Wall clock time and date at job start Tue Mar 31 2020 16:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46087 * 2 1 4 4 C 1.53142 * 109.46420 * 240.01978 * 2 1 3 5 5 C 1.53382 * 109.24983 * 170.19630 * 4 2 1 6 6 C 1.51108 * 108.18999 * 48.96873 * 5 4 2 7 7 N 1.29794 * 127.17352 * 164.32332 * 6 5 4 8 8 C 1.35888 * 108.84318 * 180.24422 * 7 6 5 9 9 C 1.47329 * 126.20374 * 179.79422 * 8 7 6 10 10 O 1.21625 * 119.99573 * 179.68913 * 9 8 7 11 11 N 1.34774 * 120.00276 * 359.68897 * 9 8 7 12 12 C 1.46504 * 119.99957 * 179.97438 * 11 9 8 13 13 H 1.09002 * 115.49068 * 350.38659 * 12 11 9 14 14 C 1.52997 * 117.44262 * 205.00204 * 12 11 9 15 15 H 1.08997 * 120.26365 * 3.83201 * 14 12 11 16 16 C 1.54392 * 118.12262 * 160.81234 * 14 12 11 17 17 N 1.48148 * 104.61487 * 87.19077 * 16 14 12 18 18 C 1.36939 * 127.83661 * 140.41732 * 17 16 14 19 19 H 1.08001 * 119.99846 * 195.56657 * 18 17 16 20 20 C 1.38812 * 119.99960 * 15.56944 * 18 17 16 21 21 N 1.31615 * 120.00008 * 9.10128 * 20 18 17 22 22 Si 1.86803 * 119.99932 * 189.09981 * 20 18 17 23 23 H 1.48499 * 109.46799 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46796 * 120.00100 * 22 20 18 25 25 H 1.48497 * 109.46936 * 239.99983 * 22 20 18 26 26 C 1.48152 * 104.32559 * 320.41501 * 17 16 14 27 27 C 1.52880 * 117.42513 * 135.63785 * 12 11 9 28 28 H 1.08995 * 120.24329 * 356.19801 * 27 12 11 29 29 C 1.36563 * 107.58224 * 359.52965 * 8 7 6 30 30 N 1.34868 * 106.78771 * 0.24926 * 29 8 7 31 31 C 1.46585 * 127.49978 * 180.02562 * 30 29 8 32 32 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47643 * 299.97862 * 1 2 3 34 34 H 1.09005 * 109.46804 * 59.98164 * 1 2 3 35 35 H 1.09000 * 109.50437 * 50.26518 * 4 2 1 36 36 H 1.09004 * 109.54303 * 290.15758 * 4 2 1 37 37 H 1.08994 * 109.72181 * 289.29104 * 5 4 2 38 38 H 1.09004 * 109.71814 * 168.63691 * 5 4 2 39 39 H 0.96994 * 120.00036 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.40351 * 328.40735 * 16 14 12 41 41 H 1.09000 * 110.40764 * 205.97387 * 16 14 12 42 42 H 0.97004 * 120.00036 * 180.02562 * 21 20 18 43 43 H 1.08995 * 110.40669 * 158.37419 * 26 17 16 44 44 H 1.09003 * 110.40266 * 280.68453 * 26 17 16 45 45 H 1.08005 * 126.60591 * 180.24712 * 29 8 7 46 46 H 1.08998 * 109.58178 * 282.60649 * 31 30 29 47 47 H 1.08997 * 109.58448 * 43.02688 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0403 -0.7215 -1.2507 5 6 3.5542 -0.5086 -1.3750 6 6 4.1858 -0.8207 -0.0383 7 7 5.4425 -1.0365 0.2041 8 6 5.5971 -1.2861 1.5308 9 6 6.8657 -1.5844 2.2182 10 8 6.8746 -1.7856 3.4176 11 7 8.0161 -1.6343 1.5179 12 6 9.2776 -1.9303 2.2015 13 1 9.2308 -1.9364 3.2905 14 6 10.5669 -1.4214 1.5539 15 1 10.5246 -0.8088 0.6533 16 6 11.8300 -1.3122 2.4350 17 7 12.4562 -2.6526 2.3585 18 6 13.7892 -2.9532 2.2695 19 1 14.1008 -3.9431 1.9705 20 6 14.7400 -1.9855 2.5636 21 7 14.3705 -0.8408 3.0978 22 14 16.5439 -2.3081 2.2013 23 1 16.6951 -3.6599 1.6054 24 1 17.0472 -1.2878 1.2469 25 1 17.3233 -2.2328 3.4630 26 6 11.3131 -3.5942 2.4002 27 6 10.2239 -2.9275 1.5326 28 1 9.9264 -3.4364 0.6158 29 6 4.3642 -1.2044 2.1124 30 7 3.4882 -0.9133 1.1291 31 6 2.0399 -0.7233 1.2516 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5135 0.8901 34 1 -0.3633 0.5142 -0.8899 35 1 1.5423 -0.3179 -2.1323 36 1 1.8280 -1.7875 -1.1688 37 1 3.7589 0.5272 -1.6457 38 1 3.9580 -1.1752 -2.1372 39 1 8.0090 -1.4734 0.5614 40 1 11.5565 -1.0786 3.4639 41 1 12.5054 -0.5540 2.0388 42 1 15.0349 -0.1644 3.3030 43 1 11.5986 -4.5575 1.9777 44 1 10.9603 -3.7185 3.4240 45 1 4.1348 -1.3458 3.1583 46 1 1.5504 -1.6932 1.3395 47 1 1.8238 -0.1213 2.1342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960544081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:42 Heat of formation + Delta-G solvation = 75.051723 kcal Electronic energy + Delta-G solvation = -27217.455122 eV Core-core repulsion = 23402.430588 eV Total energy + Delta-G solvation = -3815.024533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.68652 -39.50215 -38.21060 -37.51203 -34.35452 -33.79663 -32.56276 -31.91997 -30.15364 -29.05118 -27.15837 -27.03850 -25.60642 -24.46952 -23.35148 -22.01792 -21.30262 -20.29712 -19.76186 -19.51034 -19.15263 -17.77678 -16.79786 -16.48802 -16.27127 -16.04243 -15.28960 -15.05541 -14.66928 -14.44104 -14.32804 -14.21079 -13.99860 -13.63943 -13.49344 -13.12401 -13.02344 -12.78834 -12.66039 -12.11067 -12.06741 -11.72938 -11.50134 -11.43508 -11.41629 -11.39350 -10.92569 -10.79892 -10.46199 -10.28141 -10.09974 -10.05510 -9.98601 -9.85857 -9.66133 -9.05687 -8.71468 -8.63903 -8.15344 -6.79382 -5.73451 -3.07301 1.46949 2.22054 2.26823 3.35062 3.43081 3.48172 3.50841 3.57124 3.71317 3.88192 3.96510 4.04988 4.45752 4.49534 4.53523 4.58795 4.70751 4.77501 4.79446 4.88654 4.94431 5.09147 5.23476 5.25959 5.30207 5.31579 5.43445 5.47132 5.47950 5.51197 5.60029 5.67916 5.83142 5.93085 6.04224 6.23624 6.29827 6.39282 6.63987 6.71991 6.78993 6.97485 7.01284 7.44578 7.55411 7.61229 7.78384 7.88953 8.27393 8.47602 9.17453 9.80181 10.58064 11.41063 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.001899 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.898144 B =14741.511816 C =14998.245306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.122 4.122 5 C -0.034 4.034 6 C 0.208 3.792 7 N -0.457 5.457 8 C -0.058 4.058 9 C 0.606 3.394 10 O -0.546 6.546 11 N -0.683 5.683 12 C 0.102 3.898 13 H 0.132 0.868 14 C -0.180 4.180 15 H 0.103 0.897 16 C 0.186 3.814 17 N -0.594 5.594 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.156 3.844 27 C -0.187 4.187 28 H 0.103 0.897 29 C 0.036 3.964 30 N -0.455 5.455 31 C 0.106 3.894 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.407 0.593 40 H 0.026 0.974 41 H 0.091 0.909 42 H 0.254 0.746 43 H 0.051 0.949 44 H 0.027 0.973 45 H 0.189 0.811 46 H 0.089 0.911 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.301 2.643 -9.165 33.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.160 4.160 5 C -0.072 4.072 6 C -0.055 4.055 7 N -0.176 5.176 8 C -0.187 4.187 9 C 0.392 3.608 10 O -0.423 6.423 11 N -0.330 5.330 12 C -0.004 4.004 13 H 0.150 0.850 14 C -0.202 4.202 15 H 0.121 0.879 16 C 0.060 3.940 17 N -0.317 5.317 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.029 3.971 27 C -0.208 4.208 28 H 0.121 0.879 29 C -0.103 4.103 30 N -0.137 5.137 31 C -0.016 4.016 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.242 0.758 40 H 0.044 0.956 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.206 0.794 46 H 0.107 0.893 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -31.485 2.598 -8.805 32.796 hybrid contribution 0.252 -0.025 -0.072 0.263 sum -31.233 2.573 -8.877 32.572 Atomic orbital electron populations 1.21770 0.93025 1.02652 1.02832 1.21500 0.97106 1.00426 0.93565 0.89669 1.21781 0.94666 1.01451 0.98053 1.20242 0.93705 1.03605 0.89687 1.23495 0.87059 1.05444 0.89541 1.70383 1.15615 1.17180 1.14441 1.20634 0.93887 1.13732 0.90486 1.16818 0.81857 0.76358 0.85785 1.90793 1.86503 1.51063 1.13944 1.45159 1.05773 1.70059 1.11999 1.21808 0.79335 1.02258 0.96990 0.85046 1.24702 0.95378 0.97085 1.03002 0.87884 1.21056 0.88404 0.89805 0.94767 1.45203 1.00835 1.00351 1.85340 1.19045 0.79568 0.98038 1.38614 0.90498 1.24902 0.98143 0.97281 1.00083 1.69913 1.32523 1.07134 1.46568 0.86039 0.84727 0.77458 0.77490 1.20383 1.21678 1.21722 1.21117 0.87019 0.93313 0.95630 1.24367 1.00508 0.93538 1.02392 0.87906 1.22431 0.88879 1.03749 0.95251 1.45302 1.08538 1.51910 1.07958 1.22190 0.76740 1.02305 1.00397 0.92035 0.92005 0.91449 0.89691 0.90970 0.89010 0.88342 0.75848 0.95612 0.89085 0.93629 0.93079 0.95494 0.79404 0.89309 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.25 9.17 37.16 0.34 0.09 16 2 C -0.11 -0.35 2.73 -90.40 -0.25 -0.59 16 3 H 0.08 0.33 8.11 -51.93 -0.42 -0.10 16 4 C -0.12 -0.43 5.25 -26.46 -0.14 -0.56 16 5 C -0.03 -0.20 6.33 -27.49 -0.17 -0.37 16 6 C 0.21 2.10 7.64 -154.64 -1.18 0.92 16 7 N -0.46 -6.14 11.00 -7.01 -0.08 -6.21 16 8 C -0.06 -0.84 6.98 -82.98 -0.58 -1.42 16 9 C 0.61 10.40 7.81 -12.56 -0.10 10.31 16 10 O -0.55 -10.83 16.45 5.26 0.09 -10.74 16 11 N -0.68 -11.41 5.56 -54.97 -0.31 -11.71 16 12 C 0.10 1.93 5.97 -67.99 -0.41 1.52 16 13 H 0.13 2.73 7.40 -51.93 -0.38 2.34 16 14 C -0.18 -3.69 7.06 -89.12 -0.63 -4.32 16 15 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 16 C 0.19 4.68 5.70 -2.41 -0.01 4.67 16 17 N -0.59 -15.85 3.38 -168.85 -0.57 -16.42 16 18 C -0.22 -6.43 10.35 -15.06 -0.16 -6.58 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 20 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 21 N -0.91 -27.46 10.86 55.49 0.60 -26.86 16 22 Si 0.91 22.40 29.56 -169.99 -5.03 17.38 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C 0.16 3.49 7.03 -2.41 -0.02 3.47 16 27 C -0.19 -3.64 7.06 -89.18 -0.63 -4.27 16 28 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 29 C 0.04 0.41 11.32 -16.82 -0.19 0.22 16 30 N -0.46 -4.01 3.11 -113.39 -0.35 -4.36 16 31 C 0.11 0.48 6.25 -3.85 -0.02 0.46 16 32 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.08 0.17 8.12 -51.93 -0.42 -0.25 16 36 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.41 6.19 8.54 -40.82 -0.35 5.84 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 2.53 6.51 -51.93 -0.34 2.19 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.19 1.77 8.06 -52.48 -0.42 1.35 16 46 H 0.09 0.31 8.13 -51.93 -0.42 -0.11 16 47 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -35.17 382.01 -11.50 -46.67 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.38 Total: 3.27 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -4.24 Total: 3.23 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.70 Total: -65.57 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.17 -11.50 -46.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960544081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.721 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds