Wall clock time and date at job start Tue Mar 31 2020 17:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.52951 * 2 1 4 4 C 1.53167 * 109.53250 * 120.14170 * 2 1 3 5 5 C 1.53215 * 109.54878 * 189.13239 * 4 2 1 6 6 N 1.46682 * 108.84158 * 309.36758 * 5 4 2 7 7 N 1.39622 * 127.22588 * 197.42846 * 6 5 4 8 8 C 1.30607 * 108.87174 * 179.65292 * 7 6 5 9 9 C 1.41472 * 108.07178 * 0.46394 * 8 7 6 10 10 C 1.47423 * 126.49122 * 179.82414 * 9 8 7 11 11 O 1.21603 * 120.00442 * 179.68727 * 10 9 8 12 12 N 1.34779 * 119.99785 * 359.68717 * 10 9 8 13 13 C 1.46498 * 120.00213 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.49297 * 9.61992 * 13 12 10 15 15 C 1.53002 * 117.44731 * 224.24302 * 13 12 10 16 16 H 1.09004 * 120.25599 * 3.82107 * 15 13 12 17 17 C 1.54790 * 117.94205 * 160.75426 * 15 13 12 18 18 N 1.48142 * 104.41509 * 87.46501 * 17 15 13 19 19 C 1.36941 * 127.83913 * 140.37064 * 18 17 15 20 20 H 1.08001 * 120.00294 * 195.57326 * 19 18 17 21 21 C 1.38818 * 119.99817 * 15.57284 * 19 18 17 22 22 N 1.31624 * 120.00001 * 9.17236 * 21 19 18 23 23 Si 1.86793 * 120.00024 * 189.17797 * 21 19 18 24 24 H 1.48493 * 109.47449 * 85.00062 * 23 21 19 25 25 H 1.48497 * 109.46969 * 324.99546 * 23 21 19 26 26 H 1.48500 * 109.47095 * 204.99927 * 23 21 19 27 27 C 1.48144 * 104.32599 * 320.10566 * 18 17 15 28 28 C 1.52997 * 117.44347 * 155.00090 * 13 12 10 29 29 H 1.08998 * 120.26587 * 356.17214 * 28 13 12 30 30 C 1.34596 * 124.43358 * 17.40274 * 6 5 4 31 31 C 1.50813 * 124.57704 * 0.06322 * 30 6 5 32 32 H 1.09005 * 109.46861 * 299.85646 * 1 2 3 33 33 H 1.08997 * 109.46782 * 59.85299 * 1 2 3 34 34 H 1.09001 * 109.47066 * 179.85585 * 1 2 3 35 35 H 1.09005 * 109.45510 * 69.10940 * 4 2 1 36 36 H 1.09000 * 109.44309 * 309.15414 * 4 2 1 37 37 H 1.09003 * 109.57239 * 189.56190 * 5 4 2 38 38 H 1.09002 * 109.57302 * 69.17844 * 5 4 2 39 39 H 1.08007 * 125.96843 * 180.27203 * 8 7 6 40 40 H 0.96999 * 119.99779 * 0.02562 * 12 10 9 41 41 H 1.08999 * 110.53920 * 328.72416 * 17 15 13 42 42 H 1.08997 * 110.46222 * 206.16450 * 17 15 13 43 43 H 0.96996 * 119.99851 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.40812 * 158.63555 * 27 18 17 45 45 H 1.08999 * 110.40686 * 280.94758 * 27 18 17 46 46 H 1.08997 * 109.71753 * 135.33568 * 31 30 6 47 47 H 1.09003 * 109.71511 * 255.99129 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0421 -0.7249 1.2483 5 6 3.5570 -0.5300 1.3691 6 7 4.1827 -0.8755 0.0882 7 7 5.5292 -1.1623 -0.1440 8 6 5.6918 -1.4290 -1.4122 9 6 4.4348 -1.3101 -2.0503 10 6 4.1553 -1.5201 -3.4825 11 8 3.0228 -1.3912 -3.9063 12 7 5.1550 -1.8549 -4.3221 13 6 4.8772 -2.0641 -5.7453 14 1 3.8801 -1.7736 -6.0763 15 6 5.5164 -3.2810 -6.4171 16 1 6.1003 -3.9894 -5.8293 17 6 4.9029 -3.7807 -7.7475 18 7 5.5925 -2.9885 -8.7922 19 6 6.0325 -3.4154 -10.0167 20 1 6.7341 -2.8158 -10.5776 21 6 5.5766 -4.6189 -10.5371 22 7 4.5915 -5.2608 -9.9454 23 14 6.3613 -5.3276 -12.0770 24 1 7.5671 -6.1095 -11.7032 25 1 6.7513 -4.2214 -12.9877 26 1 5.3892 -6.2152 -12.7643 27 6 5.6923 -1.6280 -8.2144 28 6 6.0331 -1.8606 -6.7267 29 1 7.0018 -1.5109 -6.3696 30 6 3.5223 -0.9676 -1.0811 31 6 2.0428 -0.7284 -1.2496 32 1 -0.3633 0.5116 0.8913 33 1 -0.3633 0.5161 -0.8887 34 1 -0.3633 -1.0277 -0.0026 35 1 1.8181 -1.7886 1.1680 36 1 1.5518 -0.3162 2.1319 37 1 3.9473 -1.1790 2.1530 38 1 3.7731 0.5104 1.6123 39 1 6.6238 -1.6913 -1.8908 40 1 6.0582 -1.9580 -3.9840 41 1 3.8303 -3.5880 -7.7702 42 1 5.1019 -4.8438 -7.8833 43 1 4.2733 -6.1019 -10.3088 44 1 6.4875 -1.0650 -8.7031 45 1 4.7417 -1.1035 -8.3109 46 1 1.8681 -0.1120 -2.1314 47 1 1.5262 -1.6821 -1.3584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962435334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:45 Heat of formation + Delta-G solvation = 90.015578 kcal Electronic energy + Delta-G solvation = -27637.910851 eV Core-core repulsion = 23823.535199 eV Total energy + Delta-G solvation = -3814.375652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.93758 -39.46330 -38.07127 -37.52402 -34.37399 -33.36068 -32.53953 -31.39052 -30.35182 -29.11682 -27.11484 -27.05544 -25.60526 -24.38513 -22.88678 -22.02916 -21.28013 -20.36522 -19.96894 -19.22469 -19.18288 -17.63626 -16.82181 -16.28973 -16.01564 -15.66687 -15.29702 -14.92646 -14.74653 -14.55969 -14.18211 -14.02394 -13.94043 -13.55271 -13.27150 -13.12392 -12.74824 -12.70686 -12.58634 -12.14237 -12.11471 -11.60089 -11.49545 -11.40116 -11.36676 -11.21173 -10.95393 -10.87790 -10.80356 -10.33902 -10.14569 -10.11504 -9.72419 -9.67607 -9.60220 -9.10615 -8.85750 -8.68833 -8.19702 -6.83146 -5.76290 -3.10720 1.37428 2.01261 2.03066 3.30794 3.41272 3.45705 3.47492 3.47861 3.91225 4.07409 4.15954 4.20348 4.40513 4.50494 4.55575 4.67297 4.83499 4.84182 5.01652 5.11236 5.14365 5.23081 5.26758 5.28645 5.31076 5.41263 5.42463 5.46634 5.59570 5.64903 5.70066 5.82011 5.84441 5.88839 5.96316 6.19092 6.24255 6.34881 6.57851 6.59015 6.73412 6.92454 6.94331 7.34178 7.41577 7.58208 7.74510 7.75838 8.24477 8.45688 9.14290 9.76984 10.54513 11.37952 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.002151 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.345076 B =13013.007071 C =13536.428728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.131 3.869 6 N -0.362 5.362 7 N -0.298 5.298 8 C 0.081 3.919 9 C -0.290 4.290 10 C 0.597 3.403 11 O -0.546 6.546 12 N -0.694 5.694 13 C 0.105 3.895 14 H 0.132 0.868 15 C -0.183 4.183 16 H 0.102 0.898 17 C 0.185 3.815 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.280 1.280 26 H -0.290 1.290 27 C 0.156 3.844 28 C -0.185 4.185 29 H 0.103 0.897 30 C 0.160 3.840 31 C -0.056 4.056 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.190 0.810 40 H 0.396 0.604 41 H 0.026 0.974 42 H 0.090 0.910 43 H 0.255 0.745 44 H 0.051 0.949 45 H 0.027 0.973 46 H 0.108 0.892 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 10.642 25.795 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.096 0.904 4 C -0.173 4.173 5 C 0.010 3.990 6 N -0.142 5.142 7 N -0.116 5.116 8 C -0.107 4.107 9 C -0.305 4.305 10 C 0.385 3.615 11 O -0.424 6.424 12 N -0.342 5.342 13 C -0.001 4.001 14 H 0.150 0.850 15 C -0.205 4.205 16 H 0.120 0.880 17 C 0.059 3.941 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.206 1.206 26 H -0.217 1.217 27 C 0.029 3.971 28 C -0.206 4.206 29 H 0.121 0.879 30 C 0.028 3.972 31 C -0.094 4.094 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.206 0.794 40 H 0.230 0.770 41 H 0.044 0.956 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.126 0.874 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.296 10.683 26.577 28.964 hybrid contribution 0.844 -0.624 -1.236 1.621 sum -3.452 10.059 25.341 27.482 Atomic orbital electron populations 1.21794 0.93552 1.02537 1.02399 1.21361 0.97118 0.99782 0.93734 0.90372 1.22095 0.92728 1.02684 0.99815 1.21913 0.92719 1.02201 0.82138 1.48568 1.05672 1.52703 1.07300 1.77094 0.93792 1.22980 1.17771 1.24114 0.98209 0.97477 0.90866 1.19857 0.93687 1.22242 0.94718 1.17109 0.84560 0.75907 0.83905 1.90751 1.21414 1.52396 1.77861 1.45119 1.10879 1.70460 1.07748 1.21793 0.98384 1.01907 0.78027 0.85009 1.24805 1.04238 0.90596 1.00834 0.88017 1.21138 0.93421 0.98146 0.81368 1.45199 1.68358 1.03286 1.14861 1.18984 1.19506 1.04152 0.92846 0.90556 1.24913 0.97479 0.99139 0.98807 1.69902 1.27263 1.17412 1.41497 0.86123 0.78305 0.78868 0.82361 1.21493 1.20609 1.21652 1.21116 0.98142 0.89238 0.88614 1.24306 0.97680 1.02135 0.96520 0.87897 1.21401 0.95543 0.94872 0.85381 1.20692 0.86532 1.02933 0.99264 0.92275 0.91776 0.92131 0.90327 0.88728 0.88590 0.89511 0.79367 0.76995 0.95571 0.89179 0.93528 0.93046 0.95535 0.87407 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.17 37.16 0.34 -0.39 16 2 C -0.10 -0.62 2.76 -90.29 -0.25 -0.86 16 3 H 0.08 0.48 8.12 -51.93 -0.42 0.05 16 4 C -0.13 -0.64 5.23 -26.53 -0.14 -0.78 16 5 C 0.13 0.81 7.27 -3.83 -0.03 0.78 16 6 N -0.36 -3.73 4.01 -56.40 -0.23 -3.96 16 7 N -0.30 -3.53 12.54 30.93 0.39 -3.14 16 8 C 0.08 0.90 11.51 -16.84 -0.19 0.71 16 9 C -0.29 -3.72 6.12 -105.21 -0.64 -4.36 16 10 C 0.60 9.07 7.81 -12.52 -0.10 8.97 16 11 O -0.55 -9.92 14.99 5.27 0.08 -9.84 16 12 N -0.69 -9.84 5.56 -54.88 -0.30 -10.15 16 13 C 0.10 1.81 5.97 -67.93 -0.41 1.40 16 14 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 15 C -0.18 -3.55 7.08 -89.00 -0.63 -4.18 16 16 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 17 C 0.19 4.55 5.72 -2.20 -0.01 4.54 16 18 N -0.59 -15.39 3.37 -168.61 -0.57 -15.96 16 19 C -0.23 -6.36 10.35 -15.06 -0.16 -6.52 16 20 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 21 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 22 N -0.91 -27.09 10.87 55.49 0.60 -26.48 16 23 Si 0.91 22.08 29.56 -169.99 -5.03 17.05 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.16 3.31 7.03 -2.41 -0.02 3.29 16 28 C -0.19 -3.31 7.06 -89.22 -0.63 -3.94 16 29 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 30 C 0.16 1.82 6.66 -81.61 -0.54 1.28 16 31 C -0.06 -0.52 4.68 -27.59 -0.13 -0.65 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.09 0.24 8.12 -51.93 -0.42 -0.19 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.19 1.48 7.51 -52.48 -0.39 1.08 16 40 H 0.40 4.45 7.79 -40.82 -0.32 4.13 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.46 6.52 -51.93 -0.34 2.12 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.16 7.47 -51.93 -0.39 0.77 16 47 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -34.28 378.79 -10.26 -44.53 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.28 Total: 3.21 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.63 Total: -0.97 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.11 Total: -59.69 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.28 -10.26 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962435334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.549 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds