Wall clock time and date at job start Tue Mar 31 2020 17:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.45862 * 2 1 4 4 C 1.53035 * 109.45992 * 119.97349 * 2 1 3 5 5 C 1.53199 * 109.31140 * 181.38484 * 4 2 1 6 6 N 1.46925 * 108.77412 * 305.36542 * 5 4 2 7 7 C 1.36931 * 120.63006 * 233.58706 * 6 5 4 8 8 H 1.08004 * 120.00455 * 151.56331 * 7 6 5 9 9 C 1.38813 * 120.00058 * 331.83213 * 7 6 5 10 10 N 1.31618 * 120.00123 * 343.07986 * 9 7 6 11 11 Si 1.86802 * 120.00017 * 163.07580 * 9 7 6 12 12 H 1.48501 * 109.47198 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47083 * 120.00248 * 11 9 7 14 14 H 1.48499 * 109.47192 * 240.00116 * 11 9 7 15 15 C 1.46927 * 118.73755 * 53.86099 * 6 5 4 16 16 C 1.53038 * 109.45795 * 240.04413 * 2 1 3 17 17 H 1.08999 * 109.49747 * 298.56747 * 16 2 1 18 18 N 1.46505 * 109.50015 * 58.63159 * 16 2 1 19 19 C 1.34769 * 119.99911 * 205.00037 * 18 16 2 20 20 O 1.21284 * 120.00301 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00133 * 180.02562 * 19 18 16 22 22 C 1.53000 * 109.46924 * 299.99833 * 21 19 18 23 23 C 1.52997 * 109.47555 * 179.97438 * 22 21 19 24 24 C 1.52998 * 109.47155 * 59.99803 * 23 22 21 25 25 F 1.39898 * 109.47338 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.47002 * 60.00189 * 24 23 22 27 27 C 1.53002 * 109.47397 * 300.00371 * 24 23 22 28 28 C 1.52999 * 109.47512 * 180.02562 * 21 19 18 29 29 H 1.08999 * 109.47046 * 300.02809 * 1 2 3 30 30 H 1.09008 * 109.47067 * 60.02262 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.49796 * 61.43268 * 4 2 1 33 33 H 1.08993 * 109.52862 * 301.35148 * 4 2 1 34 34 H 1.08998 * 109.58561 * 185.58027 * 5 4 2 35 35 H 1.08992 * 109.70278 * 65.22534 * 5 4 2 36 36 H 0.97002 * 120.00421 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.58271 * 65.92842 * 15 6 5 38 38 H 1.09001 * 109.58377 * 186.35089 * 15 6 5 39 39 H 0.96998 * 119.99805 * 24.99810 * 18 16 2 40 40 H 1.09000 * 109.47559 * 59.99580 * 21 19 18 41 41 H 1.09005 * 109.47487 * 300.00078 * 22 21 19 42 42 H 1.09007 * 109.47560 * 59.99814 * 22 21 19 43 43 H 1.09005 * 109.46874 * 300.00560 * 23 22 21 44 44 H 1.08997 * 109.48043 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.47076 * 300.00266 * 27 24 23 46 46 H 1.08995 * 109.47257 * 179.97438 * 27 24 23 47 47 H 1.09006 * 109.47052 * 299.99843 * 28 21 19 48 48 H 1.08996 * 109.47069 * 59.99670 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5714 -0.6887 1.2641 6 7 4.0678 -1.2488 -0.0003 7 6 4.9763 -2.2733 -0.0004 8 1 5.0013 -2.9729 -0.8229 9 6 5.8616 -2.4161 1.0592 10 7 6.0662 -1.4124 1.8857 11 14 6.7625 -4.0329 1.3122 12 1 6.3606 -4.9944 0.2543 13 1 8.2273 -3.8001 1.2383 14 1 6.4164 -4.5891 2.6448 15 6 3.5755 -0.6846 -1.2644 16 6 2.0398 -0.7205 -1.2502 17 1 1.6977 -1.7554 -1.2386 18 7 1.5249 -0.0487 -2.4460 19 6 1.3964 -0.7323 -3.6003 20 8 1.7075 -1.9036 -3.6493 21 6 0.8673 -0.0412 -4.8305 22 6 -0.5425 0.4846 -4.5534 23 6 -1.0796 1.1869 -5.8021 24 6 -1.1249 0.1944 -6.9657 25 9 -1.6155 0.8367 -8.1076 26 9 -1.9645 -0.8745 -6.6344 27 6 0.2849 -0.3314 -7.2428 28 6 0.8213 -1.0343 -5.9935 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5135 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6978 -1.7558 1.2381 33 1 1.6573 -0.2215 2.1400 34 1 3.9417 -1.2848 2.0981 35 1 3.9164 0.3399 1.3685 36 1 6.6846 -1.5123 2.6264 37 1 3.9189 0.3452 -1.3631 38 1 3.9486 -1.2779 -2.0992 39 1 1.2764 0.8881 -2.4069 40 1 1.5213 0.7916 -5.0891 41 1 -1.1967 -0.3482 -4.2949 42 1 -0.5103 1.1920 -3.7247 43 1 -0.4254 2.0197 -6.0603 44 1 -2.0838 1.5619 -5.6047 45 1 0.9391 0.5014 -7.5009 46 1 0.2525 -1.0387 -8.0714 47 1 1.8255 -1.4093 -6.1911 48 1 0.1670 -1.8667 -5.7347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968354050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:09 Heat of formation + Delta-G solvation = -164.204881 kcal Electronic energy + Delta-G solvation = -29828.420526 eV Core-core repulsion = 25552.331861 eV Total energy + Delta-G solvation = -4276.088665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.93079 -47.93707 -41.32905 -39.49112 -37.87590 -36.17616 -34.48224 -33.03047 -32.13259 -31.60869 -30.13491 -28.85327 -25.96491 -24.92592 -24.11974 -23.42082 -22.67424 -21.58553 -21.18679 -20.52795 -18.73336 -18.42981 -18.02767 -17.82336 -17.26714 -17.09934 -16.66957 -16.07419 -15.66605 -15.36761 -15.34656 -15.11277 -14.99660 -14.68153 -14.47429 -14.39936 -14.21641 -14.15938 -13.94518 -13.59794 -13.36645 -13.19922 -13.17407 -13.10934 -12.78295 -12.74641 -12.65234 -12.58182 -12.29336 -12.18476 -12.02068 -11.95822 -11.70392 -11.64366 -11.40530 -11.24101 -11.09574 -10.67710 -10.60716 -10.04237 -8.69189 -7.91928 -5.37966 1.41802 1.43794 1.55128 1.70651 2.18625 2.49573 2.83938 3.14692 3.22042 3.32687 3.44173 3.71629 3.76145 3.78901 3.88338 3.99499 4.04685 4.09661 4.14036 4.32990 4.34667 4.47180 4.54532 4.63787 4.68424 4.70130 4.76527 4.83117 4.90224 4.94535 4.97145 4.98706 5.00646 5.04668 5.12646 5.18387 5.22077 5.26246 5.30504 5.47149 5.48303 5.61254 5.62144 5.77512 6.35875 6.67382 7.11754 7.38405 7.81832 8.31361 9.13420 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002774 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.649141 B =10090.116388 C =10945.632789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.173 3.827 6 N -0.608 5.608 7 C -0.267 4.267 8 H 0.051 0.949 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.284 1.284 15 C 0.145 3.855 16 C 0.150 3.850 17 H 0.051 0.949 18 N -0.704 5.704 19 C 0.511 3.489 20 O -0.589 6.589 21 C -0.101 4.101 22 C -0.106 4.106 23 C -0.148 4.148 24 C 0.275 3.725 25 F -0.212 7.212 26 F -0.217 7.217 27 C -0.151 4.151 28 C -0.099 4.099 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.006 0.994 36 H 0.252 0.748 37 H 0.023 0.977 38 H 0.028 0.972 39 H 0.416 0.584 40 H 0.136 0.864 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.103 11.425 -14.252 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.332 5.332 7 C -0.397 4.397 8 H 0.069 0.931 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.791 3.209 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.210 1.210 15 C 0.018 3.982 16 C 0.043 3.957 17 H 0.069 0.931 18 N -0.355 5.355 19 C 0.299 3.701 20 O -0.468 6.468 21 C -0.122 4.122 22 C -0.144 4.144 23 C -0.185 4.185 24 C 0.239 3.761 25 F -0.193 7.193 26 F -0.198 7.198 27 C -0.188 4.188 28 C -0.137 4.137 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.253 0.747 40 H 0.153 0.847 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.141 0.859 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.816 10.588 -14.177 24.410 hybrid contribution 0.788 -1.028 0.256 1.321 sum -16.027 9.560 -13.921 23.282 Atomic orbital electron populations 1.21774 0.92857 1.01550 1.03022 1.21226 0.96967 0.99374 0.92567 0.89907 1.22080 0.96634 0.99719 0.97883 1.20698 0.90695 0.95400 0.88469 1.44234 1.48339 1.39603 1.00986 1.19400 1.10213 1.03472 1.06621 0.93118 1.25711 0.98132 1.00393 0.99657 1.70160 1.38229 1.30468 1.18528 0.85275 0.77903 0.80051 0.77639 1.19970 1.21373 1.21025 1.21322 0.93074 0.95676 0.88171 1.21276 0.93451 0.96163 0.84783 0.93073 1.45881 1.65306 1.15057 1.09302 1.21236 0.76869 0.86642 0.85394 1.90733 1.51764 1.18996 1.85352 1.21464 0.99493 0.99896 0.91337 1.21513 0.93125 1.01193 0.98545 1.22528 1.05954 0.97927 0.92137 1.21578 0.87855 0.82692 0.83976 1.92989 1.89841 1.82384 1.54051 1.92976 1.74781 1.59235 1.92837 1.22538 0.93186 1.03684 0.99435 1.21256 1.02376 0.97447 0.92620 0.91025 0.90724 0.94177 0.93867 0.89989 0.92952 0.97617 0.93847 0.95891 0.95332 0.74679 0.84673 0.92074 0.87085 0.85607 0.88107 0.85937 0.89342 0.90707 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.02 71.98 0.65 -2.17 16 2 C -0.08 -2.34 2.27 -10.77 -0.02 -2.36 16 3 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 4 C -0.12 -4.40 5.36 30.67 0.16 -4.24 16 5 C 0.17 8.21 5.30 86.36 0.46 8.67 16 6 N -0.61 -31.60 2.99 -698.26 -2.09 -33.69 16 7 C -0.27 -15.55 9.58 84.03 0.81 -14.75 16 8 H 0.05 3.04 7.88 -2.91 -0.02 3.01 16 9 C -0.04 -2.47 4.92 84.86 0.42 -2.06 16 10 N -0.93 -55.14 11.20 21.65 0.24 -54.89 16 11 Si 0.96 46.44 29.59 68.60 2.03 48.47 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 15 C 0.14 6.29 6.12 86.51 0.53 6.82 16 16 C 0.15 5.08 2.08 45.21 0.09 5.17 16 17 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 18 N -0.70 -16.84 4.26 -441.48 -1.88 -18.72 16 19 C 0.51 13.54 7.12 87.66 0.62 14.16 16 20 O -0.59 -22.69 15.64 -3.04 -0.05 -22.74 16 21 C -0.10 -1.59 2.53 -11.54 -0.03 -1.61 16 22 C -0.11 -1.18 4.98 30.59 0.15 -1.03 16 23 C -0.15 -1.30 5.45 30.59 0.17 -1.14 16 24 C 0.27 4.11 2.10 30.59 0.06 4.17 16 25 F -0.21 -3.67 17.06 44.97 0.77 -2.90 16 26 F -0.22 -4.58 16.02 44.97 0.72 -3.86 16 27 C -0.15 -1.99 5.46 30.61 0.17 -1.82 16 28 C -0.10 -1.83 4.37 30.61 0.13 -1.70 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.17 7.36 -2.38 -0.02 1.15 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 35 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.03 1.37 7.93 -2.39 -0.02 1.35 16 39 H 0.42 6.32 7.72 -92.71 -0.72 5.61 16 40 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 0.96 7.80 -2.38 -0.02 0.94 16 42 H 0.11 0.66 7.56 -2.38 -0.02 0.64 16 43 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.57 8.10 -2.38 -0.02 1.55 16 48 H 0.05 1.31 7.76 -2.39 -0.02 1.29 16 Total: -1.00 -76.17 376.51 4.35 -71.82 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.23 Total: 10.38 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.37 Total: 6.13 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.72 Total: -107.30 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 1.49 Total: -6.76 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.17 4.35 -71.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968354050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.385 kcal (2) G-P(sol) polarization free energy of solvation -76.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds