Wall clock time and date at job start Tue Mar 31 2020 17:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.69978 * 2 1 4 4 C 1.52767 * 109.51111 * 239.88608 * 2 1 3 5 5 C 1.53034 * 109.38263 * 185.70171 * 4 2 1 6 6 H 1.08992 * 109.45380 * 301.22623 * 5 4 2 7 7 N 1.46505 * 109.45765 * 181.25636 * 5 4 2 8 8 C 1.34781 * 119.99824 * 154.93215 * 7 5 4 9 9 O 1.21553 * 120.00012 * 0.02562 * 8 7 5 10 10 C 1.47826 * 120.00034 * 180.02562 * 8 7 5 11 11 C 1.39969 * 120.93815 * 4.12274 * 10 8 7 12 12 N 1.32133 * 118.92458 * 180.02562 * 11 10 8 13 13 C 1.31885 * 120.96586 * 359.97438 * 12 11 10 14 14 N 1.31856 * 122.09558 * 359.97438 * 13 12 11 15 15 C 1.32162 * 120.96563 * 359.74413 * 14 13 12 16 16 C 1.50706 * 120.53735 * 180.26620 * 15 14 13 17 17 C 1.53001 * 117.49591 * 359.03898 * 16 15 14 18 18 C 1.52991 * 117.50118 * 290.37553 * 16 15 14 19 19 C 1.53039 * 109.53592 * 61.24096 * 5 4 2 20 20 C 1.53187 * 109.31515 * 298.63091 * 19 5 4 21 21 N 1.46921 * 109.58894 * 120.35422 * 2 1 3 22 22 C 1.36932 * 120.63189 * 353.42215 * 21 2 1 23 23 H 1.08006 * 119.99679 * 33.87011 * 22 21 2 24 24 C 1.38809 * 120.00197 * 213.86718 * 22 21 2 25 25 N 1.31618 * 119.99686 * 14.10015 * 24 22 21 26 26 Si 1.86796 * 120.00254 * 194.09251 * 24 22 21 27 27 H 1.48499 * 109.47581 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47300 * 300.00479 * 26 24 22 29 29 H 1.48504 * 109.47109 * 60.00377 * 26 24 22 30 30 H 1.09000 * 109.46936 * 299.64004 * 1 2 3 31 31 H 1.09001 * 109.46992 * 59.64110 * 1 2 3 32 32 H 1.09001 * 109.46713 * 179.63991 * 1 2 3 33 33 H 1.09000 * 109.56159 * 65.66821 * 4 2 1 34 34 H 1.09001 * 109.35613 * 305.61947 * 4 2 1 35 35 H 0.96997 * 119.99798 * 334.93921 * 7 5 4 36 36 H 1.07998 * 120.54141 * 0.03000 * 11 10 8 37 37 H 1.07998 * 118.95363 * 179.97438 * 13 12 11 38 38 H 1.09003 * 115.54488 * 144.70359 * 16 15 14 39 39 H 1.08993 * 117.50345 * 359.97438 * 17 16 15 40 40 H 1.08993 * 117.49605 * 145.02274 * 17 16 15 41 41 H 1.09002 * 117.50200 * 214.97867 * 18 16 15 42 42 H 1.09011 * 117.50050 * 359.97365 * 18 16 15 43 43 H 1.09008 * 109.49521 * 178.67737 * 19 5 4 44 44 H 1.09002 * 109.52457 * 58.60332 * 19 5 4 45 45 H 1.09007 * 109.58649 * 294.85290 * 20 19 5 46 46 H 1.08993 * 109.70921 * 174.49742 * 20 19 5 47 47 H 0.97007 * 119.99738 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0402 -0.7225 -1.2456 5 6 3.5639 -0.8460 -1.1727 6 1 4.0055 0.1477 -1.0995 7 7 4.0578 -1.5119 -2.3806 8 6 5.3217 -1.3000 -2.7979 9 8 6.0519 -0.5568 -2.1719 10 6 5.8200 -1.9715 -4.0170 11 6 4.9720 -2.7632 -4.8001 12 7 5.4594 -3.3454 -5.8815 13 6 6.7229 -3.1887 -6.2255 14 7 7.5556 -2.4513 -5.5174 15 6 7.1510 -1.8284 -4.4242 16 6 8.1095 -0.9832 -3.6253 17 6 9.5558 -0.8988 -4.1173 18 6 9.2202 -1.7059 -2.8606 19 6 3.9523 -1.6685 0.0580 20 6 3.4645 -0.9519 1.3210 21 7 2.0226 -0.6995 1.1944 22 6 1.1538 -1.1135 2.1685 23 1 0.1605 -1.4431 1.9015 24 6 1.5496 -1.1097 3.4989 25 7 2.6357 -0.4601 3.8605 26 14 0.5408 -2.0262 4.7762 27 1 1.1707 -1.8675 6.1116 28 1 -0.8365 -1.4720 4.8101 29 1 0.4858 -3.4675 4.4225 30 1 -0.3633 0.5082 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3633 -1.0277 -0.0065 33 1 1.7633 -0.1564 -2.1350 34 1 1.5964 -1.7168 -1.2938 35 1 3.4752 -2.1052 -2.8800 36 1 3.9361 -2.8959 -4.5251 37 1 7.0871 -3.6799 -7.1157 38 1 7.6808 -0.0918 -3.1673 39 1 9.8142 -1.4549 -5.0184 40 1 10.0788 0.0479 -3.9825 41 1 9.5226 -1.2898 -1.8996 42 1 9.2575 -2.7928 -2.9349 43 1 5.0364 -1.7760 0.0963 44 1 3.4910 -2.6543 -0.0022 45 1 3.9929 -0.0048 1.4309 46 1 3.6508 -1.5776 2.1938 47 1 2.9122 -0.4571 4.7903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947989703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:54 Heat of formation + Delta-G solvation = 60.332323 kcal Electronic energy + Delta-G solvation = -28464.417746 eV Core-core repulsion = 24648.754931 eV Total energy + Delta-G solvation = -3815.662815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.62083 -39.57766 -37.79373 -37.29717 -34.72609 -33.72302 -32.76178 -32.28141 -31.18455 -29.52043 -26.49105 -25.74035 -25.54714 -24.55353 -22.48866 -22.18062 -21.59430 -21.33410 -20.22741 -19.39693 -18.06795 -17.79178 -17.17344 -16.32273 -15.73212 -15.64613 -15.27171 -15.13430 -14.52374 -14.40004 -14.28738 -13.98111 -13.85441 -13.62446 -13.27697 -12.85915 -12.74249 -12.24174 -11.90960 -11.71342 -11.62555 -11.54826 -11.25524 -11.15595 -10.97910 -10.93279 -10.71758 -10.68071 -10.51933 -10.36636 -10.19462 -10.07673 -9.80027 -9.74435 -9.69391 -9.60738 -9.38669 -8.79770 -8.46185 -6.59975 -5.80143 -3.28607 0.15773 0.65830 2.75131 3.07291 3.36426 3.41148 3.42809 3.42963 3.61196 3.71185 3.78057 4.06016 4.44617 4.46761 4.61168 4.81099 4.87415 4.89035 5.05221 5.22473 5.32921 5.39361 5.47648 5.52508 5.55120 5.71329 5.71974 5.93076 5.94715 6.00467 6.09042 6.12780 6.20641 6.29427 6.35111 6.38889 6.45903 6.56764 6.60102 6.73973 6.80716 7.01855 7.08396 7.31084 7.49692 7.61928 7.67450 7.81304 8.18351 8.47561 9.20464 9.82603 10.42592 11.28620 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002807 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.268376 B = 9971.299060 C =10700.840666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.172 3.828 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.085 0.915 7 N -0.716 5.716 8 C 0.565 3.435 9 O -0.520 6.520 10 C -0.234 4.234 11 C 0.183 3.817 12 N -0.528 5.528 13 C 0.314 3.686 14 N -0.523 5.523 15 C 0.265 3.735 16 C -0.125 4.125 17 C -0.163 4.163 18 C -0.148 4.148 19 C -0.147 4.147 20 C 0.178 3.822 21 N -0.586 5.586 22 C -0.257 4.257 23 H 0.066 0.934 24 C 0.009 3.991 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.291 1.291 28 H -0.282 1.282 29 H -0.284 1.284 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.172 0.828 37 H 0.201 0.799 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.022 0.978 46 H 0.081 0.919 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -3.596 -18.703 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.175 4.175 5 C 0.049 3.951 6 H 0.103 0.897 7 N -0.366 5.366 8 C 0.350 3.650 9 O -0.398 6.398 10 C -0.242 4.242 11 C 0.017 3.983 12 N -0.242 5.242 13 C 0.027 3.973 14 N -0.237 5.237 15 C 0.119 3.881 16 C -0.143 4.143 17 C -0.201 4.201 18 C -0.186 4.186 19 C -0.187 4.187 20 C 0.052 3.948 21 N -0.309 5.309 22 C -0.386 4.386 23 H 0.084 0.916 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.730 3.270 27 H -0.217 1.217 28 H -0.208 1.208 29 H -0.210 1.210 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.227 0.773 36 H 0.189 0.811 37 H 0.217 0.783 38 H 0.172 0.828 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.040 0.960 46 H 0.099 0.901 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.449 -3.480 -18.879 20.974 hybrid contribution -1.171 -0.550 1.113 1.707 sum 7.278 -4.031 -17.766 19.618 Atomic orbital electron populations 1.21782 0.95703 1.01343 1.00376 1.20272 0.93138 0.93599 0.86551 0.95572 1.22336 0.93485 1.01781 0.99912 1.21109 0.94450 0.96813 0.82702 0.89693 1.46266 1.12603 1.48623 1.29106 1.17706 0.82375 0.81506 0.83439 1.90728 1.55450 1.37219 1.56356 1.21693 0.97018 1.04961 1.00478 1.23486 0.99830 0.87219 0.87810 1.68436 1.16093 1.22893 1.16751 1.25192 0.85056 0.90011 0.97013 1.68269 1.38807 1.09828 1.06773 1.21037 0.90477 0.88076 0.88555 1.21449 0.88587 1.02014 1.02294 1.23025 0.96067 1.02304 0.98672 1.22903 0.99959 0.98972 0.96784 1.22578 0.99822 0.99560 0.96766 1.20665 0.83607 0.97124 0.93413 1.44085 1.02865 1.64854 1.19139 1.19035 0.97063 1.37111 0.85438 0.91623 1.25213 0.97886 0.98660 0.97322 1.70005 1.25561 1.42116 1.16544 0.86426 0.79751 0.79956 0.80898 1.21666 1.20836 1.21004 0.91770 0.94367 0.92849 0.92569 0.91756 0.77307 0.81121 0.78271 0.82842 0.87627 0.88329 0.87720 0.89105 0.92788 0.92627 0.95960 0.90068 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.98 37.16 0.30 -2.10 16 2 C 0.17 3.37 3.48 -67.82 -0.24 3.13 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -2.12 4.81 -26.83 -0.13 -2.25 16 5 C 0.15 2.46 2.42 -67.89 -0.16 2.30 16 6 H 0.08 1.55 7.57 -51.93 -0.39 1.15 16 7 N -0.72 -9.22 5.03 -54.72 -0.28 -9.49 16 8 C 0.57 7.88 7.73 -12.34 -0.10 7.79 16 9 O -0.52 -8.78 13.15 5.32 0.07 -8.71 16 10 C -0.23 -2.80 5.91 -104.69 -0.62 -3.42 16 11 C 0.18 1.82 10.80 -16.77 -0.18 1.64 16 12 N -0.53 -5.39 10.42 -14.24 -0.15 -5.54 16 13 C 0.31 2.96 12.27 -92.02 -1.13 1.83 16 14 N -0.52 -5.81 9.44 -10.48 -0.10 -5.91 16 15 C 0.26 3.24 6.53 -81.82 -0.53 2.71 16 16 C -0.12 -1.50 4.86 -91.77 -0.45 -1.95 16 17 C -0.16 -1.60 10.05 -26.69 -0.27 -1.87 16 18 C -0.15 -1.58 10.24 -26.70 -0.27 -1.86 16 19 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 20 C 0.18 4.15 5.26 -3.71 -0.02 4.13 16 21 N -0.59 -13.91 2.97 -165.02 -0.49 -14.40 16 22 C -0.26 -6.69 8.43 -15.06 -0.13 -6.81 16 23 H 0.07 1.67 6.38 -52.48 -0.33 1.33 16 24 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 25 N -0.90 -25.68 11.48 55.49 0.64 -25.05 16 26 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.95 7.42 -51.93 -0.39 0.57 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.39 3.86 6.76 -40.82 -0.28 3.59 16 36 H 0.17 1.19 6.56 -52.49 -0.34 0.84 16 37 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.15 2.09 5.96 -51.93 -0.31 1.78 16 39 H 0.11 1.02 7.58 -51.93 -0.39 0.63 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 43 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 2.12 6.44 -51.93 -0.33 1.79 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -30.78 374.86 -10.80 -41.58 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.95 Total: 5.18 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -4.16 Total: 0.51 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.38 Total: -60.39 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.78 -10.80 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947989703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.915 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds