Wall clock time and date at job start Tue Mar 31 2020 17:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.69978 * 2 1 4 4 C 1.52767 * 109.51111 * 239.88608 * 2 1 3 5 5 C 1.53034 * 109.38263 * 185.70171 * 4 2 1 6 6 H 1.08992 * 109.45380 * 301.22623 * 5 4 2 7 7 N 1.46505 * 109.45765 * 181.25636 * 5 4 2 8 8 C 1.34781 * 119.99824 * 154.93215 * 7 5 4 9 9 O 1.21553 * 120.00012 * 0.02562 * 8 7 5 10 10 C 1.47826 * 120.00034 * 180.02562 * 8 7 5 11 11 C 1.39969 * 120.93815 * 4.12274 * 10 8 7 12 12 N 1.32133 * 118.92458 * 180.02562 * 11 10 8 13 13 C 1.31885 * 120.96586 * 359.97438 * 12 11 10 14 14 N 1.31856 * 122.09558 * 359.97438 * 13 12 11 15 15 C 1.32162 * 120.96563 * 359.74413 * 14 13 12 16 16 C 1.50706 * 120.53735 * 180.26620 * 15 14 13 17 17 C 1.53001 * 117.49591 * 359.03898 * 16 15 14 18 18 C 1.52991 * 117.50118 * 290.37553 * 16 15 14 19 19 C 1.53039 * 109.53592 * 61.24096 * 5 4 2 20 20 C 1.53187 * 109.31515 * 298.63091 * 19 5 4 21 21 N 1.46921 * 109.58894 * 120.35422 * 2 1 3 22 22 C 1.36932 * 120.63189 * 353.42215 * 21 2 1 23 23 H 1.08006 * 119.99679 * 33.87011 * 22 21 2 24 24 C 1.38809 * 120.00197 * 213.86718 * 22 21 2 25 25 N 1.31618 * 119.99686 * 14.10015 * 24 22 21 26 26 Si 1.86796 * 120.00254 * 194.09251 * 24 22 21 27 27 H 1.48499 * 109.47581 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47300 * 300.00479 * 26 24 22 29 29 H 1.48504 * 109.47109 * 60.00377 * 26 24 22 30 30 H 1.09000 * 109.46936 * 299.64004 * 1 2 3 31 31 H 1.09001 * 109.46992 * 59.64110 * 1 2 3 32 32 H 1.09001 * 109.46713 * 179.63991 * 1 2 3 33 33 H 1.09000 * 109.56159 * 65.66821 * 4 2 1 34 34 H 1.09001 * 109.35613 * 305.61947 * 4 2 1 35 35 H 0.96997 * 119.99798 * 334.93921 * 7 5 4 36 36 H 1.07998 * 120.54141 * 0.03000 * 11 10 8 37 37 H 1.07998 * 118.95363 * 179.97438 * 13 12 11 38 38 H 1.09003 * 115.54488 * 144.70359 * 16 15 14 39 39 H 1.08993 * 117.50345 * 359.97438 * 17 16 15 40 40 H 1.08993 * 117.49605 * 145.02274 * 17 16 15 41 41 H 1.09002 * 117.50200 * 214.97867 * 18 16 15 42 42 H 1.09011 * 117.50050 * 359.97365 * 18 16 15 43 43 H 1.09008 * 109.49521 * 178.67737 * 19 5 4 44 44 H 1.09002 * 109.52457 * 58.60332 * 19 5 4 45 45 H 1.09007 * 109.58649 * 294.85290 * 20 19 5 46 46 H 1.08993 * 109.70921 * 174.49742 * 20 19 5 47 47 H 0.97007 * 119.99738 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0402 -0.7225 -1.2456 5 6 3.5639 -0.8460 -1.1727 6 1 4.0055 0.1477 -1.0995 7 7 4.0578 -1.5119 -2.3806 8 6 5.3217 -1.3000 -2.7979 9 8 6.0519 -0.5568 -2.1719 10 6 5.8200 -1.9715 -4.0170 11 6 4.9720 -2.7632 -4.8001 12 7 5.4594 -3.3454 -5.8815 13 6 6.7229 -3.1887 -6.2255 14 7 7.5556 -2.4513 -5.5174 15 6 7.1510 -1.8284 -4.4242 16 6 8.1095 -0.9832 -3.6253 17 6 9.5558 -0.8988 -4.1173 18 6 9.2202 -1.7059 -2.8606 19 6 3.9523 -1.6685 0.0580 20 6 3.4645 -0.9519 1.3210 21 7 2.0226 -0.6995 1.1944 22 6 1.1538 -1.1135 2.1685 23 1 0.1605 -1.4431 1.9015 24 6 1.5496 -1.1097 3.4989 25 7 2.6357 -0.4601 3.8605 26 14 0.5408 -2.0262 4.7762 27 1 1.1707 -1.8675 6.1116 28 1 -0.8365 -1.4720 4.8101 29 1 0.4858 -3.4675 4.4225 30 1 -0.3633 0.5082 0.8932 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3633 -1.0277 -0.0065 33 1 1.7633 -0.1564 -2.1350 34 1 1.5964 -1.7168 -1.2938 35 1 3.4752 -2.1052 -2.8800 36 1 3.9361 -2.8959 -4.5251 37 1 7.0871 -3.6799 -7.1157 38 1 7.6808 -0.0918 -3.1673 39 1 9.8142 -1.4549 -5.0184 40 1 10.0788 0.0479 -3.9825 41 1 9.5226 -1.2898 -1.8996 42 1 9.2575 -2.7928 -2.9349 43 1 5.0364 -1.7760 0.0963 44 1 3.4910 -2.6543 -0.0022 45 1 3.9929 -0.0048 1.4309 46 1 3.6508 -1.5776 2.1938 47 1 2.9122 -0.4571 4.7903 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947989703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:53 Heat of formation + Delta-G solvation = 42.295770 kcal Electronic energy + Delta-G solvation = -28465.199869 eV Core-core repulsion = 24648.754931 eV Total energy + Delta-G solvation = -3816.444938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46809 -40.75645 -39.22130 -38.21664 -36.13242 -34.62576 -34.19382 -33.57031 -32.67738 -31.14114 -28.02229 -26.97606 -26.36214 -26.06710 -23.82238 -23.28745 -22.75154 -22.38176 -21.51744 -21.00447 -18.96673 -18.83603 -18.17308 -17.98901 -17.09589 -16.69517 -16.60319 -16.15776 -15.83571 -15.65683 -15.53494 -15.28397 -15.07116 -14.92948 -14.53962 -14.48258 -14.28952 -13.31657 -13.15067 -12.92731 -12.79103 -12.70226 -12.67263 -12.60627 -12.50979 -12.36782 -12.34949 -12.12893 -11.85118 -11.70009 -11.61166 -11.50388 -11.34463 -11.22613 -10.68073 -10.56070 -10.52818 -10.40310 -10.02619 -8.56567 -7.83486 -5.34345 -0.67281 -0.14769 1.48194 1.49928 1.56249 1.74831 1.97775 2.53058 2.56425 2.81005 2.94580 3.03409 3.26838 3.33211 3.54201 3.62975 3.72797 3.88116 3.97924 4.04856 4.07529 4.10924 4.28327 4.32518 4.41329 4.63467 4.65320 4.72181 4.75209 4.77352 4.83079 4.92973 4.97657 5.07686 5.09315 5.15168 5.18061 5.20208 5.28900 5.40305 5.47459 5.53843 5.58608 5.71387 5.74656 5.77116 6.45949 6.47121 6.89269 7.13956 7.19412 7.89597 8.44871 9.23543 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002807 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.268376 B = 9971.299060 C =10700.840666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.010 0.990 4 C -0.120 4.120 5 C 0.165 3.835 6 H 0.062 0.938 7 N -0.701 5.701 8 C 0.566 3.434 9 O -0.556 6.556 10 C -0.251 4.251 11 C 0.196 3.804 12 N -0.535 5.535 13 C 0.318 3.682 14 N -0.533 5.533 15 C 0.255 3.745 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.130 4.130 20 C 0.187 3.813 21 N -0.602 5.602 22 C -0.252 4.252 23 H 0.076 0.924 24 C -0.050 4.050 25 N -0.938 5.938 26 Si 0.962 3.038 27 H -0.300 1.300 28 H -0.273 1.273 29 H -0.277 1.277 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.412 0.588 36 H 0.203 0.797 37 H 0.236 0.764 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.062 0.938 45 H -0.011 1.011 46 H 0.045 0.955 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 -5.190 -21.864 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.027 0.973 4 C -0.159 4.159 5 C 0.061 3.939 6 H 0.080 0.920 7 N -0.353 5.353 8 C 0.353 3.647 9 O -0.435 6.435 10 C -0.258 4.258 11 C 0.029 3.971 12 N -0.249 5.249 13 C 0.033 3.967 14 N -0.247 5.247 15 C 0.109 3.891 16 C -0.162 4.162 17 C -0.181 4.181 18 C -0.189 4.189 19 C -0.170 4.170 20 C 0.060 3.940 21 N -0.326 5.326 22 C -0.383 4.383 23 H 0.093 0.907 24 C -0.246 4.246 25 N -0.584 5.584 26 Si 0.790 3.210 27 H -0.227 1.227 28 H -0.199 1.199 29 H -0.203 1.203 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.250 0.750 36 H 0.219 0.781 37 H 0.252 0.748 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.007 0.993 46 H 0.063 0.937 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.143 -5.100 -22.104 23.782 hybrid contribution -0.738 -0.021 2.004 2.135 sum 6.405 -5.121 -20.100 21.708 Atomic orbital electron populations 1.21701 0.93970 1.01680 1.01010 1.20548 0.94657 0.92905 0.86514 0.97256 1.22139 0.92325 1.02503 0.98925 1.20690 0.95085 0.95324 0.82832 0.92007 1.45896 1.12717 1.48658 1.27993 1.18011 0.82107 0.80891 0.83734 1.90731 1.56406 1.38777 1.57631 1.21497 0.97480 1.06540 1.00310 1.23939 1.00744 0.85520 0.86906 1.68569 1.16432 1.23086 1.16780 1.25972 0.84720 0.88748 0.97308 1.68331 1.39283 1.10442 1.06612 1.21114 0.90725 0.88249 0.89005 1.21354 0.89615 1.01823 1.03450 1.23071 0.94280 1.02597 0.98149 1.22922 0.99606 0.99021 0.97302 1.22306 0.99173 0.99576 0.95991 1.20365 0.83928 0.95271 0.94399 1.44348 1.02543 1.65584 1.20140 1.19415 0.97442 1.35500 0.85915 0.90661 1.25968 0.99144 1.00066 0.99413 1.70180 1.27609 1.44373 1.16238 0.85433 0.78505 0.78989 0.78059 1.22701 1.19896 1.20270 0.94393 0.90485 0.92584 0.88987 0.90353 0.74994 0.78089 0.74758 0.84987 0.87166 0.87022 0.87777 0.89104 0.93509 0.91923 0.99273 0.93658 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.98 71.98 0.57 -3.65 16 2 C 0.16 6.11 3.48 44.83 0.16 6.27 16 3 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 4 C -0.12 -3.40 4.81 30.53 0.15 -3.25 16 5 C 0.17 5.17 2.42 45.01 0.11 5.28 16 6 H 0.06 2.27 7.57 -2.39 -0.02 2.25 16 7 N -0.70 -16.56 5.03 -445.30 -2.24 -18.80 16 8 C 0.57 15.32 7.73 86.78 0.67 15.99 16 9 O -0.56 -19.22 13.15 -3.88 -0.05 -19.27 16 10 C -0.25 -5.60 5.91 -19.91 -0.12 -5.72 16 11 C 0.20 3.27 10.80 85.07 0.92 4.19 16 12 N -0.54 -9.16 10.42 -198.97 -2.07 -11.23 16 13 C 0.32 5.03 12.27 180.84 2.22 7.25 16 14 N -0.53 -10.78 9.44 -187.06 -1.77 -12.55 16 15 C 0.25 6.00 6.53 42.92 0.28 6.28 16 16 C -0.14 -3.47 4.86 -11.54 -0.06 -3.53 16 17 C -0.14 -2.71 10.05 30.62 0.31 -2.40 16 18 C -0.15 -3.22 10.24 30.62 0.31 -2.91 16 19 C -0.13 -4.95 5.65 30.67 0.17 -4.77 16 20 C 0.19 9.12 5.26 86.36 0.45 9.58 16 21 N -0.60 -28.99 2.97 -676.02 -2.01 -31.00 16 22 C -0.25 -13.24 8.43 84.03 0.71 -12.53 16 23 H 0.08 3.75 6.38 -2.91 -0.02 3.73 16 24 C -0.05 -2.79 4.94 84.86 0.42 -2.37 16 25 N -0.94 -56.09 11.48 21.65 0.25 -55.84 16 26 Si 0.96 44.34 29.58 68.60 2.03 46.37 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 30 H 0.04 1.45 7.66 -2.39 -0.02 1.43 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.84 7.42 -2.39 -0.02 1.82 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.41 6.54 6.76 -92.71 -0.63 5.91 16 36 H 0.20 1.90 6.56 -2.91 -0.02 1.88 16 37 H 0.24 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.13 3.79 5.96 -2.39 -0.01 3.77 16 39 H 0.11 1.98 7.58 -2.39 -0.02 1.96 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.09 1.91 8.14 -2.38 -0.02 1.90 16 43 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H -0.01 -0.59 8.14 -2.38 -0.02 -0.60 16 46 H 0.04 2.50 6.44 -2.39 -0.02 2.49 16 47 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -70.50 374.86 1.78 -68.71 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.37 Total: 19.90 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 7.28 Total: 13.70 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -7.84 Total: -129.42 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.27 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -70.50 1.78 -68.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947989703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.010 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds