Wall clock time and date at job start Tue Mar 31 2020 17:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.70273 * 2 1 4 4 C 1.52756 * 109.43582 * 120.16751 * 2 1 3 5 5 C 1.53040 * 109.38095 * 65.42310 * 4 2 1 6 6 H 1.08998 * 109.45245 * 301.22622 * 5 4 2 7 7 N 1.46500 * 109.45937 * 181.26031 * 5 4 2 8 8 C 1.34776 * 120.00259 * 154.93366 * 7 5 4 9 9 O 1.21564 * 119.99715 * 0.02562 * 8 7 5 10 10 C 1.47829 * 120.00473 * 180.02562 * 8 7 5 11 11 C 1.39964 * 120.93671 * 355.13529 * 10 8 7 12 12 N 1.32141 * 118.92453 * 180.02562 * 11 10 8 13 13 C 1.31879 * 120.96304 * 0.02562 * 12 11 10 14 14 N 1.31856 * 122.09891 * 0.02562 * 13 12 11 15 15 C 1.32161 * 120.96554 * 359.65390 * 14 13 12 16 16 C 1.50701 * 120.53715 * 180.33611 * 15 14 13 17 17 C 1.52994 * 117.50137 * 358.02119 * 16 15 14 18 18 C 1.52996 * 117.49828 * 289.39413 * 16 15 14 19 19 C 1.53039 * 109.53858 * 61.24449 * 5 4 2 20 20 C 1.53192 * 109.31068 * 298.63537 * 19 5 4 21 21 N 1.46918 * 108.78003 * 54.62994 * 20 19 5 22 22 C 1.36942 * 120.63272 * 126.36782 * 21 20 19 23 23 H 1.07993 * 120.00330 * 208.90499 * 22 21 20 24 24 C 1.38813 * 119.99684 * 28.89948 * 22 21 20 25 25 N 1.31614 * 120.00263 * 199.00936 * 24 22 21 26 26 Si 1.86802 * 119.99895 * 19.00320 * 24 22 21 27 27 H 1.48497 * 109.47596 * 269.99908 * 26 24 22 28 28 H 1.48498 * 109.47115 * 30.00444 * 26 24 22 29 29 H 1.48500 * 109.47000 * 150.00174 * 26 24 22 30 30 H 1.09001 * 109.46992 * 180.35528 * 1 2 3 31 31 H 1.09003 * 109.47260 * 300.35037 * 1 2 3 32 32 H 1.08999 * 109.47647 * 60.35345 * 1 2 3 33 33 H 1.09003 * 109.56338 * 305.38928 * 4 2 1 34 34 H 1.08995 * 109.36479 * 185.33400 * 4 2 1 35 35 H 0.97001 * 120.00194 * 334.93029 * 7 5 4 36 36 H 1.08000 * 120.54122 * 0.02592 * 11 10 8 37 37 H 1.08002 * 118.95168 * 179.97438 * 13 12 11 38 38 H 1.09009 * 115.55010 * 143.72812 * 16 15 14 39 39 H 1.09003 * 117.50044 * 0.02562 * 17 16 15 40 40 H 1.09000 * 117.50497 * 145.02217 * 17 16 15 41 41 H 1.08997 * 117.49916 * 214.97997 * 18 16 15 42 42 H 1.08997 * 117.50118 * 0.02562 * 18 16 15 43 43 H 1.09000 * 109.49961 * 178.68086 * 19 5 4 44 44 H 1.09004 * 109.52524 * 58.59774 * 19 5 4 45 45 H 1.09008 * 109.58422 * 294.84698 * 20 19 5 46 46 H 1.08995 * 109.70632 * 174.49610 * 20 19 5 47 47 H 0.97009 * 119.99738 * 355.72382 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2454 5 6 1.6410 -2.2000 1.1724 6 1 0.5565 -2.2809 1.0993 7 7 2.1015 -2.8897 2.3802 8 6 1.4761 -4.0082 2.7974 9 8 0.5302 -4.4452 2.1713 10 6 1.9404 -4.7038 4.0164 11 6 3.0876 -4.2774 4.6954 12 7 3.4671 -4.9287 5.7808 13 6 2.7826 -5.9650 6.2243 14 7 1.6973 -6.4005 5.6151 15 6 1.2430 -5.8045 4.5264 16 6 -0.0026 -6.3058 3.8422 17 6 -0.6806 -7.5456 4.4287 18 6 0.0851 -7.6451 3.1078 19 6 2.2844 -2.8430 -0.0583 20 6 1.7741 -2.1419 -1.3212 21 7 2.0225 -0.6994 -1.1946 22 6 2.7051 -0.0208 -2.1686 23 1 3.2828 0.8550 -1.9127 24 6 2.6546 -0.4587 -3.4849 25 7 3.5712 -0.0671 -4.3443 26 14 1.2858 -1.6040 -4.0363 27 1 1.7122 -3.0135 -3.8447 28 1 0.0663 -1.3419 -3.2304 29 1 0.9905 -1.3670 -5.4722 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3634 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.5988 -0.2724 2.1349 34 1 3.1240 -0.6413 1.2936 35 1 2.8566 -2.5413 2.8796 36 1 3.6536 -3.4298 4.3381 37 1 3.1222 -6.4737 7.1144 38 1 -0.6444 -5.5370 3.4119 39 1 -0.2259 -7.9985 5.3098 40 1 -1.7687 -7.5927 4.3845 41 1 -0.4992 -7.7576 2.1947 42 1 1.0437 -8.1639 3.1199 43 1 2.0202 -3.8998 -0.0968 44 1 3.3680 -2.7409 0.0018 45 1 0.7044 -2.3202 -1.4311 46 1 2.3004 -2.5281 -2.1941 47 1 4.2458 0.5758 -4.0747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947989704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:57 Heat of formation + Delta-G solvation = 62.791694 kcal Electronic energy + Delta-G solvation = -28734.518530 eV Core-core repulsion = 24918.962362 eV Total energy + Delta-G solvation = -3815.556168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.69267 -39.76868 -38.11265 -37.41709 -34.81133 -33.78667 -32.89899 -32.36216 -31.24759 -29.97115 -27.16328 -25.73877 -25.61007 -23.85432 -22.68057 -22.52734 -21.90460 -21.61071 -20.72971 -18.90355 -18.16020 -17.84582 -17.37403 -17.01146 -16.14455 -15.82627 -15.31261 -15.06216 -14.61413 -14.38878 -14.36130 -14.27950 -13.80216 -13.71383 -13.52519 -13.16797 -12.84934 -12.31519 -12.28638 -11.99514 -11.90587 -11.76848 -11.61453 -11.42166 -11.24407 -11.04808 -10.78670 -10.67941 -10.60023 -10.55485 -10.02386 -9.90266 -9.77946 -9.72048 -9.66861 -9.58495 -9.18909 -8.87748 -8.54730 -7.09468 -6.27285 -3.35775 0.08977 0.59692 2.65987 2.95795 3.33284 3.40067 3.53659 3.54096 3.65343 3.68752 3.70818 4.00508 4.36881 4.52351 4.56541 4.74433 4.79830 4.82304 4.90516 4.97934 5.07956 5.25461 5.36998 5.40674 5.49033 5.56255 5.65165 5.71155 5.78976 5.87740 5.92272 5.98827 6.03107 6.06136 6.07355 6.17190 6.28017 6.35787 6.44364 6.50967 6.56786 6.63865 6.71362 6.75910 6.97896 7.37982 7.61183 7.99428 8.06177 8.42301 9.03795 9.57819 10.17565 11.12613 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.003086 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.417137 B = 9072.492692 C = 9704.118023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.173 3.827 3 H 0.071 0.929 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.090 0.910 7 N -0.717 5.717 8 C 0.565 3.435 9 O -0.520 6.520 10 C -0.235 4.235 11 C 0.184 3.816 12 N -0.527 5.527 13 C 0.315 3.685 14 N -0.523 5.523 15 C 0.265 3.735 16 C -0.119 4.119 17 C -0.164 4.164 18 C -0.146 4.146 19 C -0.141 4.141 20 C 0.126 3.874 21 N -0.598 5.598 22 C -0.343 4.343 23 H 0.066 0.934 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 1.064 2.936 27 H -0.294 1.294 28 H -0.283 1.283 29 H -0.300 1.300 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.394 0.606 36 H 0.172 0.828 37 H 0.202 0.798 38 H 0.147 0.853 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -10.831 21.096 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.065 3.935 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.108 0.892 7 N -0.367 5.367 8 C 0.350 3.650 9 O -0.397 6.397 10 C -0.242 4.242 11 C 0.017 3.983 12 N -0.241 5.241 13 C 0.029 3.971 14 N -0.236 5.236 15 C 0.118 3.882 16 C -0.138 4.138 17 C -0.201 4.201 18 C -0.184 4.184 19 C -0.182 4.182 20 C 0.000 4.000 21 N -0.321 5.321 22 C -0.471 4.471 23 H 0.084 0.916 24 C -0.216 4.216 25 N -0.562 5.562 26 Si 0.896 3.104 27 H -0.222 1.222 28 H -0.209 1.209 29 H -0.228 1.228 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.189 0.811 37 H 0.218 0.782 38 H 0.165 0.835 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.094 0.906 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.357 -12.427 20.147 24.270 hybrid contribution 0.947 1.541 0.934 2.035 sum -4.410 -10.887 21.081 24.132 Atomic orbital electron populations 1.22355 0.98544 1.01116 1.00670 1.20361 0.91749 0.95510 0.85906 0.91052 1.22248 1.01610 0.93824 0.99785 1.21121 0.99991 0.91450 0.82652 0.89160 1.46217 1.34711 1.26765 1.29001 1.17718 0.83052 0.80725 0.83492 1.90759 1.27507 1.65149 1.56294 1.21665 1.00460 1.01496 1.00628 1.23496 0.90782 0.95665 0.88324 1.68446 1.32643 1.09241 1.13755 1.25211 0.85962 0.88853 0.97116 1.68274 1.14805 1.31450 1.09095 1.21020 0.92255 0.87014 0.87874 1.21261 0.95379 0.93517 1.03639 1.23032 0.99381 1.00039 0.97696 1.22877 1.02377 0.96542 0.96581 1.22403 1.00876 0.99155 0.95718 1.21353 0.97801 0.84807 0.95999 1.44432 1.64716 1.02141 1.20843 1.20215 1.25419 1.13783 0.87721 0.91641 1.26199 1.01303 1.02357 0.91773 1.70908 1.14719 1.32106 1.38445 0.83792 0.76561 0.75016 0.75007 1.22225 1.20874 1.22845 0.93224 0.93831 0.92489 0.92097 0.91560 0.77141 0.81106 0.78207 0.83519 0.87575 0.88334 0.87739 0.89085 0.92251 0.91767 0.95268 0.90590 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.02 37.16 0.34 -2.51 16 2 C 0.17 3.20 3.27 -67.82 -0.22 2.98 16 3 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 4 C -0.13 -1.99 4.99 -26.84 -0.13 -2.13 16 5 C 0.15 2.26 2.21 -67.89 -0.15 2.11 16 6 H 0.09 1.48 5.93 -51.93 -0.31 1.18 16 7 N -0.72 -8.59 5.03 -54.71 -0.28 -8.87 16 8 C 0.57 7.38 7.72 -12.34 -0.10 7.28 16 9 O -0.52 -8.20 13.26 5.31 0.07 -8.13 16 10 C -0.23 -2.65 5.91 -104.69 -0.62 -3.27 16 11 C 0.18 1.74 10.80 -16.77 -0.18 1.56 16 12 N -0.53 -5.17 10.42 -14.24 -0.15 -5.32 16 13 C 0.32 2.83 12.27 -92.03 -1.13 1.70 16 14 N -0.52 -5.52 9.45 -10.48 -0.10 -5.62 16 15 C 0.26 3.07 6.53 -81.82 -0.53 2.53 16 16 C -0.12 -1.34 4.68 -91.78 -0.43 -1.77 16 17 C -0.16 -1.50 10.04 -26.73 -0.27 -1.77 16 18 C -0.15 -1.47 10.23 -26.73 -0.27 -1.74 16 19 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 20 C 0.13 2.70 3.79 -3.71 -0.01 2.68 16 21 N -0.60 -13.61 2.47 -165.03 -0.41 -14.01 16 22 C -0.34 -9.31 9.90 -15.06 -0.15 -9.46 16 23 H 0.07 1.90 8.06 -52.49 -0.42 1.47 16 24 C -0.01 -0.43 5.25 -17.43 -0.09 -0.52 16 25 N -0.92 -28.29 13.70 55.49 0.76 -27.53 16 26 Si 1.06 26.33 24.69 -169.99 -4.20 22.13 16 27 H -0.29 -6.90 6.52 56.52 0.37 -6.53 16 28 H -0.28 -6.66 6.75 56.52 0.38 -6.28 16 29 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 30 H 0.05 0.85 5.74 -51.93 -0.30 0.55 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.39 3.59 6.76 -40.82 -0.28 3.31 16 36 H 0.17 1.12 6.57 -52.49 -0.34 0.78 16 37 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.15 1.85 6.26 -51.92 -0.33 1.52 16 39 H 0.11 0.97 7.58 -51.93 -0.39 0.58 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.03 0.62 6.48 -51.92 -0.34 0.29 16 46 H 0.08 1.79 4.50 -51.93 -0.23 1.55 16 47 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -32.24 367.54 -9.65 -41.88 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.78 Total: 4.89 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.11 Total: -4.96 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.17 Total: -61.35 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.20 Total: 22.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.24 -9.65 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947989704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.674 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds