Wall clock time and date at job start Tue Mar 31 2020 17:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.54503 * 2 1 4 4 C 1.53137 * 109.50697 * 239.88846 * 2 1 3 5 5 C 1.53230 * 109.52536 * 170.26126 * 4 2 1 6 6 N 1.46583 * 108.78833 * 50.58056 * 5 4 2 7 7 C 1.34866 * 127.50286 * 162.79258 * 6 5 4 8 8 C 1.36576 * 106.78526 * 180.13442 * 7 6 5 9 9 C 1.47324 * 126.21475 * 179.97438 * 8 7 6 10 10 O 1.21629 * 119.99300 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00136 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99760 * 180.02562 * 11 9 8 13 13 H 1.08997 * 115.51466 * 9.58528 * 12 11 9 14 14 C 1.53003 * 117.40325 * 224.22988 * 12 11 9 15 15 H 1.09004 * 119.53988 * 4.10233 * 14 12 11 16 16 C 1.54389 * 118.12224 * 160.79282 * 14 12 11 17 17 N 1.48436 * 104.65103 * 87.19230 * 16 14 12 18 18 C 1.36937 * 127.98084 * 140.37524 * 17 16 14 19 19 H 1.08001 * 119.99748 * 195.39843 * 18 17 16 20 20 C 1.38806 * 120.00200 * 15.39304 * 18 17 16 21 21 N 1.31621 * 119.99863 * 9.04868 * 20 18 17 22 22 Si 1.86797 * 120.00229 * 189.04465 * 20 18 17 23 23 H 1.48507 * 109.46933 * 60.00337 * 22 20 18 24 24 H 1.48496 * 109.47330 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47329 * 300.00593 * 22 20 18 26 26 C 1.48147 * 104.18039 * 320.43967 * 17 16 14 27 27 C 1.52999 * 117.44230 * 155.00740 * 12 11 9 28 28 H 1.08998 * 119.53594 * 354.23138 * 27 12 11 29 29 N 1.35897 * 107.57704 * 0.18867 * 8 7 6 30 30 C 1.29793 * 108.84716 * 359.59859 * 29 8 7 31 31 C 1.51110 * 127.17414 * 180.25157 * 30 29 8 32 32 H 1.08991 * 109.47421 * 180.11325 * 1 2 3 33 33 H 1.09006 * 109.46746 * 300.11510 * 1 2 3 34 34 H 1.09003 * 109.46792 * 60.10639 * 1 2 3 35 35 H 1.09001 * 109.46001 * 50.24138 * 4 2 1 36 36 H 1.09003 * 109.46181 * 290.28385 * 4 2 1 37 37 H 1.08999 * 109.59030 * 290.78733 * 5 4 2 38 38 H 1.09011 * 109.58554 * 170.36751 * 5 4 2 39 39 H 1.07995 * 126.61159 * 0.11174 * 7 6 5 40 40 H 0.96996 * 120.00544 * 0.02562 * 11 9 8 41 41 H 1.08998 * 110.40802 * 205.97137 * 16 14 12 42 42 H 1.08997 * 110.40727 * 328.40412 * 16 14 12 43 43 H 0.97002 * 119.99904 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.41087 * 280.73178 * 26 17 16 45 45 H 1.09002 * 110.40734 * 158.41881 * 26 17 16 46 46 H 1.08999 * 109.71487 * 44.63355 * 31 30 29 47 47 H 1.08994 * 109.75257 * 284.00619 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0414 -0.7242 -1.2487 5 6 3.5541 -0.5166 -1.3777 6 7 4.1874 -0.8518 -0.0989 7 6 5.4907 -1.1139 0.1281 8 6 5.6137 -1.3754 1.4630 9 6 6.8595 -1.7152 2.1722 10 8 7.9084 -1.7829 1.5602 11 7 6.8370 -1.9500 3.4990 12 6 8.0761 -2.2874 4.2043 13 1 8.9924 -2.1703 3.6258 14 6 8.0214 -3.4357 5.2139 15 1 7.0995 -4.0057 5.3301 16 6 9.3497 -4.1054 5.6271 17 7 9.8468 -3.2857 6.7604 18 6 10.4548 -3.7168 7.9092 19 1 10.5433 -3.0517 8.7555 20 6 10.9571 -5.0085 7.9860 21 7 11.0114 -5.7588 6.9059 22 14 11.5563 -5.6819 9.6221 23 1 10.4388 -5.6729 10.6002 24 1 12.0414 -7.0731 9.4370 25 1 12.6653 -4.8349 10.1298 26 6 9.5333 -1.8926 6.3657 27 6 8.1424 -1.9768 5.7010 28 1 7.3225 -1.4369 6.1746 29 7 4.3775 -1.2700 2.0174 30 6 3.5275 -0.9522 1.0895 31 6 2.0422 -0.7255 1.2506 32 1 -0.3634 -1.0276 0.0020 33 1 -0.3633 0.5157 0.8890 34 1 -0.3633 0.5122 -0.8910 35 1 1.5431 -0.3226 -2.1310 36 1 1.8268 -1.7895 -1.1641 37 1 3.7603 0.5246 -1.6256 38 1 3.9465 -1.1654 -2.1608 39 1 6.2842 -1.1168 -0.6044 40 1 6.0006 -1.8957 3.9871 41 1 9.1739 -5.1317 5.9491 42 1 10.0603 -4.0818 4.8009 43 1 11.3628 -6.6613 6.9595 44 1 10.2726 -1.5234 5.6549 45 1 9.4965 -1.2479 7.2439 46 1 1.8573 -0.1126 2.1329 47 1 1.5325 -1.6833 1.3549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960548372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:58 Heat of formation + Delta-G solvation = 53.098451 kcal Electronic energy + Delta-G solvation = -27237.942281 eV Core-core repulsion = 23421.965782 eV Total energy + Delta-G solvation = -3815.976499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.46334 -41.00005 -39.67726 -38.02345 -36.07658 -34.93462 -34.23456 -32.21319 -31.31256 -30.38581 -28.94009 -27.98969 -27.41293 -25.18176 -24.34754 -23.06338 -22.18464 -21.91090 -21.07030 -20.85990 -20.06334 -18.88438 -18.65447 -17.65423 -17.28101 -16.99096 -16.73505 -15.97995 -15.74816 -15.54797 -15.40892 -15.15830 -14.90214 -14.86247 -14.63571 -14.55501 -14.18105 -13.78277 -13.35953 -13.25551 -13.19084 -13.10081 -12.90812 -12.67208 -12.55358 -12.17389 -12.07134 -11.96387 -11.87757 -11.78592 -11.67403 -11.66406 -11.38844 -11.14775 -10.82631 -10.72347 -10.71557 -9.81940 -9.44940 -8.93090 -7.90785 -5.28275 0.49495 1.31211 1.46761 1.50894 1.57577 1.59197 2.06507 2.36125 2.49563 2.87766 3.06747 3.29290 3.51519 3.59128 3.59573 3.71012 3.83571 3.88101 3.90594 4.03739 4.13096 4.28863 4.33795 4.36387 4.38783 4.43526 4.49525 4.72282 4.77563 4.80206 4.87499 4.88010 4.91515 4.98023 5.00464 5.06182 5.14573 5.26268 5.35078 5.40179 5.41575 5.44303 5.48190 5.52237 5.62686 6.03556 6.15572 6.43917 6.83139 6.98998 7.17144 7.66676 8.46053 9.23254 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.001946 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.303198 B =14387.358319 C =14743.981355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.079 0.921 4 C -0.127 4.127 5 C 0.091 3.909 6 N -0.447 5.447 7 C 0.049 3.951 8 C -0.098 4.098 9 C 0.604 3.396 10 O -0.582 6.582 11 N -0.675 5.675 12 C 0.116 3.884 13 H 0.111 0.889 14 C -0.185 4.185 15 H 0.116 0.884 16 C 0.192 3.808 17 N -0.617 5.617 18 C -0.242 4.242 19 H 0.085 0.915 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.985 3.015 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.150 3.850 27 C -0.160 4.160 28 H 0.136 0.864 29 N -0.489 5.489 30 C 0.212 3.788 31 C -0.029 4.029 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.204 0.796 40 H 0.416 0.584 41 H 0.058 0.942 42 H -0.002 1.002 43 H 0.250 0.750 44 H 0.022 0.978 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.624 14.487 -20.378 36.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.165 4.165 5 C -0.029 4.029 6 N -0.128 5.128 7 C -0.093 4.093 8 C -0.226 4.226 9 C 0.392 3.608 10 O -0.462 6.462 11 N -0.322 5.322 12 C 0.009 3.991 13 H 0.129 0.871 14 C -0.206 4.206 15 H 0.134 0.866 16 C 0.066 3.934 17 N -0.341 5.341 18 C -0.370 4.370 19 H 0.103 0.897 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.813 3.187 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.199 1.199 26 C 0.024 3.976 27 C -0.180 4.180 28 H 0.154 0.846 29 N -0.209 5.209 30 C -0.053 4.053 31 C -0.068 4.068 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.221 0.779 40 H 0.253 0.747 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.984 14.163 -19.977 35.705 hybrid contribution 0.844 -0.693 0.307 1.134 sum -25.139 13.471 -19.670 34.646 Atomic orbital electron populations 1.21774 0.92433 1.02762 1.03003 1.21253 0.97653 0.99519 0.92677 0.90247 1.22032 0.91831 1.02375 1.00227 1.22553 0.94767 1.03997 0.81563 1.45622 1.06380 1.49862 1.10906 1.22666 0.87544 1.01699 0.97361 1.20340 0.92147 1.17089 0.93040 1.17254 0.86789 0.75289 0.81444 1.90766 1.32753 1.54954 1.67707 1.44997 1.10311 1.69114 1.07820 1.21431 0.88657 1.00369 0.88613 0.87150 1.24409 1.00682 0.91774 1.03737 0.86559 1.20798 0.89018 0.95505 0.88114 1.45531 1.68440 1.01349 1.18764 1.19385 1.29730 0.97704 0.90191 0.89706 1.25825 1.00825 0.98264 1.01021 1.70111 1.51644 1.09500 1.28459 0.85060 0.78255 0.76819 0.78610 1.20083 1.22046 1.19935 1.21262 0.92119 0.87163 0.97016 1.24206 1.00490 0.99166 0.94181 0.84640 1.70294 0.99267 1.19196 1.32138 1.24188 0.97723 1.02968 0.80440 1.20535 0.82376 1.03122 1.00789 0.92001 0.92059 0.90974 0.86284 0.90767 0.87564 0.87023 0.77889 0.74724 0.92331 0.98422 0.94095 0.95989 0.91397 0.88316 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.29 9.17 71.98 0.66 0.37 16 2 C -0.09 -0.41 2.74 -10.62 -0.03 -0.44 16 3 H 0.08 0.39 8.12 -2.39 -0.02 0.37 16 4 C -0.13 -0.30 5.23 30.72 0.16 -0.14 16 5 C 0.09 0.48 6.96 86.44 0.60 1.08 16 6 N -0.45 -6.90 3.11 -512.75 -1.60 -8.50 16 7 C 0.05 1.06 11.32 83.84 0.95 2.01 16 8 C -0.10 -2.83 6.98 40.52 0.28 -2.54 16 9 C 0.60 21.15 7.81 86.63 0.68 21.82 16 10 O -0.58 -23.94 16.45 -4.12 -0.07 -24.00 16 11 N -0.67 -22.53 5.56 -445.88 -2.48 -25.01 16 12 C 0.12 4.43 5.98 44.99 0.27 4.70 16 13 H 0.11 4.76 7.40 -2.39 -0.02 4.74 16 14 C -0.18 -7.74 7.06 -9.89 -0.07 -7.81 16 15 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 16 C 0.19 10.19 5.72 86.48 0.49 10.69 16 17 N -0.62 -33.63 3.39 -687.40 -2.33 -35.97 16 18 C -0.24 -14.01 10.36 84.03 0.87 -13.14 16 19 H 0.09 4.64 7.84 -2.91 -0.02 4.62 16 20 C -0.07 -3.86 5.40 84.86 0.46 -3.41 16 21 N -0.95 -59.31 10.87 21.65 0.24 -59.07 16 22 Si 0.99 46.70 29.56 68.60 2.03 48.73 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 C 0.15 6.64 7.03 86.53 0.61 7.24 16 27 C -0.16 -6.00 7.06 -9.89 -0.07 -6.07 16 28 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 29 N -0.49 -12.86 11.00 -176.07 -1.94 -14.79 16 30 C 0.21 3.96 7.64 138.06 1.05 5.01 16 31 C -0.03 -0.30 5.64 30.11 0.17 -0.13 16 32 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 34 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.12 -0.29 8.12 -2.39 -0.02 -0.30 16 36 H 0.07 0.29 8.11 -2.39 -0.02 0.27 16 37 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 39 H 0.20 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.42 12.34 8.54 -92.71 -0.79 11.54 16 41 H 0.06 3.46 6.51 -2.39 -0.02 3.45 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.10 0.90 8.11 -2.39 -0.02 0.88 16 Total: -1.00 -79.72 382.04 1.13 -78.59 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.19 Total: 20.77 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 7.09 Total: 19.25 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -8.11 Total: -143.34 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.07 Total: -24.00 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -79.72 1.13 -78.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960548372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.689 kcal (2) G-P(sol) polarization free energy of solvation -79.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds