Wall clock time and date at job start Tue Mar 31 2020 17:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.54503 * 2 1 4 4 C 1.53137 * 109.50697 * 239.88846 * 2 1 3 5 5 C 1.53230 * 109.52536 * 170.26126 * 4 2 1 6 6 N 1.46583 * 108.78833 * 50.58056 * 5 4 2 7 7 C 1.34866 * 127.50286 * 162.79258 * 6 5 4 8 8 C 1.36576 * 106.78526 * 180.13442 * 7 6 5 9 9 C 1.47324 * 126.21475 * 179.97438 * 8 7 6 10 10 O 1.21629 * 119.99300 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00136 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99760 * 180.02562 * 11 9 8 13 13 H 1.08997 * 115.51466 * 9.58528 * 12 11 9 14 14 C 1.53003 * 117.40325 * 224.22988 * 12 11 9 15 15 H 1.09004 * 119.53988 * 4.10233 * 14 12 11 16 16 C 1.54389 * 118.12224 * 160.79282 * 14 12 11 17 17 N 1.48436 * 104.65103 * 87.19230 * 16 14 12 18 18 C 1.36937 * 127.98084 * 140.37524 * 17 16 14 19 19 H 1.08001 * 119.99748 * 195.39843 * 18 17 16 20 20 C 1.38806 * 120.00200 * 15.39304 * 18 17 16 21 21 N 1.31621 * 119.99863 * 9.04868 * 20 18 17 22 22 Si 1.86797 * 120.00229 * 189.04465 * 20 18 17 23 23 H 1.48507 * 109.46933 * 60.00337 * 22 20 18 24 24 H 1.48496 * 109.47330 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47329 * 300.00593 * 22 20 18 26 26 C 1.48147 * 104.18039 * 320.43967 * 17 16 14 27 27 C 1.52999 * 117.44230 * 155.00740 * 12 11 9 28 28 H 1.08998 * 119.53594 * 354.23138 * 27 12 11 29 29 N 1.35897 * 107.57704 * 0.18867 * 8 7 6 30 30 C 1.29793 * 108.84716 * 359.59859 * 29 8 7 31 31 C 1.51110 * 127.17414 * 180.25157 * 30 29 8 32 32 H 1.08991 * 109.47421 * 180.11325 * 1 2 3 33 33 H 1.09006 * 109.46746 * 300.11510 * 1 2 3 34 34 H 1.09003 * 109.46792 * 60.10639 * 1 2 3 35 35 H 1.09001 * 109.46001 * 50.24138 * 4 2 1 36 36 H 1.09003 * 109.46181 * 290.28385 * 4 2 1 37 37 H 1.08999 * 109.59030 * 290.78733 * 5 4 2 38 38 H 1.09011 * 109.58554 * 170.36751 * 5 4 2 39 39 H 1.07995 * 126.61159 * 0.11174 * 7 6 5 40 40 H 0.96996 * 120.00544 * 0.02562 * 11 9 8 41 41 H 1.08998 * 110.40802 * 205.97137 * 16 14 12 42 42 H 1.08997 * 110.40727 * 328.40412 * 16 14 12 43 43 H 0.97002 * 119.99904 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.41087 * 280.73178 * 26 17 16 45 45 H 1.09002 * 110.40734 * 158.41881 * 26 17 16 46 46 H 1.08999 * 109.71487 * 44.63355 * 31 30 29 47 47 H 1.08994 * 109.75257 * 284.00619 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0414 -0.7242 -1.2487 5 6 3.5541 -0.5166 -1.3777 6 7 4.1874 -0.8518 -0.0989 7 6 5.4907 -1.1139 0.1281 8 6 5.6137 -1.3754 1.4630 9 6 6.8595 -1.7152 2.1722 10 8 7.9084 -1.7829 1.5602 11 7 6.8370 -1.9500 3.4990 12 6 8.0761 -2.2874 4.2043 13 1 8.9924 -2.1703 3.6258 14 6 8.0214 -3.4357 5.2139 15 1 7.0995 -4.0057 5.3301 16 6 9.3497 -4.1054 5.6271 17 7 9.8468 -3.2857 6.7604 18 6 10.4548 -3.7168 7.9092 19 1 10.5433 -3.0517 8.7555 20 6 10.9571 -5.0085 7.9860 21 7 11.0114 -5.7588 6.9059 22 14 11.5563 -5.6819 9.6221 23 1 10.4388 -5.6729 10.6002 24 1 12.0414 -7.0731 9.4370 25 1 12.6653 -4.8349 10.1298 26 6 9.5333 -1.8926 6.3657 27 6 8.1424 -1.9768 5.7010 28 1 7.3225 -1.4369 6.1746 29 7 4.3775 -1.2700 2.0174 30 6 3.5275 -0.9522 1.0895 31 6 2.0422 -0.7255 1.2506 32 1 -0.3634 -1.0276 0.0020 33 1 -0.3633 0.5157 0.8890 34 1 -0.3633 0.5122 -0.8910 35 1 1.5431 -0.3226 -2.1310 36 1 1.8268 -1.7895 -1.1641 37 1 3.7603 0.5246 -1.6256 38 1 3.9465 -1.1654 -2.1608 39 1 6.2842 -1.1168 -0.6044 40 1 6.0006 -1.8957 3.9871 41 1 9.1739 -5.1317 5.9491 42 1 10.0603 -4.0818 4.8009 43 1 11.3628 -6.6613 6.9595 44 1 10.2726 -1.5234 5.6549 45 1 9.4965 -1.2479 7.2439 46 1 1.8573 -0.1126 2.1329 47 1 1.5325 -1.6833 1.3549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960548372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:59 Heat of formation + Delta-G solvation = 75.457514 kcal Electronic energy + Delta-G solvation = -27236.972719 eV Core-core repulsion = 23421.965782 eV Total energy + Delta-G solvation = -3815.006937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.67739 -39.49297 -38.18831 -37.46885 -34.42382 -34.15450 -32.48320 -30.82039 -30.17745 -29.77200 -27.17616 -27.03698 -25.65774 -24.50276 -23.34661 -21.68270 -21.38212 -20.28037 -19.75201 -19.53378 -19.15999 -17.74757 -16.80547 -16.54869 -16.23477 -16.03443 -15.31370 -15.06380 -14.64878 -14.49310 -14.22614 -14.12507 -13.95821 -13.74677 -13.48608 -13.08553 -12.90527 -12.77033 -12.64805 -12.20428 -12.08436 -11.65430 -11.46595 -11.43374 -11.39053 -11.35197 -10.92780 -10.75711 -10.45740 -10.30998 -10.14333 -10.05914 -9.98269 -9.84981 -9.64188 -9.06439 -8.71014 -8.63535 -8.12978 -6.79119 -5.72201 -3.06287 1.47502 2.22399 2.27982 3.35248 3.44567 3.48107 3.49617 3.57839 3.72617 3.91575 4.00251 4.04315 4.46222 4.49220 4.54360 4.55796 4.67531 4.73787 4.94441 5.00004 5.01464 5.10279 5.16958 5.20004 5.29821 5.35351 5.46217 5.47429 5.52814 5.53372 5.67411 5.67567 5.83843 5.93383 6.01466 6.23715 6.30399 6.40208 6.63520 6.72488 6.78110 6.98492 6.99722 7.45698 7.55721 7.61711 7.78937 7.89293 8.27878 8.48432 9.17631 9.80793 10.58851 11.42166 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.001946 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.303198 B =14387.358319 C =14743.981355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.131 4.131 5 C 0.101 3.899 6 N -0.455 5.455 7 C 0.036 3.964 8 C -0.058 4.058 9 C 0.605 3.395 10 O -0.545 6.545 11 N -0.683 5.683 12 C 0.097 3.903 13 H 0.132 0.868 14 C -0.179 4.179 15 H 0.102 0.898 16 C 0.185 3.815 17 N -0.594 5.594 18 C -0.226 4.226 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.156 3.844 27 C -0.183 4.183 28 H 0.104 0.896 29 N -0.457 5.457 30 C 0.209 3.791 31 C -0.028 4.028 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.189 0.811 40 H 0.406 0.594 41 H 0.091 0.909 42 H 0.027 0.973 43 H 0.255 0.745 44 H 0.027 0.973 45 H 0.051 0.949 46 H 0.097 0.903 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.847 12.817 -19.526 33.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.169 4.169 5 C -0.021 4.021 6 N -0.138 5.138 7 C -0.103 4.103 8 C -0.187 4.187 9 C 0.392 3.608 10 O -0.422 6.422 11 N -0.330 5.330 12 C -0.009 4.009 13 H 0.149 0.851 14 C -0.200 4.200 15 H 0.120 0.880 16 C 0.059 3.941 17 N -0.317 5.317 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.029 3.971 27 C -0.205 4.205 28 H 0.122 0.878 29 N -0.176 5.176 30 C -0.055 4.055 31 C -0.067 4.067 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.206 0.794 40 H 0.241 0.759 41 H 0.109 0.891 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.116 0.884 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.149 12.446 -19.113 32.497 hybrid contribution 0.035 -0.245 0.166 0.298 sum -23.113 12.201 -18.947 32.281 Atomic orbital electron populations 1.21801 0.93535 1.02502 1.02474 1.21278 0.96891 0.99891 0.93637 0.90263 1.21996 0.92841 1.02522 0.99549 1.22097 0.94062 1.02529 0.83384 1.45321 1.07368 1.51472 1.09600 1.22436 0.86073 1.03567 0.98218 1.20640 0.92664 1.13581 0.91855 1.16811 0.86074 0.76312 0.81638 1.90798 1.31127 1.53229 1.67080 1.45142 1.10908 1.69206 1.07736 1.21837 0.88203 1.02016 0.88824 0.85087 1.24721 1.02731 0.91083 1.01485 0.88016 1.21099 0.87282 0.96530 0.89142 1.45233 1.68170 0.99318 1.18996 1.18940 1.29982 0.97257 0.89219 0.90596 1.24900 1.00154 0.97900 0.97423 1.69896 1.50461 1.09520 1.26245 0.86184 0.78521 0.78001 0.82948 1.21131 1.21587 1.21018 1.21115 0.90729 0.89025 0.96200 1.24280 1.01356 1.00657 0.94163 0.87830 1.70379 0.99242 1.17532 1.30491 1.23481 0.96565 1.04902 0.80550 1.20316 0.84870 1.02326 0.99215 0.92131 0.91891 0.92134 0.89006 0.90362 0.89334 0.88710 0.79388 0.75887 0.89123 0.95519 0.93523 0.95533 0.93036 0.88441 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.17 37.16 0.34 -0.03 16 2 C -0.10 -0.36 2.74 -90.35 -0.25 -0.61 16 3 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 4 C -0.13 -0.39 5.23 -26.54 -0.14 -0.53 16 5 C 0.10 0.43 6.96 -3.88 -0.03 0.41 16 6 N -0.46 -3.99 3.11 -113.42 -0.35 -4.34 16 7 C 0.04 0.41 11.32 -16.82 -0.19 0.22 16 8 C -0.06 -0.84 6.98 -82.97 -0.58 -1.42 16 9 C 0.61 10.45 7.81 -12.57 -0.10 10.35 16 10 O -0.54 -10.90 16.45 5.25 0.09 -10.81 16 11 N -0.68 -11.42 5.56 -54.91 -0.31 -11.72 16 12 C 0.10 1.83 5.98 -67.92 -0.41 1.43 16 13 H 0.13 2.72 7.40 -51.93 -0.38 2.33 16 14 C -0.18 -3.70 7.06 -89.22 -0.63 -4.33 16 15 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 16 C 0.19 4.71 5.72 -2.25 -0.01 4.70 16 17 N -0.59 -15.85 3.39 -168.62 -0.57 -16.42 16 18 C -0.23 -6.47 10.36 -15.06 -0.16 -6.62 16 19 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 20 C -0.01 -0.19 5.40 -17.43 -0.09 -0.29 16 21 N -0.92 -27.56 10.87 55.49 0.60 -26.96 16 22 Si 0.91 22.43 29.56 -169.99 -5.03 17.40 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.16 3.46 7.03 -2.41 -0.02 3.44 16 27 C -0.18 -3.53 7.06 -89.22 -0.63 -4.16 16 28 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 29 N -0.46 -6.15 11.00 -7.00 -0.08 -6.23 16 30 C 0.21 2.11 7.64 -154.63 -1.18 0.93 16 31 C -0.03 -0.17 5.64 -27.48 -0.15 -0.33 16 32 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.09 0.10 8.12 -51.93 -0.42 -0.32 16 36 H 0.08 0.28 8.11 -51.93 -0.42 -0.14 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.29 8.14 -51.92 -0.42 -0.14 16 39 H 0.19 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.41 6.16 8.54 -40.82 -0.35 5.82 16 41 H 0.09 2.54 6.51 -51.93 -0.34 2.20 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.51 8.11 -51.93 -0.42 0.09 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -35.29 382.04 -11.48 -46.77 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.38 Total: 3.39 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -4.22 Total: 3.15 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.70 Total: -65.66 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.29 -11.48 -46.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960548372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.231 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds