Wall clock time and date at job start Tue Mar 31 2020 17:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.52951 * 2 1 4 4 C 1.53167 * 109.53250 * 120.14170 * 2 1 3 5 5 C 1.53215 * 109.54878 * 189.13239 * 4 2 1 6 6 N 1.46682 * 108.84158 * 309.36758 * 5 4 2 7 7 N 1.39622 * 127.22588 * 197.42846 * 6 5 4 8 8 C 1.30607 * 108.87174 * 179.65292 * 7 6 5 9 9 C 1.41472 * 108.07178 * 0.46394 * 8 7 6 10 10 C 1.47423 * 126.49122 * 179.82414 * 9 8 7 11 11 O 1.21603 * 120.00442 * 179.68727 * 10 9 8 12 12 N 1.34779 * 119.99785 * 359.68717 * 10 9 8 13 13 C 1.46498 * 120.00213 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.49297 * 9.61992 * 13 12 10 15 15 C 1.53002 * 117.44731 * 224.24302 * 13 12 10 16 16 H 1.09004 * 120.25599 * 3.82107 * 15 13 12 17 17 C 1.54790 * 117.94205 * 160.75426 * 15 13 12 18 18 N 1.48142 * 104.41509 * 87.46501 * 17 15 13 19 19 C 1.36941 * 127.83913 * 140.37064 * 18 17 15 20 20 H 1.08001 * 120.00294 * 195.57326 * 19 18 17 21 21 C 1.38818 * 119.99817 * 15.57284 * 19 18 17 22 22 N 1.31624 * 120.00001 * 9.17236 * 21 19 18 23 23 Si 1.86793 * 120.00024 * 189.17797 * 21 19 18 24 24 H 1.48493 * 109.47449 * 85.00062 * 23 21 19 25 25 H 1.48497 * 109.46969 * 324.99546 * 23 21 19 26 26 H 1.48500 * 109.47095 * 204.99927 * 23 21 19 27 27 C 1.48144 * 104.32599 * 320.10566 * 18 17 15 28 28 C 1.52997 * 117.44347 * 155.00090 * 13 12 10 29 29 H 1.08998 * 120.26587 * 356.17214 * 28 13 12 30 30 C 1.34596 * 124.43358 * 17.40274 * 6 5 4 31 31 C 1.50813 * 124.57704 * 0.06322 * 30 6 5 32 32 H 1.09005 * 109.46861 * 299.85646 * 1 2 3 33 33 H 1.08997 * 109.46782 * 59.85299 * 1 2 3 34 34 H 1.09001 * 109.47066 * 179.85585 * 1 2 3 35 35 H 1.09005 * 109.45510 * 69.10940 * 4 2 1 36 36 H 1.09000 * 109.44309 * 309.15414 * 4 2 1 37 37 H 1.09003 * 109.57239 * 189.56190 * 5 4 2 38 38 H 1.09002 * 109.57302 * 69.17844 * 5 4 2 39 39 H 1.08007 * 125.96843 * 180.27203 * 8 7 6 40 40 H 0.96999 * 119.99779 * 0.02562 * 12 10 9 41 41 H 1.08999 * 110.53920 * 328.72416 * 17 15 13 42 42 H 1.08997 * 110.46222 * 206.16450 * 17 15 13 43 43 H 0.96996 * 119.99851 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.40812 * 158.63555 * 27 18 17 45 45 H 1.08999 * 110.40686 * 280.94758 * 27 18 17 46 46 H 1.08997 * 109.71753 * 135.33568 * 31 30 6 47 47 H 1.09003 * 109.71511 * 255.99129 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0421 -0.7249 1.2483 5 6 3.5570 -0.5300 1.3691 6 7 4.1827 -0.8755 0.0882 7 7 5.5292 -1.1623 -0.1440 8 6 5.6918 -1.4290 -1.4122 9 6 4.4348 -1.3101 -2.0503 10 6 4.1553 -1.5201 -3.4825 11 8 3.0228 -1.3912 -3.9063 12 7 5.1550 -1.8549 -4.3221 13 6 4.8772 -2.0641 -5.7453 14 1 3.8801 -1.7736 -6.0763 15 6 5.5164 -3.2810 -6.4171 16 1 6.1003 -3.9894 -5.8293 17 6 4.9029 -3.7807 -7.7475 18 7 5.5925 -2.9885 -8.7922 19 6 6.0325 -3.4154 -10.0167 20 1 6.7341 -2.8158 -10.5776 21 6 5.5766 -4.6189 -10.5371 22 7 4.5915 -5.2608 -9.9454 23 14 6.3613 -5.3276 -12.0770 24 1 7.5671 -6.1095 -11.7032 25 1 6.7513 -4.2214 -12.9877 26 1 5.3892 -6.2152 -12.7643 27 6 5.6923 -1.6280 -8.2144 28 6 6.0331 -1.8606 -6.7267 29 1 7.0018 -1.5109 -6.3696 30 6 3.5223 -0.9676 -1.0811 31 6 2.0428 -0.7284 -1.2496 32 1 -0.3633 0.5116 0.8913 33 1 -0.3633 0.5161 -0.8887 34 1 -0.3633 -1.0277 -0.0026 35 1 1.8181 -1.7886 1.1680 36 1 1.5518 -0.3162 2.1319 37 1 3.9473 -1.1790 2.1530 38 1 3.7731 0.5104 1.6123 39 1 6.6238 -1.6913 -1.8908 40 1 6.0582 -1.9580 -3.9840 41 1 3.8303 -3.5880 -7.7702 42 1 5.1019 -4.8438 -7.8833 43 1 4.2733 -6.1019 -10.3088 44 1 6.4875 -1.0650 -8.7031 45 1 4.7417 -1.1035 -8.3109 46 1 1.8681 -0.1120 -2.1314 47 1 1.5262 -1.6821 -1.3584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962435334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:44 Heat of formation + Delta-G solvation = 67.894222 kcal Electronic energy + Delta-G solvation = -27638.870105 eV Core-core repulsion = 23823.535199 eV Total energy + Delta-G solvation = -3815.334906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.75881 -40.87510 -39.51259 -38.14002 -36.03223 -34.37856 -33.91200 -32.16111 -32.11412 -29.93514 -28.88255 -27.90861 -27.39387 -25.10564 -24.03152 -23.07109 -22.43345 -21.88360 -21.02727 -20.80827 -19.95605 -18.85768 -18.62360 -17.54715 -16.87833 -16.72311 -16.57627 -15.95186 -15.72958 -15.68007 -15.39978 -15.08654 -14.86850 -14.79522 -14.64708 -14.59133 -13.86752 -13.71100 -13.34989 -13.31941 -13.20736 -13.08546 -12.87361 -12.68931 -12.58471 -12.31017 -12.10922 -12.02078 -11.92815 -11.86188 -11.68926 -11.62487 -11.52067 -10.95747 -10.79446 -10.67686 -10.37978 -9.88327 -9.49980 -8.91365 -7.90445 -5.27729 0.46041 1.10672 1.31893 1.47479 1.50130 1.58468 2.09218 2.33001 2.50063 2.93767 3.28890 3.33044 3.43639 3.62097 3.62239 3.66291 3.86292 3.89335 3.97382 4.00828 4.16869 4.22908 4.26154 4.35331 4.41857 4.52295 4.58006 4.59312 4.68033 4.76073 4.81907 4.87131 4.91301 4.94533 5.01675 5.07577 5.10089 5.28016 5.30761 5.38012 5.41701 5.44685 5.48170 5.59785 5.65819 5.84968 6.17737 6.47857 6.64726 7.00922 7.29472 7.68349 8.47127 9.23453 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.002151 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.345076 B =13013.007071 C =13536.428728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.358 5.358 7 N -0.317 5.317 8 C 0.087 3.913 9 C -0.316 4.316 10 C 0.597 3.403 11 O -0.584 6.584 12 N -0.680 5.680 13 C 0.125 3.875 14 H 0.107 0.893 15 C -0.188 4.188 16 H 0.121 0.879 17 C 0.190 3.810 18 N -0.617 5.617 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.983 3.017 24 H -0.282 1.282 25 H -0.267 1.267 26 H -0.296 1.296 27 C 0.148 3.852 28 C -0.160 4.160 29 H 0.141 0.859 30 C 0.158 3.842 31 C -0.056 4.056 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.218 0.782 40 H 0.415 0.585 41 H -0.006 1.006 42 H 0.056 0.944 43 H 0.250 0.750 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.087 0.913 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 11.890 28.129 30.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.165 4.165 5 C 0.001 3.999 6 N -0.137 5.137 7 N -0.136 5.136 8 C -0.101 4.101 9 C -0.331 4.331 10 C 0.387 3.613 11 O -0.465 6.465 12 N -0.329 5.329 13 C 0.018 3.982 14 H 0.125 0.875 15 C -0.209 4.209 16 H 0.139 0.861 17 C 0.063 3.937 18 N -0.341 5.341 19 C -0.368 4.368 20 H 0.102 0.898 21 C -0.259 4.259 22 N -0.597 5.597 23 Si 0.811 3.189 24 H -0.209 1.209 25 H -0.192 1.192 26 H -0.222 1.222 27 C 0.022 3.978 28 C -0.181 4.181 29 H 0.158 0.842 30 C 0.024 3.976 31 C -0.095 4.095 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.234 0.766 40 H 0.252 0.748 41 H 0.012 0.988 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.106 0.894 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.765 11.969 28.969 31.466 hybrid contribution 0.297 -0.939 -1.904 2.144 sum -2.468 11.030 27.065 29.331 Atomic orbital electron populations 1.21782 0.92706 1.02635 1.02936 1.21329 0.97730 0.99547 0.92731 0.90080 1.22105 0.91830 1.02402 1.00187 1.22349 0.93402 1.03482 0.80712 1.48936 1.05191 1.51494 1.08113 1.77057 0.94778 1.23627 1.18101 1.24540 0.98579 0.96434 0.90504 1.19760 0.95231 1.24593 0.93514 1.17474 0.83974 0.74991 0.84887 1.90736 1.22996 1.54091 1.78654 1.44880 1.11851 1.70116 1.06079 1.21326 0.97219 0.99852 0.79781 0.87520 1.24487 1.05292 0.91794 0.99372 0.86087 1.20849 0.92054 0.96470 0.84283 1.45508 1.68307 1.05430 1.14888 1.19410 1.19309 1.04339 0.93780 0.89773 1.25807 0.98199 0.99707 1.02191 1.70115 1.28898 1.17576 1.43143 0.85030 0.77107 0.78093 0.78687 1.20913 1.19162 1.22237 1.21280 0.98373 0.87306 0.90833 1.24230 0.99200 1.00144 0.94480 0.84159 1.21684 0.96227 0.93961 0.85751 1.20710 0.85732 1.02658 1.00386 0.90305 0.92693 0.92261 0.90812 0.85509 0.87257 0.87869 0.76551 0.74780 0.98779 0.92529 0.94137 0.91532 0.96264 0.89414 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.17 71.98 0.66 -0.57 16 2 C -0.09 -1.00 2.76 -10.58 -0.03 -1.03 16 3 H 0.08 0.84 8.12 -2.38 -0.02 0.82 16 4 C -0.13 -0.85 5.23 30.72 0.16 -0.69 16 5 C 0.12 1.16 7.27 86.42 0.63 1.79 16 6 N -0.36 -6.73 4.01 -332.36 -1.33 -8.06 16 7 N -0.32 -6.88 12.54 -56.06 -0.70 -7.58 16 8 C 0.09 1.76 11.51 85.67 0.99 2.74 16 9 C -0.32 -7.83 6.12 -20.25 -0.12 -7.95 16 10 C 0.60 17.97 7.81 86.66 0.68 18.64 16 11 O -0.58 -21.87 14.99 -4.04 -0.06 -21.93 16 12 N -0.68 -18.32 5.56 -445.81 -2.48 -20.79 16 13 C 0.13 4.27 5.97 44.99 0.27 4.54 16 14 H 0.11 4.28 7.40 -2.39 -0.02 4.26 16 15 C -0.19 -7.22 7.08 -9.75 -0.07 -7.29 16 16 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 17 C 0.19 9.70 5.72 86.67 0.50 10.20 16 18 N -0.62 -32.60 3.37 -687.35 -2.32 -34.92 16 19 C -0.24 -13.60 10.35 84.03 0.87 -12.73 16 20 H 0.08 4.52 7.85 -2.91 -0.02 4.49 16 21 C -0.07 -3.78 5.40 84.86 0.46 -3.32 16 22 N -0.95 -58.42 10.87 21.65 0.24 -58.19 16 23 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 27 C 0.15 6.22 7.03 86.54 0.61 6.83 16 28 C -0.16 -5.42 7.06 -9.89 -0.07 -5.49 16 29 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 30 C 0.16 3.48 6.66 41.99 0.28 3.76 16 31 C -0.06 -1.05 4.68 30.04 0.14 -0.91 16 32 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.61 8.12 -2.38 -0.02 0.59 16 36 H 0.13 0.11 8.12 -2.39 -0.02 0.09 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.22 2.74 7.51 -2.91 -0.02 2.72 16 40 H 0.41 8.13 7.79 -92.71 -0.72 7.40 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.06 3.25 6.52 -2.39 -0.02 3.23 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 2.00 7.47 -2.39 -0.02 1.98 16 47 H 0.09 1.80 8.11 -2.39 -0.02 1.78 16 Total: -1.00 -77.60 378.79 1.57 -76.03 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.26 Total: 18.91 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.94 Total: 8.51 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -6.60 Total: -129.54 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.93 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.60 1.57 -76.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962435334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.926 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds