Wall clock time and date at job start Tue Mar 31 2020 16:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46049 * 2 1 4 4 C 1.53109 * 109.46307 * 240.02320 * 2 1 3 5 5 C 1.53410 * 109.63985 * 169.93758 * 4 2 1 6 6 C 1.50716 * 108.33033 * 50.04537 * 5 4 2 7 7 N 1.34311 * 128.90341 * 163.26032 * 6 5 4 8 8 H 0.96996 * 124.98159 * 0.16731 * 7 6 5 9 9 N 1.28847 * 110.03944 * 180.14157 * 7 6 5 10 10 C 1.32203 * 110.14994 * 359.93611 * 9 7 6 11 11 C 1.47716 * 126.68137 * 180.02562 * 10 9 7 12 12 O 1.21567 * 120.00172 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99432 * 359.94844 * 11 10 9 14 14 C 1.46498 * 119.99648 * 180.02562 * 13 11 10 15 15 H 1.09001 * 115.51901 * 9.57913 * 14 13 11 16 16 C 1.53004 * 117.44025 * 224.23784 * 14 13 11 17 17 H 1.09003 * 119.53882 * 4.11754 * 16 14 13 18 18 C 1.54392 * 118.12225 * 160.80949 * 16 14 13 19 19 N 1.48143 * 104.61657 * 87.19103 * 18 16 14 20 20 C 1.36943 * 127.83806 * 140.41788 * 19 18 16 21 21 H 1.08003 * 119.99875 * 195.61381 * 20 19 18 22 22 C 1.38808 * 119.99976 * 15.61305 * 20 19 18 23 23 N 1.31621 * 120.00002 * 9.11069 * 22 20 19 24 24 Si 1.86801 * 119.99870 * 189.11248 * 22 20 19 25 25 H 1.48495 * 109.47161 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47016 * 119.99952 * 24 22 20 27 27 H 1.48499 * 109.46949 * 239.99723 * 24 22 20 28 28 C 1.48151 * 104.32484 * 320.41189 * 19 18 16 29 29 C 1.53000 * 117.44150 * 154.99941 * 14 13 11 30 30 H 1.08999 * 119.54155 * 354.28363 * 29 14 13 31 31 C 1.35574 * 123.87508 * 343.28699 * 6 5 4 32 32 C 1.50382 * 124.62180 * 359.83908 * 31 6 5 33 33 H 1.08998 * 109.46977 * 300.02331 * 1 2 3 34 34 H 1.09005 * 109.47028 * 60.01637 * 1 2 3 35 35 H 1.08994 * 109.47402 * 180.02562 * 1 2 3 36 36 H 1.09004 * 109.44007 * 290.00400 * 4 2 1 37 37 H 1.08997 * 109.44111 * 49.89694 * 4 2 1 38 38 H 1.09004 * 109.72163 * 290.31967 * 5 4 2 39 39 H 1.09003 * 109.67143 * 169.74082 * 5 4 2 40 40 H 0.96996 * 120.00167 * 359.97438 * 13 11 10 41 41 H 1.09003 * 110.40343 * 328.40721 * 18 16 14 42 42 H 1.09000 * 110.50496 * 206.02656 * 18 16 14 43 43 H 0.97001 * 119.99982 * 179.97438 * 23 22 20 44 44 H 1.08997 * 110.40954 * 280.80191 * 28 19 18 45 45 H 1.09000 * 110.40421 * 158.37092 * 28 19 18 46 46 H 1.09007 * 109.70006 * 224.00887 * 32 31 6 47 47 H 1.08996 * 109.73726 * 103.42815 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2505 5 6 3.5533 -0.5087 -1.3871 6 6 4.1998 -0.8415 -0.0670 7 7 5.4917 -1.0945 0.1995 8 1 6.2057 -1.0923 -0.4570 9 7 5.6436 -1.3400 1.4552 10 6 4.4801 -1.2628 2.0783 11 6 4.2350 -1.4766 3.5192 12 8 3.1091 -1.3740 3.9661 13 7 5.2596 -1.7860 4.3384 14 6 5.0164 -1.9986 5.7673 15 1 3.9685 -2.0501 6.0627 16 6 5.9950 -1.3558 6.7524 17 1 6.7911 -0.7129 6.3767 18 6 5.5390 -1.1724 8.2160 19 7 5.8890 -2.4499 8.8794 20 6 6.4018 -2.6308 10.1363 21 1 6.8448 -3.5777 10.4075 22 6 6.3521 -1.5973 11.0615 23 7 5.6579 -0.5106 10.7977 24 14 7.2706 -1.7487 12.6811 25 1 7.9687 -3.0583 12.7337 26 1 8.2658 -0.6519 12.7902 27 1 6.3069 -1.6565 13.8071 28 6 5.5582 -3.4873 7.8748 29 6 6.0076 -2.8821 6.5274 30 1 6.7974 -3.3972 5.9806 31 6 3.5223 -0.9369 1.1035 32 6 2.0414 -0.7231 1.2534 33 1 -0.3633 0.5142 0.8898 34 1 -0.3633 0.5136 -0.8902 35 1 -0.3634 -1.0276 0.0005 36 1 1.8295 -1.7874 -1.1657 37 1 1.5368 -0.3214 -2.1307 38 1 3.7569 0.5309 -1.6441 39 1 3.9471 -1.1636 -2.1644 40 1 6.1578 -1.8686 3.9817 41 1 4.4631 -1.0032 8.2605 42 1 6.0729 -0.3437 8.6812 43 1 5.6229 0.2115 11.4445 44 1 4.4854 -3.6796 7.8661 45 1 6.1082 -4.4054 8.0814 46 1 1.8456 -0.1130 2.1352 47 1 1.5388 -1.6851 1.3533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962179499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:27 Heat of formation + Delta-G solvation = 82.588408 kcal Electronic energy + Delta-G solvation = -27590.839441 eV Core-core repulsion = 23776.141723 eV Total energy + Delta-G solvation = -3814.697718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.07253 -39.55363 -38.12233 -37.84266 -34.40173 -33.08024 -32.46200 -31.82502 -30.36814 -29.63692 -27.10074 -26.76131 -25.78419 -24.22107 -23.72014 -21.78202 -21.26809 -20.39376 -19.80151 -19.31169 -19.21766 -17.99230 -16.97255 -16.77257 -16.20528 -16.04820 -15.08147 -14.72565 -14.66944 -14.30124 -14.25478 -13.92995 -13.66297 -13.47916 -13.24893 -13.14406 -12.74465 -12.69665 -12.37243 -12.15720 -11.97341 -11.52230 -11.41748 -11.27354 -11.03642 -10.95589 -10.86806 -10.82013 -10.71871 -10.35185 -10.12552 -10.12371 -9.91033 -9.69323 -9.53559 -9.12483 -8.85719 -8.70240 -8.24076 -6.82644 -5.75996 -3.10305 1.42917 1.87863 2.54716 3.19588 3.40122 3.40955 3.46282 3.48953 4.13874 4.25444 4.39084 4.41788 4.47186 4.51073 4.71640 4.88144 5.01984 5.08616 5.16877 5.22741 5.26585 5.42355 5.42433 5.46308 5.51059 5.54745 5.60295 5.62650 5.67696 5.84322 5.88898 5.90115 5.95836 6.09994 6.14622 6.19943 6.28660 6.35228 6.57735 6.71424 6.73479 6.89855 6.94444 7.41441 7.50568 7.58806 7.75958 7.78331 8.24553 8.34085 9.14567 9.77313 10.54653 11.38375 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.002140 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.562463 B =13082.212197 C =13622.067526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.047 4.047 6 C 0.007 3.993 7 N -0.375 5.375 8 H 0.444 0.556 9 N -0.263 5.263 10 C 0.000 4.000 11 C 0.604 3.396 12 O -0.526 6.526 13 N -0.684 5.684 14 C 0.096 3.904 15 H 0.133 0.867 16 C -0.178 4.178 17 H 0.102 0.898 18 C 0.185 3.815 19 N -0.594 5.594 20 C -0.226 4.226 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.914 5.914 24 Si 0.913 3.087 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.156 3.844 29 C -0.183 4.183 30 H 0.104 0.896 31 C -0.140 4.140 32 C -0.038 4.038 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.404 0.596 41 H 0.027 0.973 42 H 0.091 0.909 43 H 0.254 0.746 44 H 0.028 0.972 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 0.632 -29.461 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.085 4.085 6 C -0.120 4.120 7 N -0.087 5.087 8 H 0.288 0.712 9 N -0.100 5.100 10 C -0.160 4.160 11 C 0.388 3.612 12 O -0.400 6.400 13 N -0.333 5.333 14 C -0.009 4.009 15 H 0.151 0.849 16 C -0.199 4.199 17 H 0.120 0.880 18 C 0.059 3.941 19 N -0.317 5.317 20 C -0.354 4.354 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.560 5.560 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.029 3.971 29 C -0.204 4.204 30 H 0.122 0.878 31 C -0.150 4.150 32 C -0.076 4.076 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.239 0.761 41 H 0.045 0.955 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.114 0.584 -28.616 28.916 hybrid contribution 0.875 0.089 0.039 0.881 sum -3.239 0.673 -28.577 28.768 Atomic orbital electron populations 1.21813 0.94633 1.02083 1.01885 1.21272 0.95892 0.99734 0.94340 0.90940 1.21640 0.93172 1.01606 0.98359 1.20229 0.95606 1.02097 0.90612 1.21162 0.84955 1.07632 0.98287 1.42947 1.08197 1.50699 1.06870 0.71192 1.73841 1.24788 1.19806 0.91524 1.21644 0.90148 1.09012 0.95168 1.16801 0.84777 0.76784 0.82806 1.90792 1.22246 1.51329 1.75638 1.45219 1.10715 1.69657 1.07677 1.21867 0.98083 1.03591 0.77408 0.84910 1.24735 1.01587 0.95304 0.98300 0.88018 1.21055 0.97587 0.91237 0.84201 1.45193 1.73966 1.00220 1.12310 1.19034 1.30595 0.99574 0.86179 0.90488 1.24911 0.99859 0.97530 0.98075 1.69914 1.42827 1.07598 1.35708 0.86040 0.79039 0.77379 0.83250 1.20382 1.21658 1.21693 1.21128 0.97076 0.92628 0.86277 1.24290 1.01845 0.94997 0.99280 0.87834 1.19893 0.97375 1.07183 0.90575 1.20066 0.88310 1.01256 0.98008 0.92208 0.92714 0.92481 0.91249 0.90842 0.89893 0.90310 0.76144 0.95506 0.89089 0.93588 0.95450 0.92969 0.89548 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.16 37.16 0.34 -0.62 16 2 C -0.09 -0.70 2.70 -90.32 -0.24 -0.94 16 3 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 4 C -0.11 -0.61 5.19 -26.46 -0.14 -0.75 16 5 C -0.05 -0.24 6.31 -27.66 -0.17 -0.42 16 6 C 0.01 0.06 7.12 -82.45 -0.59 -0.53 16 7 N -0.37 -3.14 6.82 33.42 0.23 -2.91 16 8 H 0.44 1.96 8.96 -190.22 -1.71 0.26 16 9 N -0.26 -3.13 11.96 33.28 0.40 -2.73 16 10 C 0.00 0.00 7.12 -82.98 -0.59 -0.59 16 11 C 0.60 9.88 7.82 -12.39 -0.10 9.78 16 12 O -0.53 -9.99 15.37 5.31 0.08 -9.91 16 13 N -0.68 -10.67 5.56 -54.79 -0.30 -10.97 16 14 C 0.10 1.73 5.98 -67.93 -0.41 1.32 16 15 H 0.13 2.63 7.40 -51.93 -0.38 2.25 16 16 C -0.18 -3.55 7.06 -89.21 -0.63 -4.18 16 17 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 18 C 0.19 4.60 5.70 -2.41 -0.01 4.59 16 19 N -0.59 -15.54 3.38 -168.85 -0.57 -16.11 16 20 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 21 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 22 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 23 N -0.91 -27.22 10.86 55.49 0.60 -26.62 16 24 Si 0.91 22.19 29.56 -169.99 -5.03 17.16 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.16 3.36 7.04 -2.40 -0.02 3.34 16 29 C -0.18 -3.38 7.06 -89.22 -0.63 -4.01 16 30 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 31 C -0.14 -1.65 5.99 -104.88 -0.63 -2.28 16 32 C -0.04 -0.41 4.84 -27.79 -0.13 -0.54 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.07 0.29 8.11 -51.93 -0.42 -0.13 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.40 5.53 8.56 -40.82 -0.35 5.18 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.50 6.51 -51.93 -0.34 2.17 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.09 1.08 7.67 -51.93 -0.40 0.68 16 47 H 0.08 0.85 8.12 -51.93 -0.42 0.42 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -33.76 378.83 -11.72 -45.48 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.64 Total: 3.54 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.20 Total: -2.63 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.35 Total: -59.35 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.76 -11.72 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962179499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.067 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds