Wall clock time and date at job start Tue Mar 31 2020 16:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39905 * 109.47031 * 2 1 4 4 F 1.39897 * 109.47335 * 240.00193 * 2 1 3 5 5 C 1.50695 * 109.47060 * 120.00231 * 2 1 3 6 6 O 1.21279 * 120.00184 * 18.79836 * 5 2 1 7 7 N 1.34780 * 120.00080 * 198.80328 * 5 2 1 8 8 C 1.46919 * 120.63088 * 174.94740 * 7 5 2 9 9 C 1.53196 * 108.77389 * 126.41657 * 8 7 5 10 10 C 1.53036 * 109.31504 * 54.63617 * 9 8 7 11 11 C 1.52999 * 109.46182 * 178.61945 * 10 9 8 12 12 H 1.08995 * 109.49808 * 60.05685 * 11 10 9 13 13 C 1.53043 * 109.49719 * 180.15920 * 11 10 9 14 14 C 1.53040 * 109.53433 * 181.31126 * 13 11 10 15 15 C 1.53193 * 109.31674 * 298.63504 * 14 13 11 16 16 N 1.46931 * 108.77493 * 54.63590 * 15 14 13 17 17 C 1.36934 * 120.62844 * 126.37171 * 16 15 14 18 18 H 1.08001 * 119.99277 * 207.59928 * 17 16 15 19 19 C 1.38810 * 120.00458 * 27.59978 * 17 16 15 20 20 N 1.31622 * 119.99748 * 15.33730 * 19 17 16 21 21 Si 1.86794 * 120.00169 * 195.33541 * 19 17 16 22 22 H 1.48496 * 109.46954 * 94.54682 * 21 19 17 23 23 H 1.48508 * 109.47061 * 214.54356 * 21 19 17 24 24 H 1.48496 * 109.47314 * 334.54449 * 21 19 17 25 25 C 1.46927 * 118.73665 * 306.39036 * 16 15 14 26 26 C 1.53047 * 109.53490 * 298.63613 * 10 9 8 27 27 C 1.46930 * 120.63003 * 354.97295 * 7 5 2 28 28 H 1.08992 * 109.47020 * 299.99877 * 1 2 3 29 29 H 1.09008 * 109.46734 * 59.99943 * 1 2 3 30 30 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.59190 * 6.62854 * 8 7 5 32 32 H 1.09007 * 109.58709 * 246.19952 * 8 7 5 33 33 H 1.08996 * 109.49398 * 294.68294 * 9 8 7 34 34 H 1.09001 * 109.49527 * 174.58704 * 9 8 7 35 35 H 1.09001 * 109.46227 * 58.65524 * 10 9 8 36 36 H 1.08991 * 109.46128 * 301.33384 * 13 11 10 37 37 H 1.09003 * 109.46046 * 61.29467 * 13 11 10 38 38 H 1.09005 * 109.49175 * 178.68521 * 14 13 11 39 39 H 1.08994 * 109.49767 * 58.58923 * 14 13 11 40 40 H 1.09000 * 109.58194 * 294.85000 * 15 14 13 41 41 H 1.09000 * 109.70526 * 174.49652 * 15 14 13 42 42 H 0.97001 * 120.00416 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.59016 * 293.82437 * 25 16 15 44 44 H 1.08999 * 109.70136 * 173.46112 * 25 16 15 45 45 H 1.08994 * 109.49641 * 181.31702 * 26 10 9 46 46 H 1.08998 * 109.49541 * 301.41122 * 26 10 9 47 47 H 1.08999 * 109.58981 * 113.79752 * 27 7 5 48 48 H 1.09007 * 109.70118 * 353.44204 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2971 -1.4551 1.8433 7 7 3.2987 -0.5182 1.6498 8 6 3.7698 -1.1153 2.9068 9 6 5.0417 -1.9209 2.6237 10 6 6.0679 -1.0203 1.9325 11 6 7.3523 -1.8120 1.6791 12 1 7.1324 -2.6674 1.0404 13 6 8.3806 -0.9109 0.9914 14 6 9.6540 -1.7111 0.7081 15 6 10.2494 -2.2014 2.0317 16 7 9.2186 -2.9478 2.7662 17 6 9.4621 -4.2197 3.2110 18 1 8.6443 -4.9142 3.3349 19 6 10.7599 -4.6165 3.5028 20 7 11.7073 -3.7142 3.6468 21 14 11.1618 -6.4310 3.6911 22 1 11.6569 -6.9651 2.3970 23 1 12.2094 -6.6008 4.7299 24 1 9.9388 -7.1695 4.0960 25 6 7.9216 -2.3034 3.0138 26 6 5.5009 -0.5282 0.5988 27 6 4.2342 0.2931 0.8589 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.0010 -1.7755 3.3085 32 1 3.9894 -0.3265 3.6264 33 1 4.8019 -2.7635 1.9753 34 1 5.4552 -2.2897 3.5624 35 1 6.2888 -0.1648 2.5708 36 1 7.9684 -0.5401 0.0530 37 1 8.6180 -0.0688 1.6415 38 1 10.3771 -1.0752 0.1973 39 1 9.4130 -2.5674 0.0782 40 1 10.5742 -1.3467 2.6250 41 1 11.1004 -2.8529 1.8330 42 1 12.6141 -3.9914 3.8510 43 1 8.0566 -1.4571 3.6873 44 1 7.2344 -3.0211 3.4620 45 1 6.2412 0.0941 0.0962 46 1 5.2567 -1.3840 -0.0306 47 1 4.4917 1.1967 1.4114 48 1 3.7732 0.5644 -0.0909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961314957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:03 Heat of formation + Delta-G solvation = -122.092390 kcal Electronic energy + Delta-G solvation = -30010.381766 eV Core-core repulsion = 25736.119236 eV Total energy + Delta-G solvation = -4274.262530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.68934 -47.58780 -40.45521 -38.71989 -36.91479 -34.17695 -32.45261 -31.96720 -31.35361 -30.33423 -29.31022 -26.06276 -25.37702 -24.32328 -23.37739 -21.81441 -21.57979 -20.58400 -19.72001 -19.03948 -18.30320 -18.14950 -17.22203 -16.67868 -16.14250 -15.40597 -15.07702 -14.88912 -14.60457 -14.30235 -14.13784 -14.01045 -13.91210 -13.87720 -13.53794 -13.36230 -13.17757 -13.04982 -12.89932 -12.85167 -12.52690 -12.43608 -12.25432 -12.07050 -11.80553 -11.34651 -11.23067 -10.95525 -10.87148 -10.69832 -10.47553 -10.26914 -10.13022 -10.11663 -10.08766 -9.83498 -9.44975 -9.27020 -8.97285 -8.44675 -6.64072 -5.76263 -3.19610 1.80697 2.24880 3.23579 3.38202 3.45256 3.46470 3.48465 3.93562 4.14066 4.49178 4.59024 4.76665 4.77461 4.93534 4.99174 5.12060 5.14332 5.23783 5.34578 5.39799 5.43515 5.53936 5.55648 5.59520 5.65964 5.71228 5.80937 5.90411 5.97049 6.04261 6.14737 6.23686 6.29335 6.41709 6.46606 6.49295 6.66795 6.73559 6.83941 6.88751 6.93214 7.05039 7.44249 7.44642 7.72316 7.81082 8.47709 9.23951 9.87613 10.43823 11.31544 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.002701 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.416871 B =10365.347564 C =10927.463658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.281 3.719 3 F -0.186 7.186 4 F -0.182 7.182 5 C 0.485 3.515 6 O -0.510 6.510 7 N -0.587 5.587 8 C 0.108 3.892 9 C -0.131 4.131 10 C -0.080 4.080 11 C -0.097 4.097 12 H 0.065 0.935 13 C -0.103 4.103 14 C -0.143 4.143 15 C 0.168 3.832 16 N -0.593 5.593 17 C -0.249 4.249 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.905 5.905 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.153 3.847 26 C -0.131 4.131 27 C 0.094 3.906 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.089 0.911 42 H 0.253 0.747 43 H 0.015 0.985 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.066 11.468 -7.710 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.167 7.167 4 F -0.163 7.163 5 C 0.267 3.733 6 O -0.385 6.385 7 N -0.320 5.320 8 C -0.013 4.013 9 C -0.168 4.168 10 C -0.099 4.099 11 C -0.117 4.117 12 H 0.084 0.916 13 C -0.141 4.141 14 C -0.182 4.182 15 C 0.043 3.957 16 N -0.315 5.315 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.550 5.550 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.027 3.973 26 C -0.169 4.169 27 C -0.029 4.029 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.235 11.035 -7.322 23.353 hybrid contribution 0.565 -0.749 -0.120 0.946 sum -18.670 10.286 -7.442 22.578 Atomic orbital electron populations 1.22611 0.88755 1.06783 1.05635 1.21385 0.95832 0.75681 0.83012 1.93028 1.90017 1.36973 1.96658 1.93097 1.90447 1.80740 1.51991 1.20728 0.83063 0.83283 0.86198 1.90764 1.55665 1.36106 1.55967 1.48226 1.09967 1.49919 1.23841 1.21855 0.97513 0.97836 0.84065 1.22033 0.93955 0.98394 1.02465 1.21169 0.94955 0.98285 0.95503 1.21681 0.92612 0.97462 0.99984 0.91620 1.21482 0.96047 0.97833 0.98729 1.22186 0.96406 0.98703 1.00937 1.20820 0.92287 0.94967 0.87666 1.44048 1.10530 1.14105 1.62807 1.19215 0.92884 0.87443 1.38320 0.91746 1.25035 0.97272 0.97591 0.99908 1.70018 1.01582 1.31455 1.51921 0.86264 0.77869 0.85201 0.77401 1.21536 1.21785 1.20415 1.20939 0.88544 0.95411 0.92414 1.22058 0.95792 1.00363 0.98669 1.22210 0.90539 0.93883 0.96224 0.88765 0.89163 0.88098 0.88819 0.90718 0.91377 0.89461 0.91079 0.93616 0.92948 0.93541 0.92958 0.96704 0.89317 0.93700 0.96731 0.92936 0.89833 0.91397 0.90410 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 8.84 37.16 0.33 -0.95 16 2 C 0.28 2.71 1.77 -27.88 -0.05 2.66 16 3 F -0.19 -1.74 14.37 2.25 0.03 -1.70 16 4 F -0.18 -1.94 16.57 2.25 0.04 -1.91 16 5 C 0.48 5.72 7.15 -10.99 -0.08 5.64 16 6 O -0.51 -7.16 15.44 5.56 0.09 -7.07 16 7 N -0.59 -6.54 2.97 -172.77 -0.51 -7.05 16 8 C 0.11 1.19 6.44 -3.71 -0.02 1.17 16 9 C -0.13 -1.59 5.05 -26.61 -0.13 -1.72 16 10 C -0.08 -1.00 1.74 -90.58 -0.16 -1.16 16 11 C -0.10 -1.57 1.92 -90.49 -0.17 -1.74 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.10 -1.66 4.86 -26.69 -0.13 -1.79 16 14 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 15 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 16 N -0.59 -14.72 3.00 -172.31 -0.52 -15.24 16 17 C -0.25 -6.82 9.60 -15.06 -0.14 -6.96 16 18 H 0.06 1.74 7.87 -52.49 -0.41 1.33 16 19 C 0.00 0.00 4.97 -17.43 -0.09 -0.08 16 20 N -0.90 -26.31 11.05 55.49 0.61 -25.69 16 21 Si 0.90 21.80 29.58 -169.99 -5.03 16.77 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.15 3.08 5.27 -3.71 -0.02 3.06 16 26 C -0.13 -1.42 5.05 -26.61 -0.13 -1.55 16 27 C 0.09 0.92 5.63 -3.71 -0.02 0.89 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.10 0.73 7.91 -51.93 -0.41 0.32 16 31 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.10 6.49 -51.93 -0.34 0.76 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.63 6.33 -51.93 -0.33 0.30 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.04 6.51 -51.93 -0.34 0.70 16 45 H 0.08 0.85 6.33 -51.93 -0.33 0.52 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.85 4.86 -51.92 -0.25 0.59 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -30.58 367.40 -8.47 -39.05 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.71 Total: -1.28 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.01 Total: -1.42 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.42 Total: -47.98 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.07 Total: -3.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.58 -8.47 -39.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961314957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.038 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds