Wall clock time and date at job start Tue Mar 31 2020 17:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45862 * 2 1 4 4 C 1.53035 * 109.45992 * 119.97349 * 2 1 3 5 5 C 1.53199 * 109.31140 * 181.38484 * 4 2 1 6 6 N 1.46925 * 108.77412 * 305.36542 * 5 4 2 7 7 C 1.36931 * 120.63006 * 233.58706 * 6 5 4 8 8 H 1.08004 * 120.00455 * 151.56331 * 7 6 5 9 9 C 1.38813 * 120.00058 * 331.83213 * 7 6 5 10 10 N 1.31618 * 120.00123 * 343.07986 * 9 7 6 11 11 Si 1.86802 * 120.00017 * 163.07580 * 9 7 6 12 12 H 1.48501 * 109.47198 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47083 * 120.00248 * 11 9 7 14 14 H 1.48499 * 109.47192 * 240.00116 * 11 9 7 15 15 C 1.46927 * 118.73755 * 53.86099 * 6 5 4 16 16 C 1.53038 * 109.45795 * 240.04413 * 2 1 3 17 17 H 1.08999 * 109.49747 * 298.56747 * 16 2 1 18 18 N 1.46505 * 109.50015 * 58.63159 * 16 2 1 19 19 C 1.34769 * 119.99911 * 205.00037 * 18 16 2 20 20 O 1.21284 * 120.00301 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00133 * 180.02562 * 19 18 16 22 22 C 1.53000 * 109.46924 * 299.99833 * 21 19 18 23 23 C 1.52997 * 109.47555 * 179.97438 * 22 21 19 24 24 C 1.52998 * 109.47155 * 59.99803 * 23 22 21 25 25 F 1.39898 * 109.47338 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.47002 * 60.00189 * 24 23 22 27 27 C 1.53002 * 109.47397 * 300.00371 * 24 23 22 28 28 C 1.52999 * 109.47512 * 180.02562 * 21 19 18 29 29 H 1.08999 * 109.47046 * 300.02809 * 1 2 3 30 30 H 1.09008 * 109.47067 * 60.02262 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.49796 * 61.43268 * 4 2 1 33 33 H 1.08993 * 109.52862 * 301.35148 * 4 2 1 34 34 H 1.08998 * 109.58561 * 185.58027 * 5 4 2 35 35 H 1.08992 * 109.70278 * 65.22534 * 5 4 2 36 36 H 0.97002 * 120.00421 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.58271 * 65.92842 * 15 6 5 38 38 H 1.09001 * 109.58377 * 186.35089 * 15 6 5 39 39 H 0.96998 * 119.99805 * 24.99810 * 18 16 2 40 40 H 1.09000 * 109.47559 * 59.99580 * 21 19 18 41 41 H 1.09005 * 109.47487 * 300.00078 * 22 21 19 42 42 H 1.09007 * 109.47560 * 59.99814 * 22 21 19 43 43 H 1.09005 * 109.46874 * 300.00560 * 23 22 21 44 44 H 1.08997 * 109.48043 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.47076 * 300.00266 * 27 24 23 46 46 H 1.08995 * 109.47257 * 179.97438 * 27 24 23 47 47 H 1.09006 * 109.47052 * 299.99843 * 28 21 19 48 48 H 1.08996 * 109.47069 * 59.99670 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5714 -0.6887 1.2641 6 7 4.0678 -1.2488 -0.0003 7 6 4.9763 -2.2733 -0.0004 8 1 5.0013 -2.9729 -0.8229 9 6 5.8616 -2.4161 1.0592 10 7 6.0662 -1.4124 1.8857 11 14 6.7625 -4.0329 1.3122 12 1 6.3606 -4.9944 0.2543 13 1 8.2273 -3.8001 1.2383 14 1 6.4164 -4.5891 2.6448 15 6 3.5755 -0.6846 -1.2644 16 6 2.0398 -0.7205 -1.2502 17 1 1.6977 -1.7554 -1.2386 18 7 1.5249 -0.0487 -2.4460 19 6 1.3964 -0.7323 -3.6003 20 8 1.7075 -1.9036 -3.6493 21 6 0.8673 -0.0412 -4.8305 22 6 -0.5425 0.4846 -4.5534 23 6 -1.0796 1.1869 -5.8021 24 6 -1.1249 0.1944 -6.9657 25 9 -1.6155 0.8367 -8.1076 26 9 -1.9645 -0.8745 -6.6344 27 6 0.2849 -0.3314 -7.2428 28 6 0.8213 -1.0343 -5.9935 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5135 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6978 -1.7558 1.2381 33 1 1.6573 -0.2215 2.1400 34 1 3.9417 -1.2848 2.0981 35 1 3.9164 0.3399 1.3685 36 1 6.6846 -1.5123 2.6264 37 1 3.9189 0.3452 -1.3631 38 1 3.9486 -1.2779 -2.0992 39 1 1.2764 0.8881 -2.4069 40 1 1.5213 0.7916 -5.0891 41 1 -1.1967 -0.3482 -4.2949 42 1 -0.5103 1.1920 -3.7247 43 1 -0.4254 2.0197 -6.0603 44 1 -2.0838 1.5619 -5.6047 45 1 0.9391 0.5014 -7.5009 46 1 0.2525 -1.0387 -8.0714 47 1 1.8255 -1.4093 -6.1911 48 1 0.1670 -1.8667 -5.7347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968354050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:11 Heat of formation + Delta-G solvation = -144.665236 kcal Electronic energy + Delta-G solvation = -29827.573223 eV Core-core repulsion = 25552.331861 eV Total energy + Delta-G solvation = -4275.241362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.22767 -47.21449 -40.19469 -38.16315 -36.88506 -34.50942 -33.06670 -31.48951 -31.12843 -30.68323 -28.74703 -27.25239 -24.29875 -23.79091 -23.47164 -22.12386 -21.07257 -20.65553 -19.98521 -19.26599 -17.71749 -17.12553 -17.01025 -16.80949 -16.53540 -15.72136 -15.01439 -14.77577 -14.40667 -14.35672 -14.06200 -13.80833 -13.69190 -13.54305 -13.52708 -13.32328 -13.31632 -13.04238 -12.77534 -12.53770 -12.47126 -12.06113 -12.02890 -11.86739 -11.62402 -11.59929 -11.49278 -11.06000 -11.00603 -10.81425 -10.66211 -10.47719 -10.27916 -10.14946 -9.92101 -9.84130 -9.64269 -9.40235 -8.79839 -8.40061 -6.66815 -5.78612 -3.21440 2.79406 3.29076 3.38839 3.44341 3.46877 3.51029 3.73393 4.01031 4.04172 4.46546 4.51904 4.56571 4.70114 4.78982 4.87445 5.01434 5.10452 5.21507 5.27113 5.30513 5.36488 5.39157 5.42520 5.46011 5.58339 5.61881 5.65088 5.84103 5.88387 5.94967 6.02906 6.06221 6.16530 6.20785 6.27453 6.55280 6.61861 6.67759 6.72459 6.82505 6.99848 7.34830 7.64373 7.73563 7.83554 8.41964 8.48263 9.22179 9.84364 10.40156 11.29931 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002774 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.649141 B =10090.116388 C =10945.632789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.588 5.588 7 C -0.249 4.249 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.143 3.857 16 C 0.132 3.868 17 H 0.086 0.914 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.533 6.533 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.155 4.155 24 C 0.286 3.714 25 F -0.205 7.205 26 F -0.198 7.198 27 C -0.158 4.158 28 C -0.100 4.100 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.018 0.982 36 H 0.253 0.747 37 H 0.016 0.984 38 H 0.057 0.943 39 H 0.393 0.607 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 8.897 -13.631 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.379 4.379 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.217 1.217 14 H -0.215 1.215 15 C 0.015 3.985 16 C 0.027 3.973 17 H 0.104 0.896 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.409 6.409 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.193 4.193 24 C 0.250 3.750 25 F -0.186 7.186 26 F -0.179 7.179 27 C -0.196 4.196 28 C -0.138 4.138 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.227 0.773 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.133 8.008 -13.537 21.826 hybrid contribution 0.240 -0.219 0.120 0.346 sum -14.894 7.789 -13.417 21.506 Atomic orbital electron populations 1.21850 0.96041 1.01553 1.00646 1.21300 0.94507 0.99620 0.95565 0.91554 1.22241 1.00647 0.99556 0.94864 1.20834 0.87322 0.97303 0.90378 1.44009 1.48228 1.39652 0.99156 1.19257 1.09365 1.02583 1.06705 0.91572 1.25036 0.97201 0.97504 0.99862 1.70041 1.37622 1.28985 1.18214 0.86225 0.79144 0.83677 0.77805 1.20138 1.21734 1.21534 1.21271 0.90111 0.96476 0.90668 1.21854 0.96617 0.96925 0.81938 0.89609 1.46138 1.66031 1.14127 1.10688 1.20333 0.78187 0.87219 0.84289 1.90745 1.49453 1.16207 1.84464 1.21439 0.97691 0.99768 0.94462 1.21512 0.95203 1.01165 0.96965 1.22507 1.04631 0.98174 0.94030 1.21167 0.88099 0.82498 0.83262 1.93004 1.89739 1.82358 1.53467 1.93009 1.74128 1.58085 1.92687 1.22571 0.93200 1.02966 1.00824 1.21333 1.03630 0.97654 0.91163 0.93012 0.93452 0.92944 0.92438 0.92763 0.89324 0.96346 0.93719 0.96567 0.92435 0.77341 0.88093 0.90136 0.89851 0.88468 0.89146 0.88651 0.89141 0.89416 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.02 37.16 0.34 -1.43 16 2 C -0.09 -1.39 2.27 -90.58 -0.21 -1.60 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 5 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 6 N -0.59 -14.76 2.99 -172.05 -0.51 -15.27 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 8 H 0.07 1.88 7.88 -52.48 -0.41 1.46 16 9 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 10 N -0.90 -26.16 11.20 55.49 0.62 -25.54 16 11 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 C 0.14 3.03 6.12 -3.49 -0.02 3.01 16 16 C 0.13 2.26 2.08 -67.59 -0.14 2.12 16 17 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 18 N -0.72 -9.33 4.26 -53.47 -0.23 -9.55 16 19 C 0.51 7.04 7.12 -10.99 -0.08 6.96 16 20 O -0.53 -9.89 15.64 5.55 0.09 -9.80 16 21 C -0.11 -1.02 2.53 -91.77 -0.23 -1.25 16 22 C -0.11 -0.81 4.98 -26.73 -0.13 -0.94 16 23 C -0.16 -1.00 5.45 -26.73 -0.15 -1.14 16 24 C 0.29 2.45 2.10 -26.73 -0.06 2.40 16 25 F -0.20 -2.01 17.06 2.25 0.04 -1.97 16 26 F -0.20 -2.16 16.02 2.25 0.04 -2.12 16 27 C -0.16 -1.19 5.46 -26.70 -0.15 -1.34 16 28 C -0.10 -0.96 4.37 -26.70 -0.12 -1.08 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.49 7.36 -51.92 -0.38 0.11 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 39 H 0.39 3.82 7.72 -40.82 -0.32 3.50 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.71 7.80 -51.93 -0.41 0.31 16 42 H 0.08 0.47 7.56 -51.93 -0.39 0.08 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 48 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -32.32 376.51 -8.71 -41.02 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -8.06 Total: 0.71 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.33 Total: -0.13 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.12 Total: -50.36 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.07 Total: -4.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.32 -8.71 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968354050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.643 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds