Wall clock time and date at job start Tue Mar 31 2020 16:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39905 * 109.47031 * 2 1 4 4 F 1.39897 * 109.47335 * 240.00193 * 2 1 3 5 5 C 1.50695 * 109.47060 * 120.00231 * 2 1 3 6 6 O 1.21279 * 120.00184 * 18.79836 * 5 2 1 7 7 N 1.34780 * 120.00080 * 198.80328 * 5 2 1 8 8 C 1.46919 * 120.63088 * 174.94740 * 7 5 2 9 9 C 1.53196 * 108.77389 * 126.41657 * 8 7 5 10 10 C 1.53036 * 109.31504 * 54.63617 * 9 8 7 11 11 C 1.52999 * 109.46182 * 178.61945 * 10 9 8 12 12 H 1.08995 * 109.49808 * 60.05685 * 11 10 9 13 13 C 1.53043 * 109.49719 * 180.15920 * 11 10 9 14 14 C 1.53040 * 109.53433 * 181.31126 * 13 11 10 15 15 C 1.53193 * 109.31674 * 298.63504 * 14 13 11 16 16 N 1.46931 * 108.77493 * 54.63590 * 15 14 13 17 17 C 1.36934 * 120.62844 * 126.37171 * 16 15 14 18 18 H 1.08001 * 119.99277 * 207.59928 * 17 16 15 19 19 C 1.38810 * 120.00458 * 27.59978 * 17 16 15 20 20 N 1.31622 * 119.99748 * 15.33730 * 19 17 16 21 21 Si 1.86794 * 120.00169 * 195.33541 * 19 17 16 22 22 H 1.48496 * 109.46954 * 94.54682 * 21 19 17 23 23 H 1.48508 * 109.47061 * 214.54356 * 21 19 17 24 24 H 1.48496 * 109.47314 * 334.54449 * 21 19 17 25 25 C 1.46927 * 118.73665 * 306.39036 * 16 15 14 26 26 C 1.53047 * 109.53490 * 298.63613 * 10 9 8 27 27 C 1.46930 * 120.63003 * 354.97295 * 7 5 2 28 28 H 1.08992 * 109.47020 * 299.99877 * 1 2 3 29 29 H 1.09008 * 109.46734 * 59.99943 * 1 2 3 30 30 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.59190 * 6.62854 * 8 7 5 32 32 H 1.09007 * 109.58709 * 246.19952 * 8 7 5 33 33 H 1.08996 * 109.49398 * 294.68294 * 9 8 7 34 34 H 1.09001 * 109.49527 * 174.58704 * 9 8 7 35 35 H 1.09001 * 109.46227 * 58.65524 * 10 9 8 36 36 H 1.08991 * 109.46128 * 301.33384 * 13 11 10 37 37 H 1.09003 * 109.46046 * 61.29467 * 13 11 10 38 38 H 1.09005 * 109.49175 * 178.68521 * 14 13 11 39 39 H 1.08994 * 109.49767 * 58.58923 * 14 13 11 40 40 H 1.09000 * 109.58194 * 294.85000 * 15 14 13 41 41 H 1.09000 * 109.70526 * 174.49652 * 15 14 13 42 42 H 0.97001 * 120.00416 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.59016 * 293.82437 * 25 16 15 44 44 H 1.08999 * 109.70136 * 173.46112 * 25 16 15 45 45 H 1.08994 * 109.49641 * 181.31702 * 26 10 9 46 46 H 1.08998 * 109.49541 * 301.41122 * 26 10 9 47 47 H 1.08999 * 109.58981 * 113.79752 * 27 7 5 48 48 H 1.09007 * 109.70118 * 353.44204 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2971 -1.4551 1.8433 7 7 3.2987 -0.5182 1.6498 8 6 3.7698 -1.1153 2.9068 9 6 5.0417 -1.9209 2.6237 10 6 6.0679 -1.0203 1.9325 11 6 7.3523 -1.8120 1.6791 12 1 7.1324 -2.6674 1.0404 13 6 8.3806 -0.9109 0.9914 14 6 9.6540 -1.7111 0.7081 15 6 10.2494 -2.2014 2.0317 16 7 9.2186 -2.9478 2.7662 17 6 9.4621 -4.2197 3.2110 18 1 8.6443 -4.9142 3.3349 19 6 10.7599 -4.6165 3.5028 20 7 11.7073 -3.7142 3.6468 21 14 11.1618 -6.4310 3.6911 22 1 11.6569 -6.9651 2.3970 23 1 12.2094 -6.6008 4.7299 24 1 9.9388 -7.1695 4.0960 25 6 7.9216 -2.3034 3.0138 26 6 5.5009 -0.5282 0.5988 27 6 4.2342 0.2931 0.8589 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.0010 -1.7755 3.3085 32 1 3.9894 -0.3265 3.6264 33 1 4.8019 -2.7635 1.9753 34 1 5.4552 -2.2897 3.5624 35 1 6.2888 -0.1648 2.5708 36 1 7.9684 -0.5401 0.0530 37 1 8.6180 -0.0688 1.6415 38 1 10.3771 -1.0752 0.1973 39 1 9.4130 -2.5674 0.0782 40 1 10.5742 -1.3467 2.6250 41 1 11.1004 -2.8529 1.8330 42 1 12.6141 -3.9914 3.8510 43 1 8.0566 -1.4571 3.6873 44 1 7.2344 -3.0211 3.4620 45 1 6.2412 0.0941 0.0962 46 1 5.2567 -1.3840 -0.0306 47 1 4.4917 1.1967 1.4114 48 1 3.7732 0.5644 -0.0909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961314957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:01 Heat of formation + Delta-G solvation = -138.506138 kcal Electronic energy + Delta-G solvation = -30011.093519 eV Core-core repulsion = 25736.119236 eV Total energy + Delta-G solvation = -4274.974284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -50.43924 -48.34068 -41.38927 -39.95079 -38.23124 -35.65306 -33.95044 -32.79501 -32.45900 -31.86442 -30.70626 -27.25507 -27.02056 -25.36264 -24.53462 -23.12353 -23.01070 -21.68814 -20.67033 -20.56674 -19.17829 -18.92353 -18.59538 -18.02827 -17.02912 -16.84509 -16.34359 -15.92048 -15.78135 -15.60294 -15.34866 -15.12476 -14.96520 -14.78926 -14.66200 -14.59974 -14.42829 -14.17184 -14.12002 -13.72493 -13.55313 -13.52960 -13.36052 -13.09923 -12.99817 -12.89389 -12.78874 -12.42135 -12.22921 -12.21558 -11.99582 -11.78216 -11.73143 -11.54223 -11.38169 -11.11421 -10.93542 -10.73795 -10.52715 -9.88588 -8.65408 -7.86378 -5.32567 0.92137 1.43275 1.44481 1.45803 1.54871 2.44730 2.49980 2.79229 3.25054 3.27060 3.44073 3.61342 3.70780 3.77102 3.90685 4.04772 4.20207 4.23066 4.31736 4.41750 4.45552 4.50424 4.50673 4.56484 4.60365 4.72277 4.73526 4.86704 4.88084 4.91815 4.94901 4.97415 5.05849 5.12060 5.13153 5.18887 5.30465 5.34199 5.41266 5.48131 5.57653 5.60424 5.70376 5.83146 5.99691 6.40085 6.56687 7.15814 7.88948 8.39013 9.18795 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.002701 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.416871 B =10365.347564 C =10927.463658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.284 3.716 3 F -0.182 7.182 4 F -0.188 7.188 5 C 0.478 3.522 6 O -0.538 6.538 7 N -0.589 5.589 8 C 0.113 3.887 9 C -0.126 4.126 10 C -0.071 4.071 11 C -0.084 4.084 12 H 0.050 0.950 13 C -0.098 4.098 14 C -0.134 4.134 15 C 0.173 3.827 16 N -0.613 5.613 17 C -0.259 4.259 18 H 0.063 0.937 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.151 3.849 26 C -0.125 4.125 27 C 0.095 3.905 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.043 0.957 40 H -0.006 1.006 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.012 0.988 44 H 0.049 0.951 45 H 0.099 0.901 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.697 12.933 -8.879 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.244 3.756 3 F -0.163 7.163 4 F -0.169 7.169 5 C 0.261 3.739 6 O -0.416 6.416 7 N -0.321 5.321 8 C -0.009 4.009 9 C -0.164 4.164 10 C -0.090 4.090 11 C -0.104 4.104 12 H 0.068 0.932 13 C -0.135 4.135 14 C -0.173 4.173 15 C 0.047 3.953 16 N -0.336 5.336 17 C -0.389 4.389 18 H 0.081 0.919 19 C -0.248 4.248 20 N -0.583 5.583 21 Si 0.794 3.206 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.194 1.194 25 C 0.026 3.974 26 C -0.163 4.163 27 C -0.026 4.026 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.012 0.988 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.117 0.883 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.887 12.521 -8.509 25.796 hybrid contribution 1.081 -1.198 0.280 1.638 sum -19.806 11.322 -8.230 24.252 Atomic orbital electron populations 1.22668 0.86749 1.07012 1.07130 1.21416 0.97079 0.75400 0.81707 1.93034 1.90123 1.36542 1.96567 1.93087 1.90682 1.80974 1.52178 1.21168 0.83025 0.83019 0.86665 1.90748 1.56439 1.37370 1.57047 1.48365 1.10149 1.49720 1.23850 1.21791 0.96373 0.98134 0.84583 1.21948 0.94615 0.98138 1.01725 1.21070 0.92983 0.97959 0.96944 1.21478 0.94328 0.97539 0.97072 0.93157 1.21466 0.94304 0.97217 1.00510 1.22033 0.98292 0.99154 0.97799 1.20645 0.91605 0.93273 0.89779 1.44335 1.12158 1.13855 1.63247 1.19515 0.92999 0.88837 1.37578 0.91914 1.25769 0.97249 1.01394 1.00385 1.70174 1.01605 1.33158 1.53322 0.85277 0.77639 0.80679 0.77042 1.21386 1.22043 1.19363 1.21097 0.86580 0.94940 0.94792 1.22002 0.96658 1.00384 0.97230 1.22314 0.89586 0.93989 0.96753 0.88030 0.86945 0.88517 0.89779 0.88853 0.92896 0.90243 0.89897 0.90070 0.92431 0.91512 0.93780 0.98813 0.93060 0.94174 0.96973 0.93290 0.88251 0.92444 0.88462 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.84 71.98 0.64 -1.51 16 2 C 0.28 4.87 1.77 29.85 0.05 4.92 16 3 F -0.18 -2.88 14.37 44.97 0.65 -2.23 16 4 F -0.19 -3.65 16.57 44.97 0.75 -2.91 16 5 C 0.48 10.53 7.15 87.65 0.63 11.16 16 6 O -0.54 -14.72 15.44 -3.03 -0.05 -14.77 16 7 N -0.59 -11.88 2.97 -818.91 -2.43 -14.31 16 8 C 0.11 2.29 6.44 86.37 0.56 2.85 16 9 C -0.13 -2.93 5.05 30.67 0.15 -2.78 16 10 C -0.07 -1.60 1.74 -10.77 -0.02 -1.61 16 11 C -0.08 -2.60 1.92 -10.71 -0.02 -2.62 16 12 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 13 C -0.10 -2.88 4.86 30.62 0.15 -2.73 16 14 C -0.13 -4.95 6.08 30.67 0.19 -4.77 16 15 C 0.17 8.43 5.31 86.36 0.46 8.89 16 16 N -0.61 -31.02 3.00 -699.08 -2.10 -33.12 16 17 C -0.26 -14.48 9.60 84.03 0.81 -13.68 16 18 H 0.06 3.45 7.87 -2.91 -0.02 3.43 16 19 C -0.05 -3.01 4.97 84.86 0.42 -2.59 16 20 N -0.94 -56.14 11.05 21.65 0.24 -55.90 16 21 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.15 6.07 5.27 86.36 0.46 6.52 16 26 C -0.12 -2.31 5.05 30.67 0.15 -2.16 16 27 C 0.09 1.55 5.63 86.36 0.49 2.03 16 28 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.10 1.27 7.91 -2.39 -0.02 1.25 16 31 H 0.08 1.91 7.00 -2.39 -0.02 1.89 16 32 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.96 6.49 -2.39 -0.02 1.95 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.89 6.33 -2.39 -0.02 1.87 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.05 2.87 5.95 -2.39 -0.01 2.86 16 42 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.05 1.96 6.51 -2.39 -0.02 1.94 16 45 H 0.10 1.57 6.33 -2.39 -0.02 1.55 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 1.50 4.86 -2.38 -0.01 1.49 16 Total: -1.00 -67.86 367.40 5.14 -62.71 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.95 Total: 10.90 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.11 Total: 1.94 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -4.29 Total: -103.33 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.05 Total: -14.77 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 1.39 Total: -5.14 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -67.86 5.14 -62.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961314957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.792 kcal (2) G-P(sol) polarization free energy of solvation -67.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds