Wall clock time and date at job start Tue Mar 31 2020 17:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70048 * 2 1 4 4 C 1.53183 * 109.58906 * 120.36055 * 2 1 3 5 5 C 1.53040 * 109.31302 * 65.15256 * 4 2 1 6 6 H 1.08994 * 109.46223 * 301.35451 * 5 4 2 7 7 N 1.46501 * 109.45768 * 181.38452 * 5 4 2 8 8 C 1.34783 * 119.99793 * 155.00156 * 7 5 4 9 9 O 1.21554 * 119.99851 * 0.02562 * 8 7 5 10 10 C 1.47826 * 120.00131 * 179.97438 * 8 7 5 11 11 C 1.39957 * 120.94070 * 359.72064 * 10 8 7 12 12 N 1.32147 * 118.92496 * 179.74049 * 11 10 8 13 13 C 1.31867 * 120.96768 * 0.52013 * 12 11 10 14 14 C 1.50702 * 118.95355 * 179.72523 * 13 12 11 15 15 C 1.52994 * 117.49656 * 8.77406 * 14 13 12 16 16 C 1.52997 * 117.49663 * 300.11158 * 14 13 12 17 17 N 1.31875 * 122.09401 * 359.75727 * 13 12 11 18 18 C 1.32143 * 120.96800 * 359.96869 * 17 13 12 19 19 C 1.53039 * 109.53873 * 61.36662 * 5 4 2 20 20 C 1.53189 * 109.30997 * 298.63496 * 19 5 4 21 21 N 1.46921 * 108.77686 * 54.63645 * 20 19 5 22 22 C 1.36945 * 120.63370 * 126.39263 * 21 20 19 23 23 H 1.07997 * 120.00115 * 207.67999 * 22 21 20 24 24 C 1.38810 * 119.99637 * 27.67841 * 22 21 20 25 25 N 1.31613 * 120.00470 * 17.36594 * 24 22 21 26 26 Si 1.86802 * 119.99489 * 197.37266 * 24 22 21 27 27 H 1.48499 * 109.47407 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47306 * 119.99984 * 26 24 22 29 29 H 1.48502 * 109.46787 * 239.99544 * 26 24 22 30 30 H 1.09006 * 109.47197 * 299.63842 * 1 2 3 31 31 H 1.09000 * 109.47877 * 59.64138 * 1 2 3 32 32 H 1.08998 * 109.47206 * 179.64197 * 1 2 3 33 33 H 1.09009 * 109.50094 * 185.10133 * 4 2 1 34 34 H 1.08995 * 109.50242 * 305.16520 * 4 2 1 35 35 H 0.97004 * 120.00720 * 334.99872 * 7 5 4 36 36 H 1.08006 * 120.53489 * 359.97438 * 11 10 8 37 37 H 1.08994 * 115.54894 * 154.44427 * 14 13 12 38 38 H 1.09004 * 117.50443 * 359.97438 * 15 14 13 39 39 H 1.08995 * 117.50109 * 145.02016 * 15 14 13 40 40 H 1.09003 * 117.49617 * 214.97122 * 16 14 13 41 41 H 1.09000 * 117.50214 * 359.97438 * 16 14 13 42 42 H 1.07999 * 120.53843 * 179.97438 * 18 17 13 43 43 H 1.09002 * 109.49629 * 58.58581 * 19 5 4 44 44 H 1.09001 * 109.49884 * 178.68215 * 19 5 4 45 45 H 1.09007 * 109.58819 * 174.42424 * 20 19 5 46 46 H 1.08998 * 109.58811 * 294.84541 * 20 19 5 47 47 H 0.97000 * 120.00650 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 6 1.6415 -2.2042 1.1699 6 1 0.5566 -2.2816 1.0989 7 7 2.1025 -2.8979 2.3750 8 6 1.4752 -4.0162 2.7904 9 8 0.5273 -4.4494 2.1647 10 6 1.9407 -4.7166 4.0061 11 6 3.0342 -4.2391 4.7376 12 7 3.4132 -4.8936 5.8212 13 6 2.7840 -5.9856 6.2092 14 6 3.2585 -6.6996 7.4486 15 6 4.3178 -6.0017 8.3040 16 6 4.6976 -7.2191 7.4573 17 7 1.7532 -6.4731 5.5467 18 6 1.3040 -5.8792 4.4551 19 6 2.2800 -2.8463 -0.0638 20 6 1.7691 -2.1409 -1.3239 21 7 2.0225 -0.6994 -1.1946 22 6 2.7047 -0.0207 -2.1689 23 1 3.2698 0.8641 -1.9158 24 6 2.6698 -0.4700 -3.4818 25 7 1.7371 -1.3168 -3.8631 26 14 3.9468 0.1271 -4.7074 27 1 4.8779 1.0674 -4.0337 28 1 4.7092 -1.0338 -5.2331 29 1 3.2679 0.8228 -5.8302 30 1 -0.3634 0.5082 0.8933 31 1 -0.3635 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 3.1298 -0.6504 1.2912 34 1 1.6080 -0.2783 2.1368 35 1 2.8591 -2.5525 2.8742 36 1 3.5574 -3.3479 4.4235 37 1 2.5057 -7.2942 7.9658 38 1 4.6718 -5.0263 7.9702 39 1 4.2620 -6.1375 9.3840 40 1 4.8915 -8.1553 7.9808 41 1 5.3010 -7.0449 6.5664 42 1 0.4595 -6.2848 3.9177 43 1 3.3640 -2.7473 -0.0055 44 1 2.0123 -3.9022 -0.1041 45 1 2.2943 -2.5272 -2.1975 46 1 0.6986 -2.3155 -1.4319 47 1 1.7129 -1.6310 -4.7804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947782511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:46 Heat of formation + Delta-G solvation = 39.594342 kcal Electronic energy + Delta-G solvation = -27884.743348 eV Core-core repulsion = 24068.181267 eV Total energy + Delta-G solvation = -3816.562081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.46673 -40.91967 -39.31796 -37.94194 -36.17277 -35.02736 -34.33540 -33.29655 -32.32709 -31.16972 -28.60657 -27.03899 -26.09751 -25.72432 -23.86430 -23.52499 -23.23227 -22.54347 -21.65149 -20.24815 -19.23634 -18.99719 -18.40144 -17.74921 -17.18932 -16.67040 -16.50647 -16.06007 -15.87543 -15.62221 -15.50464 -15.30946 -15.09006 -14.74170 -14.59568 -14.28150 -14.15742 -13.89558 -13.33528 -13.15847 -12.92522 -12.73052 -12.66167 -12.55305 -12.35685 -12.27593 -12.08161 -12.05278 -11.97337 -11.91307 -11.75682 -11.49958 -11.41856 -11.22632 -10.93005 -10.56857 -10.50146 -10.44057 -10.04323 -8.67843 -7.84947 -5.29359 -0.76086 -0.12806 1.46666 1.49259 1.58963 1.65014 1.94972 2.48902 2.52499 2.61021 2.83695 3.13184 3.29882 3.31500 3.54339 3.64299 3.74973 3.86057 3.90384 3.93749 4.08425 4.09039 4.28217 4.33017 4.45721 4.53418 4.62113 4.71933 4.75717 4.80238 4.86049 4.88972 4.92666 5.08898 5.09562 5.12994 5.17970 5.18428 5.32377 5.34915 5.45702 5.46056 5.56668 5.69959 5.70389 5.77852 6.41778 6.43212 6.83715 7.09083 7.17045 7.89342 8.40811 9.21695 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.002322 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.558151 B =12057.414168 C =12340.703251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.071 0.929 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.068 0.932 7 N -0.700 5.700 8 C 0.569 3.431 9 O -0.571 6.571 10 C -0.252 4.252 11 C 0.199 3.801 12 N -0.524 5.524 13 C 0.359 3.641 14 C -0.128 4.128 15 C -0.140 4.140 16 C -0.146 4.146 17 N -0.533 5.533 18 C 0.205 3.795 19 C -0.133 4.133 20 C 0.184 3.816 21 N -0.599 5.599 22 C -0.253 4.253 23 H 0.073 0.927 24 C -0.054 4.054 25 N -0.936 5.936 26 Si 0.963 3.037 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.297 1.297 30 H 0.075 0.925 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.206 0.794 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.183 0.817 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.052 0.948 46 H -0.009 1.009 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 -6.835 25.635 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.351 5.351 8 C 0.355 3.645 9 O -0.451 6.451 10 C -0.260 4.260 11 C 0.032 3.968 12 N -0.238 5.238 13 C 0.094 3.906 14 C -0.148 4.148 15 C -0.177 4.177 16 C -0.184 4.184 17 N -0.246 5.246 18 C 0.039 3.961 19 C -0.173 4.173 20 C 0.057 3.943 21 N -0.322 5.322 22 C -0.383 4.383 23 H 0.091 0.909 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.792 3.208 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.224 1.224 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.251 0.749 36 H 0.223 0.777 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.105 0.895 42 H 0.200 0.800 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.009 0.991 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.366 -7.631 25.860 27.491 hybrid contribution -0.044 0.561 -2.275 2.343 sum 5.322 -7.070 23.585 25.190 Atomic orbital electron populations 1.22200 0.98254 1.00338 1.00578 1.20719 0.92150 0.95591 0.86280 0.91067 1.22152 1.02173 0.92523 0.98960 1.20800 0.98615 0.92122 0.82705 0.91385 1.45909 1.34821 1.26173 1.28203 1.18009 0.82268 0.80639 0.83543 1.90806 1.29691 1.66646 1.57961 1.21637 1.02779 1.01444 1.00105 1.23965 0.89267 0.96901 0.86713 1.68266 1.31180 1.08769 1.15546 1.22981 0.86066 0.87649 0.93905 1.20897 0.94864 1.05131 0.93927 1.23135 0.98433 0.97671 0.98496 1.23098 0.92567 0.99995 1.02762 1.68351 1.14596 1.33398 1.08270 1.23634 0.95359 0.88214 0.88926 1.22337 1.00459 0.98320 0.96208 1.20423 0.95519 0.83693 0.94671 1.44396 1.64099 1.03596 1.20079 1.19561 1.21514 1.09949 0.87317 0.90942 1.25789 0.99554 1.00867 0.98711 1.70204 1.33691 1.37638 1.16758 0.85266 0.79179 0.77405 0.78949 1.18648 1.22152 1.22405 0.90650 0.95376 0.94630 0.90433 0.88754 0.74850 0.77712 0.84284 0.87877 0.85828 0.85686 0.89462 0.79994 0.91913 0.93715 0.92920 0.99062 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.02 71.98 0.65 -4.97 16 2 C 0.16 5.93 3.29 44.97 0.15 6.08 16 3 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 4 C -0.12 -3.30 5.02 30.67 0.15 -3.14 16 5 C 0.16 5.00 2.21 45.02 0.10 5.10 16 6 H 0.07 2.46 5.94 -2.39 -0.01 2.45 16 7 N -0.70 -16.26 5.04 -445.29 -2.24 -18.50 16 8 C 0.57 15.23 7.75 86.78 0.67 15.90 16 9 O -0.57 -20.39 16.11 -3.89 -0.06 -20.45 16 10 C -0.25 -5.43 5.91 -19.91 -0.12 -5.54 16 11 C 0.20 3.33 10.81 85.06 0.92 4.25 16 12 N -0.52 -9.80 9.32 -186.78 -1.74 -11.54 16 13 C 0.36 7.17 7.31 138.70 1.01 8.19 16 14 C -0.13 -1.82 6.23 -11.54 -0.07 -1.89 16 15 C -0.14 -1.42 10.01 30.62 0.31 -1.12 16 16 C -0.15 -1.57 10.24 30.62 0.31 -1.26 16 17 N -0.53 -12.06 10.31 -186.80 -1.93 -13.99 16 18 C 0.21 4.68 10.88 85.06 0.93 5.60 16 19 C -0.13 -5.06 5.65 30.67 0.17 -4.89 16 20 C 0.18 8.91 4.89 86.36 0.42 9.33 16 21 N -0.60 -28.54 2.70 -675.26 -1.82 -30.37 16 22 C -0.25 -13.38 9.59 84.03 0.81 -12.57 16 23 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 24 C -0.05 -2.99 4.91 84.86 0.42 -2.57 16 25 N -0.94 -55.74 11.19 21.65 0.24 -55.49 16 26 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 27 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 30 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.03 1.38 5.72 -2.39 -0.01 1.37 16 33 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.41 6.27 6.74 -92.71 -0.62 5.65 16 36 H 0.21 1.85 6.54 -2.91 -0.02 1.83 16 37 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 1.26 7.53 -2.38 -0.02 1.24 16 39 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.18 4.00 7.74 -2.91 -0.02 3.97 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 2.93 6.04 -2.38 -0.01 2.92 16 46 H -0.01 -0.47 7.48 -2.39 -0.02 -0.48 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -71.50 378.56 1.68 -69.82 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.37 Total: 17.53 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.83 Total: 16.49 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -7.49 Total: -129.89 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.50 1.68 -69.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947782511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.417 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds