * 109.49901 * 181.32814 * 19 5 4 44 44 H 1.09008 * 109.50023 * 301.39129 * 19 5 4 45 45 H 1.08995 * 109.58129 * 65.15572 * 20 19 5 46 46 H 1.09001 * 109.58427 * 185.57189 * 20 19 5 47 47 H 0.97002 * 120.00237 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7313 1.2443 5 6 3.5675 -0.8495 1.1690 6 1 4.0059 0.1459 1.0995 7 7 4.0651 -1.5189 2.3735 8 6 5.3291 -1.3052 2.7896 9 8 6.0563 -0.5575 2.1654 10 6 5.8311 -1.9801 4.0053 11 6 7.1401 -1.7729 4.4548 12 7 7.5476 -2.3970 5.5460 13 6 6.7412 -3.2042 6.2071 14 6 7.2533 -3.8931 7.4458 15 6 6.2396 -4.6588 8.2984 16 6 7.2594 -5.4231 7.4517 17 7 5.5027 -3.4321 5.8158 18 6 5.0112 -2.8454 4.7385 19 6 3.9569 -1.6657 -0.0655 20 6 3.4650 -0.9453 -1.3249 21 7 2.0226 -0.6981 -1.1954 22 6 1.1538 -1.1099 -2.1704 23 1 0.1334 -1.3558 -1.9158 24 6 1.5845 -1.2115 -3.4861 25 7 0.9111 -1.9483 -4.3440 26 14 3.1199 -0.3025 -4.0390 27 1 4.2910 -1.2119 -3.9545 28 1 2.9473 0.1532 -5.4417 29 1 3.3423 0.8737 -3.1602 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 1.6031 -1.7274 1.2888 34 1 1.7658 -0.1700 2.1364 35 1 3.4850 -2.1158 2.8714 36 1 7.8065 -1.1136 3.9185 37 1 8.0656 -3.3845 7.9650 38 1 6.3851 -4.6540 9.3787 39 1 5.2023 -4.6640 7.9637 40 1 6.8927 -5.9313 6.5600 41 1 8.0757 -5.9210 7.9750 42 1 3.9945 -3.0337 4.4267 43 1 5.0412 -1.7696 -0.1058 44 1 3.4987 -2.6531 -0.0083 45 1 3.9904 0.0037 -1.4316 46 1 3.6519 -1.5690 -2.1991 47 1 1.2120 -2.0190 -5.2635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947782509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:39 Heat of formation + Delta-G solvation = 43.088709 kcal Electronic energy + Delta-G solvation = -27870.356840 eV Core-core repulsion = 24053.946286 eV Total energy + Delta-G solvation = -3816.410554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47901 -40.94681 -39.44733 -37.96070 -36.31532 -35.03018 -34.26868 -33.57782 -33.00482 -31.55790 -28.18744 -27.17934 -26.25104 -25.73313 -24.35987 -23.25531 -23.21444 -22.21599 -21.62409 -21.07080 -19.19850 -18.93122 -18.37480 -17.82493 -17.38194 -16.80259 -16.52552 -16.35498 -16.07215 -15.65454 -15.61045 -15.36339 -15.13720 -14.95413 -14.77009 -14.57933 -14.33659 -13.90810 -13.50187 -13.34113 -12.90014 -12.76349 -12.72184 -12.61803 -12.36349 -12.25352 -12.09032 -12.00786 -11.93216 -11.88784 -11.72477 -11.53941 -11.43422 -11.38029 -11.05351 -10.72367 -10.51804 -10.45274 -10.10964 -8.90120 -8.12538 -5.44028 -0.77356 -0.13217 1.28851 1.40220 1.47221 1.62659 1.90355 2.42913 2.47811 2.60063 2.82807 3.06758 3.12733 3.28398 3.31395 3.54033 3.71890 3.83200 3.85971 3.92467 3.93300 4.07821 4.19529 4.23408 4.31061 4.45483 4.56164 4.59446 4.63348 4.71820 4.79494 4.82331 4.91605 4.93376 5.01121 5.06168 5.07517 5.08415 5.17193 5.19920 5.31584 5.40249 5.49025 5.58849 5.69732 5.93268 6.21915 6.39268 6.83097 6.94976 7.04874 7.67067 8.07426 9.06710 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.002422 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.655295 B =11556.628653 C =11905.450605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.163 3.837 3 H 0.036 0.964 4 C -0.122 4.122 5 C 0.161 3.839 6 H 0.073 0.927 7 N -0.700 5.700 8 C 0.572 3.428 9 O -0.569 6.569 10 C -0.253 4.253 11 C 0.206 3.794 12 N -0.534 5.534 13 C 0.359 3.641 14 C -0.128 4.128 15 C -0.140 4.140 16 C -0.146 4.146 17 N -0.525 5.525 18 C 0.199 3.801 19 C -0.131 4.131 20 C 0.125 3.875 21 N -0.615 5.615 22 C -0.230 4.230 23 H 0.074 0.926 24 C -0.035 4.035 25 N -0.957 5.957 26 Si 0.931 3.069 27 H -0.286 1.286 28 H -0.315 1.315 29 H -0.263 1.263 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.414 0.586 36 H 0.184 0.816 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.206 0.794 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.048 0.952 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -3.784 27.870 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.053 0.947 4 C -0.161 4.161 5 C 0.056 3.944 6 H 0.091 0.909 7 N -0.351 5.351 8 C 0.358 3.642 9 O -0.449 6.449 10 C -0.260 4.260 11 C 0.039 3.961 12 N -0.247 5.247 13 C 0.095 3.905 14 C -0.148 4.148 15 C -0.178 4.178 16 C -0.184 4.184 17 N -0.239 5.239 18 C 0.031 3.969 19 C -0.171 4.171 20 C 0.000 4.000 21 N -0.340 5.340 22 C -0.360 4.360 23 H 0.092 0.908 24 C -0.229 4.229 25 N -0.604 5.604 26 Si 0.762 3.238 27 H -0.213 1.213 28 H -0.244 1.244 29 H -0.188 1.188 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.201 0.799 37 H 0.157 0.843 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.223 0.777 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.066 0.934 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.077 -3.735 28.113 30.097 hybrid contribution 0.269 0.667 -2.094 2.214 sum 10.346 -3.067 26.019 28.168 Atomic orbital electron populations 1.21739 0.94059 1.01539 1.01371 1.20707 0.94646 0.93611 0.85276 0.94664 1.22224 0.92220 1.02639 0.99029 1.20761 0.95148 0.95709 0.82746 0.90892 1.45865 1.12744 1.48302 1.28188 1.17964 0.82102 0.80664 0.83481 1.90801 1.57235 1.38872 1.57969 1.21632 0.98814 1.05472 1.00127 1.23650 0.92642 0.90901 0.88894 1.68353 1.37813 1.10145 1.08369 1.22965 0.85468 0.88253 0.93850 1.20899 1.04728 0.95191 0.93989 1.23123 0.96168 0.99950 0.98532 1.23083 1.02902 0.89698 1.02762 1.68268 1.14753 1.25134 1.15709 1.23969 1.00346 0.85813 0.86757 1.22240 0.99896 0.99885 0.95110 1.21254 0.84808 0.97024 0.96946 1.44674 1.01891 1.66459 1.20988 1.18941 0.95189 1.35460 0.86367 0.90832 1.25825 1.00282 1.00368 0.96466 1.69923 1.43507 1.41923 1.05060 0.86140 0.81081 0.80549 0.76026 1.21317 1.24395 1.18766 0.93369 0.89884 0.94231 0.90525 0.88297 0.74753 0.79880 0.84267 0.85856 0.87890 0.89484 0.85707 0.77743 0.92427 0.91410 0.95754 0.93372 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.94 71.98 0.57 -3.59 16 2 C 0.16 5.58 3.50 44.98 0.16 5.74 16 3 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.12 -3.06 4.84 30.67 0.15 -2.91 16 5 C 0.16 4.40 2.42 45.01 0.11 4.50 16 6 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 7 N -0.70 -14.35 5.03 -445.29 -2.24 -16.59 16 8 C 0.57 13.75 7.75 86.78 0.67 14.43 16 9 O -0.57 -18.39 16.11 -3.89 -0.06 -18.46 16 10 C -0.25 -4.98 5.91 -19.91 -0.12 -5.10 16 11 C 0.21 4.35 10.88 85.06 0.93 5.28 16 12 N -0.53 -11.45 10.32 -186.80 -1.93 -13.37 16 13 C 0.36 6.86 7.31 138.71 1.01 7.87 16 14 C -0.13 -1.74 6.23 -11.54 -0.07 -1.81 16 15 C -0.14 -1.36 10.00 30.59 0.31 -1.06 16 16 C -0.15 -1.51 10.23 30.59 0.31 -1.19 16 17 N -0.53 -9.34 9.32 -186.80 -1.74 -11.08 16 18 C 0.20 3.07 10.81 85.06 0.92 3.99 16 19 C -0.13 -4.43 5.65 30.67 0.17 -4.26 16 20 C 0.13 5.34 4.19 86.37 0.36 5.70 16 21 N -0.61 -27.26 2.76 -675.23 -1.86 -29.12 16 22 C -0.23 -12.32 9.06 84.03 0.76 -11.56 16 23 H 0.07 4.17 6.37 -2.91 -0.02 4.16 16 24 C -0.04 -2.03 5.24 84.86 0.45 -1.58 16 25 N -0.96 -59.52 13.97 21.65 0.30 -59.22 16 26 Si 0.93 47.29 24.35 68.60 1.67 48.97 16 27 H -0.29 -14.12 6.72 99.48 0.67 -13.45 16 28 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 29 H -0.26 -12.89 6.44 99.48 0.64 -12.25 16 30 H 0.05 1.63 7.45 -2.39 -0.02 1.62 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.46 7.61 -2.39 -0.02 1.45 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 5.44 6.74 -92.71 -0.62 4.81 16 36 H 0.18 3.67 7.74 -2.91 -0.02 3.64 16 37 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.12 0.67 8.14 -2.38 -0.02 0.66 16 39 H 0.10 1.21 7.53 -2.39 -0.02 1.19 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.21 1.60 6.54 -2.91 -0.02 1.58 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.02 1.06 6.95 -2.39 -0.02 1.04 16 46 H 0.05 2.30 4.61 -2.39 -0.01 2.29 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -73.04 372.93 1.09 -71.94 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.27 Total: 12.50 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.69 Total: 14.44 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -7.47 Total: -129.39 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.06 Total: -18.46 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.67 Total: 48.97 kcal Total: -73.04 1.09 -71.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947782509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.031 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds