Wall clock time and date at job start Tue Mar 31 2020 17:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.44784 * 2 1 4 4 C 1.53039 * 109.46293 * 240.03398 * 2 1 3 5 5 C 1.53191 * 109.31325 * 178.61003 * 4 2 1 6 6 N 1.46921 * 108.77364 * 54.63605 * 5 4 2 7 7 C 1.36940 * 120.62845 * 126.40809 * 6 5 4 8 8 H 1.07998 * 119.99821 * 207.65470 * 7 6 5 9 9 C 1.38809 * 120.00085 * 27.66292 * 7 6 5 10 10 N 1.31622 * 119.99899 * 17.37359 * 9 7 6 11 11 Si 1.86801 * 120.00113 * 197.37118 * 9 7 6 12 12 H 1.48499 * 109.47197 * 0.02562 * 11 9 7 13 13 H 1.48510 * 109.46795 * 119.99977 * 11 9 7 14 14 H 1.48492 * 109.47219 * 239.99911 * 11 9 7 15 15 C 1.46928 * 118.74201 * 306.39203 * 6 5 4 16 16 C 1.53044 * 109.46111 * 119.96440 * 2 1 3 17 17 H 1.08999 * 109.51961 * 61.42214 * 16 2 1 18 18 N 1.46501 * 109.49377 * 301.34070 * 16 2 1 19 19 C 1.34773 * 119.99640 * 154.88777 * 18 16 2 20 20 O 1.21281 * 120.00077 * 0.27260 * 19 18 16 21 21 C 1.50697 * 120.00098 * 180.27316 * 19 18 16 22 22 C 1.53002 * 109.47239 * 299.99733 * 21 19 18 23 23 C 1.52993 * 109.47171 * 179.97438 * 22 21 19 24 24 C 1.53002 * 109.47313 * 60.00443 * 23 22 21 25 25 F 1.39898 * 109.47442 * 179.97438 * 24 23 22 26 26 F 1.39900 * 109.47203 * 59.99633 * 24 23 22 27 27 C 1.52995 * 109.46807 * 300.00114 * 24 23 22 28 28 C 1.52993 * 109.47552 * 59.99595 * 27 24 23 29 29 H 1.08989 * 109.46973 * 300.03280 * 1 2 3 30 30 H 1.09000 * 109.46921 * 60.04037 * 1 2 3 31 31 H 1.09001 * 109.46512 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.49581 * 58.66251 * 4 2 1 33 33 H 1.08993 * 109.52527 * 298.58691 * 4 2 1 34 34 H 1.09003 * 109.58803 * 294.84844 * 5 4 2 35 35 H 1.08995 * 109.58297 * 174.42325 * 5 4 2 36 36 H 0.97000 * 119.99998 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.58370 * 293.81880 * 15 6 5 38 38 H 1.08998 * 109.58788 * 173.39256 * 15 6 5 39 39 H 0.96993 * 120.00483 * 335.15561 * 18 16 2 40 40 H 1.08998 * 109.47505 * 60.00121 * 21 19 18 41 41 H 1.08997 * 109.47170 * 300.00027 * 22 21 19 42 42 H 1.08998 * 109.46936 * 59.99790 * 22 21 19 43 43 H 1.08997 * 109.47296 * 300.00195 * 23 22 21 44 44 H 1.09009 * 109.47159 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.47125 * 299.99189 * 27 24 23 46 46 H 1.08998 * 109.47103 * 179.97438 * 27 24 23 47 47 H 1.09002 * 109.47583 * 179.97438 * 28 27 24 48 48 H 1.09001 * 109.47180 * 60.00566 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7207 -1.2500 5 6 3.5715 -0.6884 -1.2642 6 7 4.0680 -1.2486 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0099 -2.9653 0.8284 9 6 5.8547 -2.4221 -1.0646 10 7 6.0605 -1.4202 -1.8930 11 14 6.7445 -4.0443 -1.3216 12 1 6.3420 -5.0030 -0.2614 13 1 6.3872 -4.5995 -2.6519 14 1 8.2110 -3.8203 -1.2564 15 6 3.5714 -0.6884 1.2643 16 6 2.0400 -0.7207 1.2501 17 1 1.6979 -1.7556 1.2389 18 7 1.5256 -0.0486 2.4459 19 6 1.3950 -0.7327 3.5997 20 8 1.7079 -1.9034 3.6494 21 6 0.8601 -0.0431 4.8282 22 6 1.7740 1.1280 5.1944 23 6 1.2306 1.8286 6.4413 24 6 1.1833 0.8357 7.6044 25 9 0.6870 1.4764 8.7447 26 9 2.4727 0.3580 7.8625 27 6 0.2695 -0.3354 7.2382 28 6 0.8128 -1.0360 5.9914 29 1 -0.3633 0.5143 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3632 -1.0277 0.0005 32 1 1.6573 -0.2206 -2.1399 33 1 1.6979 -1.7555 -1.2389 34 1 3.9144 0.3411 -1.3673 35 1 3.9418 -1.2843 -2.0984 36 1 6.6745 -1.5241 -2.6368 37 1 3.9143 0.3411 1.3674 38 1 3.9417 -1.2844 2.0984 39 1 1.2753 0.8876 2.4063 40 1 -0.1446 0.3290 4.6277 41 1 2.7787 0.7559 5.3951 42 1 1.8074 1.8356 4.3660 43 1 0.2261 2.2007 6.2402 44 1 1.8816 2.6632 6.7019 45 1 -0.7352 0.0367 7.0372 46 1 0.2361 -1.0430 8.0666 47 1 0.1619 -1.8706 5.7308 48 1 1.8173 -1.4083 6.1924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968354051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:14 Heat of formation + Delta-G solvation = -144.201953 kcal Electronic energy + Delta-G solvation = -29875.386857 eV Core-core repulsion = 25600.165585 eV Total energy + Delta-G solvation = -4275.221273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.19126 -47.17454 -40.19504 -38.17164 -36.87621 -34.50694 -33.07392 -31.46079 -31.13149 -30.67130 -28.75107 -27.27210 -24.28586 -23.75554 -23.46638 -22.10774 -21.08798 -20.66318 -19.92446 -19.29292 -17.68514 -17.12745 -16.99204 -16.78210 -16.50674 -15.70132 -15.07676 -14.71999 -14.36981 -14.34066 -14.07044 -13.76288 -13.67180 -13.54803 -13.49803 -13.36266 -13.19624 -13.12077 -12.76144 -12.56091 -12.39573 -12.08367 -12.00524 -11.83306 -11.63328 -11.56567 -11.50611 -11.03929 -11.00715 -10.80579 -10.66271 -10.45285 -10.27388 -10.14703 -9.91171 -9.83777 -9.63591 -9.40225 -8.80370 -8.39521 -6.67145 -5.77967 -3.19805 2.78746 3.29711 3.39588 3.47430 3.47646 3.51885 3.75940 4.03851 4.06616 4.48350 4.52711 4.59264 4.72692 4.79853 4.89308 5.01737 5.10242 5.24662 5.26587 5.31850 5.37295 5.41497 5.43846 5.46295 5.58794 5.64880 5.68283 5.85876 5.87680 5.94254 6.05014 6.05569 6.16154 6.21414 6.26638 6.54998 6.62028 6.67812 6.72342 6.82867 7.00168 7.35161 7.64472 7.73339 7.84343 8.41874 8.48335 9.22866 9.85207 10.40489 11.30752 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.002973 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.345230 B = 9416.641106 C =10356.646845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.588 5.588 7 C -0.249 4.249 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.143 3.857 16 C 0.132 3.868 17 H 0.085 0.915 18 N -0.719 5.719 19 C 0.514 3.486 20 O -0.533 6.533 21 C -0.111 4.111 22 C -0.112 4.112 23 C -0.155 4.155 24 C 0.286 3.714 25 F -0.205 7.205 26 F -0.197 7.197 27 C -0.157 4.157 28 C -0.100 4.100 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.018 0.982 35 H 0.089 0.911 36 H 0.253 0.747 37 H 0.016 0.984 38 H 0.057 0.943 39 H 0.393 0.607 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 8.857 13.600 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.310 5.310 7 C -0.379 4.379 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.015 3.985 16 C 0.027 3.973 17 H 0.104 0.896 18 N -0.370 5.370 19 C 0.299 3.701 20 O -0.409 6.409 21 C -0.132 4.132 22 C -0.150 4.150 23 C -0.193 4.193 24 C 0.249 3.751 25 F -0.186 7.186 26 F -0.178 7.178 27 C -0.195 4.195 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.227 0.773 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.243 7.985 13.523 21.885 hybrid contribution 0.428 -0.168 -0.064 0.464 sum -14.815 7.817 13.458 21.488 Atomic orbital electron populations 1.21849 0.96061 1.01523 1.00652 1.21305 0.94496 0.99635 0.95571 0.91540 1.22247 1.00691 0.99542 0.94857 1.20842 0.87304 0.97285 0.90407 1.44007 1.48077 1.39820 0.99139 1.19267 1.09648 1.02813 1.06156 0.91527 1.25014 0.97231 0.97525 0.99863 1.70048 1.37824 1.28983 1.18008 0.86227 0.79098 0.83749 0.77795 1.20148 1.21547 1.21731 1.21179 0.90135 0.96548 0.90661 1.21762 0.96691 0.96911 0.81954 0.89641 1.46135 1.66021 1.14133 1.10697 1.20345 0.78315 0.87178 0.84219 1.90745 1.49304 1.16330 1.84488 1.21422 1.00887 0.96753 0.94156 1.21524 1.00108 0.96393 0.96995 1.22506 1.04819 0.98132 0.93845 1.21161 0.78805 0.92149 0.82937 1.93002 1.87694 1.83454 1.54454 1.93019 1.40548 1.89359 1.94845 1.22550 0.99510 0.96730 1.00705 1.21325 1.03919 0.97451 0.91125 0.93457 0.93005 0.92963 0.92765 0.92442 0.96372 0.89246 0.93733 0.96595 0.92417 0.77330 0.88320 0.89880 0.89745 0.88583 0.89066 0.88770 0.89164 0.89588 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.02 37.16 0.34 -1.42 16 2 C -0.09 -1.39 2.27 -90.57 -0.21 -1.60 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -2.43 5.36 -26.61 -0.14 -2.57 16 5 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 6 N -0.59 -14.80 2.99 -172.33 -0.52 -15.31 16 7 C -0.25 -7.00 9.59 -15.06 -0.14 -7.15 16 8 H 0.07 1.90 7.89 -52.49 -0.41 1.48 16 9 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 11 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 15 C 0.14 3.04 6.09 -3.71 -0.02 3.02 16 16 C 0.13 2.26 2.06 -67.81 -0.14 2.12 16 17 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 18 N -0.72 -9.33 4.26 -53.69 -0.23 -9.55 16 19 C 0.51 7.04 7.12 -10.99 -0.08 6.96 16 20 O -0.53 -9.89 15.65 5.56 0.09 -9.80 16 21 C -0.11 -1.01 2.53 -91.77 -0.23 -1.24 16 22 C -0.11 -0.91 4.98 -26.73 -0.13 -1.04 16 23 C -0.15 -1.07 5.45 -26.73 -0.15 -1.21 16 24 C 0.29 2.56 2.10 -26.73 -0.06 2.50 16 25 F -0.21 -2.07 17.06 2.25 0.04 -2.03 16 26 F -0.20 -2.29 16.02 2.25 0.04 -2.25 16 27 C -0.16 -1.19 5.45 -26.74 -0.15 -1.33 16 28 C -0.10 -0.96 4.37 -26.73 -0.12 -1.08 16 29 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 36 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 39 H 0.39 3.82 7.72 -40.82 -0.32 3.50 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.85 7.80 -51.93 -0.41 0.44 16 42 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 48 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -32.44 376.45 -8.71 -41.15 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.06 Total: 0.86 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.33 Total: -0.19 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.12 Total: -50.47 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.07 Total: -4.28 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.44 -8.71 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968354051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.048 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds