Wall clock time and date at job start Tue Mar 31 2020 16:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46049 * 2 1 4 4 C 1.53109 * 109.46307 * 240.02320 * 2 1 3 5 5 C 1.53410 * 109.63985 * 169.93758 * 4 2 1 6 6 C 1.50716 * 108.33033 * 50.04537 * 5 4 2 7 7 N 1.34311 * 128.90341 * 163.26032 * 6 5 4 8 8 H 0.96996 * 124.98159 * 0.16731 * 7 6 5 9 9 N 1.28847 * 110.03944 * 180.14157 * 7 6 5 10 10 C 1.32203 * 110.14994 * 359.93611 * 9 7 6 11 11 C 1.47716 * 126.68137 * 180.02562 * 10 9 7 12 12 O 1.21567 * 120.00172 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99432 * 359.94844 * 11 10 9 14 14 C 1.46498 * 119.99648 * 180.02562 * 13 11 10 15 15 H 1.09001 * 115.51901 * 9.57913 * 14 13 11 16 16 C 1.53004 * 117.44025 * 224.23784 * 14 13 11 17 17 H 1.09003 * 119.53882 * 4.11754 * 16 14 13 18 18 C 1.54392 * 118.12225 * 160.80949 * 16 14 13 19 19 N 1.48143 * 104.61657 * 87.19103 * 18 16 14 20 20 C 1.36943 * 127.83806 * 140.41788 * 19 18 16 21 21 H 1.08003 * 119.99875 * 195.61381 * 20 19 18 22 22 C 1.38808 * 119.99976 * 15.61305 * 20 19 18 23 23 N 1.31621 * 120.00002 * 9.11069 * 22 20 19 24 24 Si 1.86801 * 119.99870 * 189.11248 * 22 20 19 25 25 H 1.48495 * 109.47161 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47016 * 119.99952 * 24 22 20 27 27 H 1.48499 * 109.46949 * 239.99723 * 24 22 20 28 28 C 1.48151 * 104.32484 * 320.41189 * 19 18 16 29 29 C 1.53000 * 117.44150 * 154.99941 * 14 13 11 30 30 H 1.08999 * 119.54155 * 354.28363 * 29 14 13 31 31 C 1.35574 * 123.87508 * 343.28699 * 6 5 4 32 32 C 1.50382 * 124.62180 * 359.83908 * 31 6 5 33 33 H 1.08998 * 109.46977 * 300.02331 * 1 2 3 34 34 H 1.09005 * 109.47028 * 60.01637 * 1 2 3 35 35 H 1.08994 * 109.47402 * 180.02562 * 1 2 3 36 36 H 1.09004 * 109.44007 * 290.00400 * 4 2 1 37 37 H 1.08997 * 109.44111 * 49.89694 * 4 2 1 38 38 H 1.09004 * 109.72163 * 290.31967 * 5 4 2 39 39 H 1.09003 * 109.67143 * 169.74082 * 5 4 2 40 40 H 0.96996 * 120.00167 * 359.97438 * 13 11 10 41 41 H 1.09003 * 110.40343 * 328.40721 * 18 16 14 42 42 H 1.09000 * 110.50496 * 206.02656 * 18 16 14 43 43 H 0.97001 * 119.99982 * 179.97438 * 23 22 20 44 44 H 1.08997 * 110.40954 * 280.80191 * 28 19 18 45 45 H 1.09000 * 110.40421 * 158.37092 * 28 19 18 46 46 H 1.09007 * 109.70006 * 224.00887 * 32 31 6 47 47 H 1.08996 * 109.73726 * 103.42815 * 32 31 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2505 5 6 3.5533 -0.5087 -1.3871 6 6 4.1998 -0.8415 -0.0670 7 7 5.4917 -1.0945 0.1995 8 1 6.2057 -1.0923 -0.4570 9 7 5.6436 -1.3400 1.4552 10 6 4.4801 -1.2628 2.0783 11 6 4.2350 -1.4766 3.5192 12 8 3.1091 -1.3740 3.9661 13 7 5.2596 -1.7860 4.3384 14 6 5.0164 -1.9986 5.7673 15 1 3.9685 -2.0501 6.0627 16 6 5.9950 -1.3558 6.7524 17 1 6.7911 -0.7129 6.3767 18 6 5.5390 -1.1724 8.2160 19 7 5.8890 -2.4499 8.8794 20 6 6.4018 -2.6308 10.1363 21 1 6.8448 -3.5777 10.4075 22 6 6.3521 -1.5973 11.0615 23 7 5.6579 -0.5106 10.7977 24 14 7.2706 -1.7487 12.6811 25 1 7.9687 -3.0583 12.7337 26 1 8.2658 -0.6519 12.7902 27 1 6.3069 -1.6565 13.8071 28 6 5.5582 -3.4873 7.8748 29 6 6.0076 -2.8821 6.5274 30 1 6.7974 -3.3972 5.9806 31 6 3.5223 -0.9369 1.1035 32 6 2.0414 -0.7231 1.2534 33 1 -0.3633 0.5142 0.8898 34 1 -0.3633 0.5136 -0.8902 35 1 -0.3634 -1.0276 0.0005 36 1 1.8295 -1.7874 -1.1657 37 1 1.5368 -0.3214 -2.1307 38 1 3.7569 0.5309 -1.6441 39 1 3.9471 -1.1636 -2.1644 40 1 6.1578 -1.8686 3.9817 41 1 4.4631 -1.0032 8.2605 42 1 6.0729 -0.3437 8.6812 43 1 5.6229 0.2115 11.4445 44 1 4.4854 -3.6796 7.8661 45 1 6.1082 -4.4054 8.0814 46 1 1.8456 -0.1130 2.1352 47 1 1.5388 -1.6851 1.3533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962179499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:26 Heat of formation + Delta-G solvation = 60.191263 kcal Electronic energy + Delta-G solvation = -27591.810654 eV Core-core repulsion = 23776.141723 eV Total energy + Delta-G solvation = -3815.668931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.89184 -41.03660 -39.67905 -38.44930 -36.10898 -34.45139 -33.65662 -32.51597 -32.11332 -30.49202 -28.95055 -27.78155 -27.37415 -25.49599 -24.26014 -23.30251 -22.17509 -21.94149 -21.13738 -20.88310 -20.01995 -18.88594 -18.72227 -18.05279 -17.56219 -17.01200 -16.72911 -15.81074 -15.77712 -15.57250 -15.37091 -15.10494 -14.89862 -14.65124 -14.47814 -14.12535 -13.98367 -13.77484 -13.44893 -13.36299 -13.24036 -12.96233 -12.90097 -12.74954 -12.47028 -12.14925 -12.01750 -11.90393 -11.87578 -11.69426 -11.67816 -11.56353 -11.42661 -11.09695 -10.84524 -10.74040 -10.41908 -9.74622 -9.63149 -8.93537 -7.92033 -5.29499 0.41858 1.06195 1.46708 1.47761 1.59126 1.72671 2.06641 2.19225 2.48296 2.84699 3.24042 3.30603 3.58183 3.60393 3.80258 3.82361 3.89115 3.94619 4.09545 4.12010 4.25350 4.26608 4.36122 4.49000 4.51121 4.61354 4.72505 4.79794 4.83682 4.87479 4.93841 4.97865 5.00639 5.04302 5.09894 5.20836 5.25727 5.32565 5.38617 5.43079 5.45586 5.49239 5.50699 5.57781 5.62777 6.08942 6.15467 6.39491 6.82233 6.98979 7.08681 7.66195 8.44853 9.22254 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.002140 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.562463 B =13082.212197 C =13622.067526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.108 4.108 5 C -0.044 4.044 6 C 0.030 3.970 7 N -0.352 5.352 8 H 0.464 0.536 9 N -0.270 5.270 10 C -0.031 4.031 11 C 0.602 3.398 12 O -0.563 6.563 13 N -0.673 5.673 14 C 0.115 3.885 15 H 0.111 0.889 16 C -0.183 4.183 17 H 0.119 0.881 18 C 0.191 3.809 19 N -0.617 5.617 20 C -0.239 4.239 21 H 0.085 0.915 22 C -0.066 4.066 23 N -0.950 5.950 24 Si 0.984 3.016 25 H -0.262 1.262 26 H -0.290 1.290 27 H -0.292 1.292 28 C 0.149 3.851 29 C -0.158 4.158 30 H 0.139 0.861 31 C -0.170 4.170 32 C -0.037 4.037 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.417 0.583 41 H -0.004 1.004 42 H 0.058 0.942 43 H 0.250 0.750 44 H 0.022 0.978 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.905 -0.098 -33.072 33.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.083 4.083 6 C -0.098 4.098 7 N -0.068 5.068 8 H 0.312 0.688 9 N -0.108 5.108 10 C -0.189 4.189 11 C 0.388 3.612 12 O -0.439 6.439 13 N -0.323 5.323 14 C 0.008 3.992 15 H 0.129 0.871 16 C -0.205 4.205 17 H 0.137 0.863 18 C 0.065 3.935 19 N -0.341 5.341 20 C -0.368 4.368 21 H 0.103 0.897 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.811 3.189 25 H -0.186 1.186 26 H -0.217 1.217 27 H -0.219 1.219 28 C 0.023 3.977 29 C -0.179 4.179 30 H 0.156 0.844 31 C -0.180 4.180 32 C -0.075 4.075 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.254 0.746 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.541 -0.178 -32.278 32.378 hybrid contribution 0.335 0.304 1.074 1.165 sum -2.206 0.126 -31.204 31.283 Atomic orbital electron populations 1.21811 0.94181 1.02129 1.02201 1.21247 0.96291 0.99481 0.93754 0.90896 1.21655 0.93781 1.01132 0.97976 1.20463 0.94762 1.04032 0.89008 1.21654 0.84468 1.04837 0.98864 1.43059 1.08978 1.48599 1.06187 0.68768 1.73753 1.23922 1.20182 0.92930 1.21324 0.91782 1.11773 0.94008 1.17222 0.84179 0.75758 0.84061 1.90770 1.23689 1.52844 1.76636 1.45033 1.11402 1.69539 1.06282 1.21443 0.96645 1.02428 0.78641 0.87122 1.24410 1.02998 0.97050 0.96006 0.86342 1.20754 0.95338 0.90238 0.87195 1.45493 1.74111 1.01723 1.12746 1.19455 1.30232 0.99867 0.87207 0.89683 1.25818 1.01018 0.97322 1.01779 1.70121 1.44497 1.08355 1.36771 0.84940 0.77497 0.77848 0.78570 1.18612 1.21708 1.21943 1.21283 0.97080 0.92501 0.86810 1.24213 1.02222 0.93486 0.97960 0.84379 1.20140 0.97743 1.08651 0.91469 1.20008 0.88410 1.00446 0.98685 0.93547 0.90734 0.92589 0.91769 0.88183 0.87801 0.87222 0.74631 0.98563 0.92351 0.94103 0.96001 0.91336 0.92733 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.16 71.98 0.66 -1.12 16 2 C -0.09 -1.22 2.70 -10.60 -0.03 -1.24 16 3 H 0.07 0.99 8.12 -2.38 -0.02 0.97 16 4 C -0.11 -0.84 5.19 30.77 0.16 -0.68 16 5 C -0.04 -0.26 6.31 29.99 0.19 -0.07 16 6 C 0.03 0.44 7.12 41.57 0.30 0.74 16 7 N -0.35 -4.85 6.82 -48.18 -0.33 -5.18 16 8 H 0.46 2.27 8.96 -219.80 -1.97 0.30 16 9 N -0.27 -5.95 11.96 -48.62 -0.58 -6.53 16 10 C -0.03 -0.85 7.12 42.15 0.30 -0.55 16 11 C 0.60 20.19 7.82 86.75 0.68 20.87 16 12 O -0.56 -22.67 15.37 -3.93 -0.06 -22.73 16 13 N -0.67 -20.82 5.56 -445.53 -2.48 -23.29 16 14 C 0.12 4.19 5.98 44.99 0.27 4.46 16 15 H 0.11 4.61 7.40 -2.39 -0.02 4.59 16 16 C -0.18 -7.38 7.06 -9.88 -0.07 -7.45 16 17 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 18 C 0.19 9.96 5.70 86.54 0.49 10.45 16 19 N -0.62 -33.04 3.38 -688.13 -2.33 -35.36 16 20 C -0.24 -13.68 10.35 84.03 0.87 -12.81 16 21 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 22 C -0.07 -3.83 5.40 84.86 0.46 -3.37 16 23 N -0.95 -58.84 10.86 21.65 0.24 -58.61 16 24 Si 0.98 46.32 29.56 68.60 2.03 48.35 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 C 0.15 6.41 7.04 86.53 0.61 7.02 16 29 C -0.16 -5.66 7.06 -9.88 -0.07 -5.73 16 30 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 31 C -0.17 -3.91 5.99 -20.03 -0.12 -4.03 16 32 C -0.04 -0.83 4.84 29.91 0.14 -0.68 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.60 8.12 -2.38 -0.02 0.59 16 37 H 0.10 0.33 8.11 -2.39 -0.02 0.31 16 38 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.42 10.81 8.56 -92.71 -0.79 10.01 16 41 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.06 3.40 6.51 -2.39 -0.02 3.38 16 43 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.05 1.51 7.67 -2.38 -0.02 1.49 16 47 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 Total: -1.00 -77.84 378.83 -0.43 -78.27 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -1.76 Total: 19.32 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 4.84 Total: 5.77 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -5.48 Total: -128.97 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.06 Total: -22.73 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -77.84 -0.43 -78.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962179499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.457 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds