Wall clock time and date at job start Tue Mar 31 2020 17:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.70273 * 2 1 4 4 C 1.52756 * 109.43582 * 120.16751 * 2 1 3 5 5 C 1.53040 * 109.38095 * 65.42310 * 4 2 1 6 6 H 1.08998 * 109.45245 * 301.22622 * 5 4 2 7 7 N 1.46500 * 109.45937 * 181.26031 * 5 4 2 8 8 C 1.34776 * 120.00259 * 154.93366 * 7 5 4 9 9 O 1.21564 * 119.99715 * 0.02562 * 8 7 5 10 10 C 1.47829 * 120.00473 * 180.02562 * 8 7 5 11 11 C 1.39964 * 120.93671 * 355.13529 * 10 8 7 12 12 N 1.32141 * 118.92453 * 180.02562 * 11 10 8 13 13 C 1.31879 * 120.96304 * 0.02562 * 12 11 10 14 14 N 1.31856 * 122.09891 * 0.02562 * 13 12 11 15 15 C 1.32161 * 120.96554 * 359.65390 * 14 13 12 16 16 C 1.50701 * 120.53715 * 180.33611 * 15 14 13 17 17 C 1.52994 * 117.50137 * 358.02119 * 16 15 14 18 18 C 1.52996 * 117.49828 * 289.39413 * 16 15 14 19 19 C 1.53039 * 109.53858 * 61.24449 * 5 4 2 20 20 C 1.53192 * 109.31068 * 298.63537 * 19 5 4 21 21 N 1.46918 * 108.78003 * 54.62994 * 20 19 5 22 22 C 1.36942 * 120.63272 * 126.36782 * 21 20 19 23 23 H 1.07993 * 120.00330 * 208.90499 * 22 21 20 24 24 C 1.38813 * 119.99684 * 28.89948 * 22 21 20 25 25 N 1.31614 * 120.00263 * 199.00936 * 24 22 21 26 26 Si 1.86802 * 119.99895 * 19.00320 * 24 22 21 27 27 H 1.48497 * 109.47596 * 269.99908 * 26 24 22 28 28 H 1.48498 * 109.47115 * 30.00444 * 26 24 22 29 29 H 1.48500 * 109.47000 * 150.00174 * 26 24 22 30 30 H 1.09001 * 109.46992 * 180.35528 * 1 2 3 31 31 H 1.09003 * 109.47260 * 300.35037 * 1 2 3 32 32 H 1.08999 * 109.47647 * 60.35345 * 1 2 3 33 33 H 1.09003 * 109.56338 * 305.38928 * 4 2 1 34 34 H 1.08995 * 109.36479 * 185.33400 * 4 2 1 35 35 H 0.97001 * 120.00194 * 334.93029 * 7 5 4 36 36 H 1.08000 * 120.54122 * 0.02592 * 11 10 8 37 37 H 1.08002 * 118.95168 * 179.97438 * 13 12 11 38 38 H 1.09009 * 115.55010 * 143.72812 * 16 15 14 39 39 H 1.09003 * 117.50044 * 0.02562 * 17 16 15 40 40 H 1.09000 * 117.50497 * 145.02217 * 17 16 15 41 41 H 1.08997 * 117.49916 * 214.97997 * 18 16 15 42 42 H 1.08997 * 117.50118 * 0.02562 * 18 16 15 43 43 H 1.09000 * 109.49961 * 178.68086 * 19 5 4 44 44 H 1.09004 * 109.52524 * 58.59774 * 19 5 4 45 45 H 1.09008 * 109.58422 * 294.84698 * 20 19 5 46 46 H 1.08995 * 109.70632 * 174.49610 * 20 19 5 47 47 H 0.97009 * 119.99738 * 355.72382 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2454 5 6 1.6410 -2.2000 1.1724 6 1 0.5565 -2.2809 1.0993 7 7 2.1015 -2.8897 2.3802 8 6 1.4761 -4.0082 2.7974 9 8 0.5302 -4.4452 2.1713 10 6 1.9404 -4.7038 4.0164 11 6 3.0876 -4.2774 4.6954 12 7 3.4671 -4.9287 5.7808 13 6 2.7826 -5.9650 6.2243 14 7 1.6973 -6.4005 5.6151 15 6 1.2430 -5.8045 4.5264 16 6 -0.0026 -6.3058 3.8422 17 6 -0.6806 -7.5456 4.4287 18 6 0.0851 -7.6451 3.1078 19 6 2.2844 -2.8430 -0.0583 20 6 1.7741 -2.1419 -1.3212 21 7 2.0225 -0.6994 -1.1946 22 6 2.7051 -0.0208 -2.1686 23 1 3.2828 0.8550 -1.9127 24 6 2.6546 -0.4587 -3.4849 25 7 3.5712 -0.0671 -4.3443 26 14 1.2858 -1.6040 -4.0363 27 1 1.7122 -3.0135 -3.8447 28 1 0.0663 -1.3419 -3.2304 29 1 0.9905 -1.3670 -5.4722 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3634 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.5988 -0.2724 2.1349 34 1 3.1240 -0.6413 1.2936 35 1 2.8566 -2.5413 2.8796 36 1 3.6536 -3.4298 4.3381 37 1 3.1222 -6.4737 7.1144 38 1 -0.6444 -5.5370 3.4119 39 1 -0.2259 -7.9985 5.3098 40 1 -1.7687 -7.5927 4.3845 41 1 -0.4992 -7.7576 2.1947 42 1 1.0437 -8.1639 3.1199 43 1 2.0202 -3.8998 -0.0968 44 1 3.3680 -2.7409 0.0018 45 1 0.7044 -2.3202 -1.4311 46 1 2.3004 -2.5281 -2.1941 47 1 4.2458 0.5758 -4.0747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947989704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:56 Heat of formation + Delta-G solvation = 42.373552 kcal Electronic energy + Delta-G solvation = -28735.403927 eV Core-core repulsion = 24918.962362 eV Total energy + Delta-G solvation = -3816.441565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48141 -40.89139 -39.45244 -38.22667 -36.15492 -34.72863 -34.33911 -33.45581 -32.84520 -31.47859 -28.60049 -26.66827 -26.36899 -25.48370 -24.32976 -23.42845 -23.16383 -22.40954 -21.77992 -20.38258 -19.49800 -18.94370 -18.54243 -18.04574 -17.36935 -16.70447 -16.40745 -16.13311 -16.04872 -15.70885 -15.52859 -15.30183 -15.20551 -15.08689 -14.70814 -14.48260 -14.27953 -13.94890 -13.59200 -13.12014 -13.05359 -12.79342 -12.74989 -12.55659 -12.50368 -12.36295 -12.19755 -11.97957 -11.73975 -11.60345 -11.57480 -11.36817 -11.30138 -11.11989 -10.78643 -10.60463 -10.55379 -10.41055 -10.05032 -9.09293 -8.46708 -5.52145 -0.68260 -0.15650 1.40775 1.53473 1.70613 1.73904 1.95132 2.52036 2.55595 2.80176 2.94351 3.01950 3.10735 3.27218 3.32865 3.54477 3.68351 3.79559 3.93523 3.98509 4.05505 4.10474 4.20343 4.26805 4.31402 4.40888 4.53618 4.62193 4.64225 4.71554 4.75220 4.80209 4.86523 4.93753 5.02152 5.02610 5.10710 5.12345 5.19172 5.22357 5.27625 5.29212 5.44974 5.57729 5.75960 5.82286 6.29249 6.43354 6.88329 6.93227 7.10120 7.59999 8.10213 8.89442 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.003086 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.417137 B = 9072.492692 C = 9704.118023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.061 0.939 4 C -0.122 4.122 5 C 0.163 3.837 6 H 0.082 0.918 7 N -0.704 5.704 8 C 0.568 3.432 9 O -0.550 6.550 10 C -0.250 4.250 11 C 0.194 3.806 12 N -0.537 5.537 13 C 0.318 3.682 14 N -0.533 5.533 15 C 0.255 3.745 16 C -0.135 4.135 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.132 4.132 20 C 0.123 3.877 21 N -0.612 5.612 22 C -0.320 4.320 23 H 0.037 0.963 24 C -0.070 4.070 25 N -0.962 5.962 26 Si 1.100 2.900 27 H -0.277 1.277 28 H -0.265 1.265 29 H -0.310 1.310 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.411 0.589 36 H 0.200 0.800 37 H 0.235 0.765 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.034 0.966 46 H 0.051 0.949 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -11.933 24.357 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.079 0.921 4 C -0.161 4.161 5 C 0.059 3.941 6 H 0.100 0.900 7 N -0.356 5.356 8 C 0.354 3.646 9 O -0.429 6.429 10 C -0.258 4.258 11 C 0.027 3.973 12 N -0.250 5.250 13 C 0.032 3.968 14 N -0.247 5.247 15 C 0.109 3.891 16 C -0.154 4.154 17 C -0.184 4.184 18 C -0.186 4.186 19 C -0.172 4.172 20 C -0.003 4.003 21 N -0.336 5.336 22 C -0.450 4.450 23 H 0.055 0.945 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.928 3.072 27 H -0.204 1.204 28 H -0.190 1.190 29 H -0.239 1.239 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.248 0.752 36 H 0.216 0.784 37 H 0.251 0.749 38 H 0.148 0.852 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.039 -13.536 23.492 27.777 hybrid contribution 1.196 1.910 0.065 2.254 sum -4.843 -11.626 23.558 26.713 Atomic orbital electron populations 1.22250 0.96922 1.01336 1.01384 1.20599 0.92965 0.95190 0.85610 0.92075 1.22082 1.01825 0.93253 0.98987 1.20778 0.99227 0.91510 0.82633 0.89973 1.45907 1.35181 1.26433 1.28050 1.17938 0.82471 0.80503 0.83675 1.90755 1.28881 1.65933 1.57347 1.21506 1.01669 1.02070 1.00513 1.23921 0.89915 0.95848 0.87656 1.68565 1.32834 1.09692 1.13937 1.25952 0.85006 0.88341 0.97459 1.68336 1.15604 1.31724 1.08989 1.21143 0.92416 0.87294 0.88281 1.21200 0.95791 0.93673 1.04755 1.23074 1.00083 0.98128 0.97074 1.22895 1.02553 0.95934 0.97259 1.22244 1.00614 0.99026 0.95323 1.21326 0.97769 0.84170 0.96992 1.44519 1.64968 1.02954 1.21163 1.20119 1.23872 1.12339 0.88706 0.94474 1.27220 1.02557 1.04244 0.92419 1.71008 1.16167 1.33912 1.39438 0.83314 0.75025 0.74671 0.74220 1.20420 1.19018 1.23900 0.93224 0.90296 0.94590 0.88516 0.91409 0.75155 0.78382 0.74875 0.85155 0.87378 0.86916 0.87570 0.89364 0.92013 0.92158 0.94824 0.93128 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 9.02 71.98 0.65 -4.40 16 2 C 0.16 5.74 3.27 44.83 0.15 5.89 16 3 H 0.06 2.27 7.93 -2.38 -0.02 2.25 16 4 C -0.12 -3.22 4.99 30.53 0.15 -3.07 16 5 C 0.16 4.44 2.21 45.02 0.10 4.54 16 6 H 0.08 2.47 5.93 -2.39 -0.01 2.46 16 7 N -0.70 -14.77 5.03 -445.29 -2.24 -17.01 16 8 C 0.57 13.65 7.72 86.78 0.67 14.32 16 9 O -0.55 -16.69 13.26 -3.92 -0.05 -16.74 16 10 C -0.25 -5.11 5.91 -19.91 -0.12 -5.23 16 11 C 0.19 3.06 10.80 85.06 0.92 3.98 16 12 N -0.54 -8.87 10.42 -198.97 -2.07 -10.94 16 13 C 0.32 4.78 12.27 180.84 2.22 6.99 16 14 N -0.53 -10.10 9.45 -187.06 -1.77 -11.86 16 15 C 0.25 5.49 6.53 42.92 0.28 5.77 16 16 C -0.14 -2.92 4.68 -11.54 -0.05 -2.97 16 17 C -0.15 -2.45 10.04 30.59 0.31 -2.15 16 18 C -0.15 -2.85 10.23 30.59 0.31 -2.54 16 19 C -0.13 -4.44 5.65 30.67 0.17 -4.26 16 20 C 0.12 5.14 3.79 86.36 0.33 5.46 16 21 N -0.61 -27.54 2.47 -676.04 -1.67 -29.21 16 22 C -0.32 -17.76 9.90 84.03 0.83 -16.93 16 23 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 24 C -0.07 -4.08 5.25 84.86 0.45 -3.64 16 25 N -0.96 -61.20 13.70 21.65 0.30 -60.91 16 26 Si 1.10 53.98 24.69 68.60 1.69 55.68 16 27 H -0.28 -12.71 6.52 99.48 0.65 -12.06 16 28 H -0.27 -12.07 6.75 99.48 0.67 -11.40 16 29 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 30 H 0.05 1.57 5.74 -2.39 -0.01 1.55 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 5.90 6.76 -92.71 -0.63 5.28 16 36 H 0.20 1.81 6.57 -2.91 -0.02 1.79 16 37 H 0.24 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.13 3.25 6.26 -2.38 -0.01 3.23 16 39 H 0.11 1.78 7.58 -2.39 -0.02 1.76 16 40 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.03 1.39 6.48 -2.38 -0.02 1.37 16 46 H 0.05 2.37 4.50 -2.39 -0.01 2.36 16 47 H 0.25 15.87 8.73 -92.70 -0.81 15.06 16 Total: -1.00 -72.33 367.54 1.80 -70.54 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.24 Total: 18.66 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 7.36 Total: 1.80 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -7.45 Total: -129.93 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.05 Total: -16.74 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 1.69 Total: 55.68 kcal Total: -72.33 1.80 -70.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947989704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.911 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds