Wall clock time and date at job start Tue Mar 31 2020 16:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46087 * 2 1 4 4 C 1.53142 * 109.46420 * 240.01978 * 2 1 3 5 5 C 1.53382 * 109.24983 * 170.19630 * 4 2 1 6 6 C 1.51108 * 108.18999 * 48.96873 * 5 4 2 7 7 N 1.29794 * 127.17352 * 164.32332 * 6 5 4 8 8 C 1.35888 * 108.84318 * 180.24422 * 7 6 5 9 9 C 1.47329 * 126.20374 * 179.79422 * 8 7 6 10 10 O 1.21625 * 119.99573 * 179.68913 * 9 8 7 11 11 N 1.34774 * 120.00276 * 359.68897 * 9 8 7 12 12 C 1.46504 * 119.99957 * 179.97438 * 11 9 8 13 13 H 1.09002 * 115.49068 * 350.38659 * 12 11 9 14 14 C 1.52997 * 117.44262 * 205.00204 * 12 11 9 15 15 H 1.08997 * 120.26365 * 3.83201 * 14 12 11 16 16 C 1.54392 * 118.12262 * 160.81234 * 14 12 11 17 17 N 1.48148 * 104.61487 * 87.19077 * 16 14 12 18 18 C 1.36939 * 127.83661 * 140.41732 * 17 16 14 19 19 H 1.08001 * 119.99846 * 195.56657 * 18 17 16 20 20 C 1.38812 * 119.99960 * 15.56944 * 18 17 16 21 21 N 1.31615 * 120.00008 * 9.10128 * 20 18 17 22 22 Si 1.86803 * 119.99932 * 189.09981 * 20 18 17 23 23 H 1.48499 * 109.46799 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46796 * 120.00100 * 22 20 18 25 25 H 1.48497 * 109.46936 * 239.99983 * 22 20 18 26 26 C 1.48152 * 104.32559 * 320.41501 * 17 16 14 27 27 C 1.52880 * 117.42513 * 135.63785 * 12 11 9 28 28 H 1.08995 * 120.24329 * 356.19801 * 27 12 11 29 29 C 1.36563 * 107.58224 * 359.52965 * 8 7 6 30 30 N 1.34868 * 106.78771 * 0.24926 * 29 8 7 31 31 C 1.46585 * 127.49978 * 180.02562 * 30 29 8 32 32 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47643 * 299.97862 * 1 2 3 34 34 H 1.09005 * 109.46804 * 59.98164 * 1 2 3 35 35 H 1.09000 * 109.50437 * 50.26518 * 4 2 1 36 36 H 1.09004 * 109.54303 * 290.15758 * 4 2 1 37 37 H 1.08994 * 109.72181 * 289.29104 * 5 4 2 38 38 H 1.09004 * 109.71814 * 168.63691 * 5 4 2 39 39 H 0.96994 * 120.00036 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.40351 * 328.40735 * 16 14 12 41 41 H 1.09000 * 110.40764 * 205.97387 * 16 14 12 42 42 H 0.97004 * 120.00036 * 180.02562 * 21 20 18 43 43 H 1.08995 * 110.40669 * 158.37419 * 26 17 16 44 44 H 1.09003 * 110.40266 * 280.68453 * 26 17 16 45 45 H 1.08005 * 126.60591 * 180.24712 * 29 8 7 46 46 H 1.08998 * 109.58178 * 282.60649 * 31 30 29 47 47 H 1.08997 * 109.58448 * 43.02688 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0403 -0.7215 -1.2507 5 6 3.5542 -0.5086 -1.3750 6 6 4.1858 -0.8207 -0.0383 7 7 5.4425 -1.0365 0.2041 8 6 5.5971 -1.2861 1.5308 9 6 6.8657 -1.5844 2.2182 10 8 6.8746 -1.7856 3.4176 11 7 8.0161 -1.6343 1.5179 12 6 9.2776 -1.9303 2.2015 13 1 9.2308 -1.9364 3.2905 14 6 10.5669 -1.4214 1.5539 15 1 10.5246 -0.8088 0.6533 16 6 11.8300 -1.3122 2.4350 17 7 12.4562 -2.6526 2.3585 18 6 13.7892 -2.9532 2.2695 19 1 14.1008 -3.9431 1.9705 20 6 14.7400 -1.9855 2.5636 21 7 14.3705 -0.8408 3.0978 22 14 16.5439 -2.3081 2.2013 23 1 16.6951 -3.6599 1.6054 24 1 17.0472 -1.2878 1.2469 25 1 17.3233 -2.2328 3.4630 26 6 11.3131 -3.5942 2.4002 27 6 10.2239 -2.9275 1.5326 28 1 9.9264 -3.4364 0.6158 29 6 4.3642 -1.2044 2.1124 30 7 3.4882 -0.9133 1.1291 31 6 2.0399 -0.7233 1.2516 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5135 0.8901 34 1 -0.3633 0.5142 -0.8899 35 1 1.5423 -0.3179 -2.1323 36 1 1.8280 -1.7875 -1.1688 37 1 3.7589 0.5272 -1.6457 38 1 3.9580 -1.1752 -2.1372 39 1 8.0090 -1.4734 0.5614 40 1 11.5565 -1.0786 3.4639 41 1 12.5054 -0.5540 2.0388 42 1 15.0349 -0.1644 3.3030 43 1 11.5986 -4.5575 1.9777 44 1 10.9603 -3.7185 3.4240 45 1 4.1348 -1.3458 3.1583 46 1 1.5504 -1.6932 1.3395 47 1 1.8238 -0.1213 2.1342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960544081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:41 Heat of formation + Delta-G solvation = 52.902494 kcal Electronic energy + Delta-G solvation = -27218.415585 eV Core-core repulsion = 23402.430588 eV Total energy + Delta-G solvation = -3815.984996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.47191 -41.00553 -39.68751 -38.07296 -36.08617 -34.60186 -34.17131 -32.63156 -31.94206 -29.81372 -28.94673 -27.95007 -27.26799 -25.07561 -24.41405 -23.11744 -22.37264 -21.92085 -21.04798 -20.88074 -20.02959 -18.90561 -18.68166 -17.64122 -17.22629 -17.02819 -16.73883 -15.98124 -15.74180 -15.51327 -15.37682 -15.29127 -14.90096 -14.83496 -14.65039 -14.61442 -14.08330 -13.77357 -13.39649 -13.36428 -13.23241 -13.10897 -12.89865 -12.74707 -12.43307 -12.11978 -12.01980 -12.00209 -11.88362 -11.81971 -11.68768 -11.68360 -11.39003 -11.15702 -10.85277 -10.72896 -10.69923 -9.83196 -9.45548 -8.93266 -7.91776 -5.29080 0.48964 1.31289 1.46992 1.48192 1.57409 1.59638 2.06379 2.35741 2.48955 2.87188 3.09606 3.28879 3.42899 3.57305 3.58682 3.70875 3.81898 3.90523 3.91822 4.04914 4.12121 4.25734 4.35007 4.37739 4.39694 4.46148 4.49469 4.57498 4.71045 4.79679 4.87462 4.91420 4.94166 4.97258 5.00747 5.10873 5.16059 5.26198 5.31032 5.39639 5.41463 5.42679 5.44461 5.52399 5.62798 6.02804 6.15667 6.43671 6.82946 6.99491 7.16700 7.66226 8.45323 9.22600 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.037885 B = 0.001899 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.898144 B =14741.511816 C =14998.245306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.081 0.919 4 C -0.116 4.116 5 C -0.035 4.035 6 C 0.211 3.789 7 N -0.489 5.489 8 C -0.098 4.098 9 C 0.604 3.396 10 O -0.581 6.581 11 N -0.675 5.675 12 C 0.121 3.879 13 H 0.111 0.889 14 C -0.180 4.180 15 H 0.122 0.878 16 C 0.191 3.809 17 N -0.616 5.616 18 C -0.241 4.241 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.151 3.849 27 C -0.168 4.168 28 H 0.131 0.869 29 C 0.048 3.952 30 N -0.447 5.447 31 C 0.096 3.904 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.416 0.584 40 H -0.002 1.002 41 H 0.060 0.940 42 H 0.250 0.750 43 H 0.065 0.935 44 H 0.021 0.979 45 H 0.204 0.796 46 H 0.104 0.896 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.971 2.186 -11.128 36.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.073 4.073 6 C -0.054 4.054 7 N -0.209 5.209 8 C -0.225 4.225 9 C 0.393 3.607 10 O -0.461 6.461 11 N -0.323 5.323 12 C 0.014 3.986 13 H 0.129 0.871 14 C -0.201 4.201 15 H 0.140 0.860 16 C 0.065 3.935 17 N -0.341 5.341 18 C -0.369 4.369 19 H 0.102 0.898 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.812 3.188 23 H -0.187 1.187 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.025 3.975 27 C -0.190 4.190 28 H 0.148 0.852 29 C -0.093 4.093 30 N -0.127 5.127 31 C -0.024 4.024 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.253 0.747 40 H 0.016 0.984 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.039 0.961 45 H 0.221 0.779 46 H 0.122 0.878 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -34.213 2.127 -10.805 35.942 hybrid contribution 0.935 0.127 0.568 1.102 sum -33.278 2.254 -10.237 34.890 Atomic orbital electron populations 1.21739 0.91526 1.03144 1.03387 1.21492 0.98138 0.99842 0.92644 0.90084 1.21792 0.92778 1.01691 0.99127 1.20474 0.95211 1.04165 0.87483 1.24264 0.86452 1.03459 0.91187 1.70305 1.17764 1.18807 1.14005 1.20335 0.93457 1.17222 0.91522 1.17244 0.82691 0.75311 0.85473 1.90762 1.87126 1.52768 1.15462 1.45012 1.04862 1.70089 1.12311 1.21396 0.79892 1.01230 0.96070 0.87107 1.24395 0.94329 0.98468 1.02902 0.86017 1.20777 0.89828 0.88889 0.93986 1.45498 1.01376 1.01636 1.85545 1.19455 0.80810 0.98423 1.38236 0.89820 1.25807 1.02632 0.97133 1.00224 1.70114 1.33708 1.08036 1.47808 0.84934 0.79021 0.77875 0.76985 1.18718 1.21631 1.21865 1.21239 0.86693 0.93536 0.96033 1.24289 0.99543 0.92501 1.02629 0.85156 1.22658 0.88445 1.01983 0.96262 1.45575 1.09972 1.50281 1.06910 1.22622 0.74086 1.03766 1.01958 0.91562 0.91637 0.90784 0.87553 0.90951 0.88086 0.88008 0.74739 0.98380 0.92121 0.94053 0.91678 0.96126 0.77928 0.87758 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.01 9.17 71.98 0.66 0.65 16 2 C -0.10 -0.34 2.73 -10.65 -0.03 -0.37 16 3 H 0.08 0.38 8.11 -2.39 -0.02 0.36 16 4 C -0.12 -0.44 5.25 30.77 0.16 -0.28 16 5 C -0.03 -0.33 6.33 30.11 0.19 -0.14 16 6 C 0.21 3.92 7.64 138.06 1.05 4.98 16 7 N -0.49 -12.79 11.00 -176.08 -1.94 -14.73 16 8 C -0.10 -2.79 6.98 40.52 0.28 -2.51 16 9 C 0.60 21.01 7.81 86.64 0.68 21.68 16 10 O -0.58 -23.63 16.45 -4.11 -0.07 -23.70 16 11 N -0.67 -22.50 5.56 -446.07 -2.48 -24.98 16 12 C 0.12 4.61 5.97 44.95 0.27 4.88 16 13 H 0.11 4.77 7.40 -2.39 -0.02 4.76 16 14 C -0.18 -7.41 7.06 -9.82 -0.07 -7.48 16 15 H 0.12 4.57 8.14 -2.39 -0.02 4.55 16 16 C 0.19 10.05 5.70 86.54 0.49 10.55 16 17 N -0.62 -33.61 3.38 -688.13 -2.33 -35.94 16 18 C -0.24 -13.96 10.35 84.03 0.87 -13.09 16 19 H 0.08 4.61 7.85 -2.91 -0.02 4.59 16 20 C -0.06 -3.77 5.40 84.86 0.46 -3.31 16 21 N -0.95 -58.88 10.86 21.65 0.24 -58.64 16 22 Si 0.98 46.61 29.56 68.60 2.03 48.64 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 C 0.15 6.76 7.03 86.53 0.61 7.37 16 27 C -0.17 -6.44 7.06 -9.86 -0.07 -6.51 16 28 H 0.13 4.33 8.14 -2.39 -0.02 4.31 16 29 C 0.05 1.04 11.32 83.83 0.95 1.99 16 30 N -0.45 -6.99 3.11 -512.66 -1.60 -8.59 16 31 C 0.10 0.60 6.25 86.46 0.54 1.14 16 32 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 35 H 0.11 0.01 8.12 -2.39 -0.02 -0.01 16 36 H 0.07 0.31 8.12 -2.39 -0.02 0.29 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.42 12.39 8.54 -92.71 -0.79 11.60 16 40 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.06 3.53 6.51 -2.39 -0.02 3.52 16 42 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.20 3.60 8.06 -2.91 -0.02 3.57 16 46 H 0.10 0.39 8.13 -2.39 -0.02 0.37 16 47 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -78.85 382.01 1.09 -77.76 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.19 Total: 20.63 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 7.05 Total: 19.55 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -8.10 Total: -142.88 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.07 Total: -23.70 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -78.85 1.09 -77.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960544081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.661 kcal (2) G-P(sol) polarization free energy of solvation -78.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds