Wall clock time and date at job start Tue Mar 31 2020 17:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.44784 * 2 1 4 4 C 1.53039 * 109.46293 * 240.03398 * 2 1 3 5 5 C 1.53191 * 109.31325 * 178.61003 * 4 2 1 6 6 N 1.46921 * 108.77364 * 54.63605 * 5 4 2 7 7 C 1.36940 * 120.62845 * 126.40809 * 6 5 4 8 8 H 1.07998 * 119.99821 * 207.65470 * 7 6 5 9 9 C 1.38809 * 120.00085 * 27.66292 * 7 6 5 10 10 N 1.31622 * 119.99899 * 17.37359 * 9 7 6 11 11 Si 1.86801 * 120.00113 * 197.37118 * 9 7 6 12 12 H 1.48499 * 109.47197 * 0.02562 * 11 9 7 13 13 H 1.48510 * 109.46795 * 119.99977 * 11 9 7 14 14 H 1.48492 * 109.47219 * 239.99911 * 11 9 7 15 15 C 1.46928 * 118.74201 * 306.39203 * 6 5 4 16 16 C 1.53044 * 109.46111 * 119.96440 * 2 1 3 17 17 H 1.08999 * 109.51961 * 61.42214 * 16 2 1 18 18 N 1.46501 * 109.49377 * 301.34070 * 16 2 1 19 19 C 1.34773 * 119.99640 * 154.88777 * 18 16 2 20 20 O 1.21281 * 120.00077 * 0.27260 * 19 18 16 21 21 C 1.50697 * 120.00098 * 180.27316 * 19 18 16 22 22 C 1.53002 * 109.47239 * 299.99733 * 21 19 18 23 23 C 1.52993 * 109.47171 * 179.97438 * 22 21 19 24 24 C 1.53002 * 109.47313 * 60.00443 * 23 22 21 25 25 F 1.39898 * 109.47442 * 179.97438 * 24 23 22 26 26 F 1.39900 * 109.47203 * 59.99633 * 24 23 22 27 27 C 1.52995 * 109.46807 * 300.00114 * 24 23 22 28 28 C 1.52993 * 109.47552 * 59.99595 * 27 24 23 29 29 H 1.08989 * 109.46973 * 300.03280 * 1 2 3 30 30 H 1.09000 * 109.46921 * 60.04037 * 1 2 3 31 31 H 1.09001 * 109.46512 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.49581 * 58.66251 * 4 2 1 33 33 H 1.08993 * 109.52527 * 298.58691 * 4 2 1 34 34 H 1.09003 * 109.58803 * 294.84844 * 5 4 2 35 35 H 1.08995 * 109.58297 * 174.42325 * 5 4 2 36 36 H 0.97000 * 119.99998 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.58370 * 293.81880 * 15 6 5 38 38 H 1.08998 * 109.58788 * 173.39256 * 15 6 5 39 39 H 0.96993 * 120.00483 * 335.15561 * 18 16 2 40 40 H 1.08998 * 109.47505 * 60.00121 * 21 19 18 41 41 H 1.08997 * 109.47170 * 300.00027 * 22 21 19 42 42 H 1.08998 * 109.46936 * 59.99790 * 22 21 19 43 43 H 1.08997 * 109.47296 * 300.00195 * 23 22 21 44 44 H 1.09009 * 109.47159 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.47125 * 299.99189 * 27 24 23 46 46 H 1.08998 * 109.47103 * 179.97438 * 27 24 23 47 47 H 1.09002 * 109.47583 * 179.97438 * 28 27 24 48 48 H 1.09001 * 109.47180 * 60.00566 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7207 -1.2500 5 6 3.5715 -0.6884 -1.2642 6 7 4.0680 -1.2486 0.0000 7 6 4.9765 -2.2732 0.0000 8 1 5.0099 -2.9653 0.8284 9 6 5.8547 -2.4221 -1.0646 10 7 6.0605 -1.4202 -1.8930 11 14 6.7445 -4.0443 -1.3216 12 1 6.3420 -5.0030 -0.2614 13 1 6.3872 -4.5995 -2.6519 14 1 8.2110 -3.8203 -1.2564 15 6 3.5714 -0.6884 1.2643 16 6 2.0400 -0.7207 1.2501 17 1 1.6979 -1.7556 1.2389 18 7 1.5256 -0.0486 2.4459 19 6 1.3950 -0.7327 3.5997 20 8 1.7079 -1.9034 3.6494 21 6 0.8601 -0.0431 4.8282 22 6 1.7740 1.1280 5.1944 23 6 1.2306 1.8286 6.4413 24 6 1.1833 0.8357 7.6044 25 9 0.6870 1.4764 8.7447 26 9 2.4727 0.3580 7.8625 27 6 0.2695 -0.3354 7.2382 28 6 0.8128 -1.0360 5.9914 29 1 -0.3633 0.5143 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3632 -1.0277 0.0005 32 1 1.6573 -0.2206 -2.1399 33 1 1.6979 -1.7555 -1.2389 34 1 3.9144 0.3411 -1.3673 35 1 3.9418 -1.2843 -2.0984 36 1 6.6745 -1.5241 -2.6368 37 1 3.9143 0.3411 1.3674 38 1 3.9417 -1.2844 2.0984 39 1 1.2753 0.8876 2.4063 40 1 -0.1446 0.3290 4.6277 41 1 2.7787 0.7559 5.3951 42 1 1.8074 1.8356 4.3660 43 1 0.2261 2.2007 6.2402 44 1 1.8816 2.6632 6.7019 45 1 -0.7352 0.0367 7.0372 46 1 0.2361 -1.0430 8.0666 47 1 0.1619 -1.8706 5.7308 48 1 1.8173 -1.4083 6.1924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968354051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:13 Heat of formation + Delta-G solvation = -164.035746 kcal Electronic energy + Delta-G solvation = -29876.246915 eV Core-core repulsion = 25600.165585 eV Total energy + Delta-G solvation = -4276.081331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.93609 -47.94160 -41.33638 -39.50639 -37.88266 -36.17981 -34.48746 -33.03845 -32.13647 -31.61689 -30.13913 -28.87691 -25.96888 -24.90556 -24.14345 -23.41811 -22.68479 -21.61067 -21.14159 -20.55205 -18.74865 -18.42638 -18.02587 -17.84465 -17.23963 -17.10536 -16.69137 -16.08630 -15.68740 -15.36757 -15.29559 -15.10586 -15.06237 -14.64150 -14.54610 -14.34588 -14.23411 -14.16784 -13.96239 -13.58687 -13.35873 -13.25299 -13.15348 -13.10839 -12.77326 -12.75095 -12.64341 -12.60157 -12.29477 -12.18586 -12.01731 -11.96071 -11.71269 -11.64610 -11.40102 -11.23908 -11.10088 -10.67393 -10.61278 -10.05077 -8.70655 -7.92627 -5.37698 1.41432 1.43252 1.54790 1.69646 2.19271 2.49202 2.83870 3.14685 3.21216 3.32366 3.44113 3.70876 3.75971 3.78612 3.87827 3.99471 4.05002 4.09410 4.14546 4.32584 4.35167 4.46152 4.54822 4.62397 4.68149 4.69767 4.76889 4.82985 4.90036 4.94180 4.97027 4.98211 5.00798 5.05007 5.12691 5.17313 5.22358 5.26097 5.31527 5.47553 5.48051 5.60877 5.61876 5.77159 6.34957 6.67220 7.11207 7.38275 7.81328 8.30414 9.12913 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.002973 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.345230 B = 9416.641106 C =10356.646845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.172 3.828 6 N -0.608 5.608 7 C -0.267 4.267 8 H 0.051 0.949 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.287 1.287 15 C 0.145 3.855 16 C 0.150 3.850 17 H 0.053 0.947 18 N -0.704 5.704 19 C 0.510 3.490 20 O -0.589 6.589 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.147 4.147 24 C 0.272 3.728 25 F -0.211 7.211 26 F -0.220 7.220 27 C -0.148 4.148 28 C -0.099 4.099 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.005 0.995 35 H 0.053 0.947 36 H 0.252 0.748 37 H 0.021 0.979 38 H 0.025 0.975 39 H 0.416 0.584 40 H 0.145 0.855 41 H 0.051 0.949 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.606 11.012 13.899 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.332 5.332 7 C -0.398 4.398 8 H 0.068 0.932 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.791 3.209 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.214 1.214 15 C 0.018 3.982 16 C 0.044 3.956 17 H 0.071 0.929 18 N -0.356 5.356 19 C 0.298 3.702 20 O -0.468 6.468 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.184 4.184 24 C 0.237 3.763 25 F -0.192 7.192 26 F -0.201 7.201 27 C -0.186 4.186 28 C -0.138 4.138 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.253 0.747 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.150 0.850 44 H 0.114 0.886 45 H 0.146 0.854 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.252 10.195 13.842 25.073 hybrid contribution 1.418 -0.848 -0.098 1.655 sum -16.833 9.347 13.744 23.656 Atomic orbital electron populations 1.21768 0.92687 1.01645 1.03036 1.21232 0.97109 0.99303 0.92508 0.90024 1.22084 0.96561 0.99786 0.97901 1.20710 0.90791 0.95342 0.88443 1.44231 1.48206 1.39746 1.00968 1.19404 1.10581 1.03721 1.06071 0.93168 1.25692 0.98115 1.00450 0.99632 1.70168 1.38415 1.30467 1.18309 0.85275 0.77854 0.80061 0.77679 1.20021 1.20888 1.21411 1.21227 0.93302 0.95587 0.88127 1.21184 0.93332 0.96277 0.84848 0.92907 1.45880 1.65289 1.15064 1.09323 1.21259 0.77020 0.86607 0.85309 1.90733 1.51591 1.19167 1.85348 1.21450 1.03018 0.96337 0.91057 1.21520 0.98277 0.96356 0.98644 1.22521 1.06923 0.97242 0.91740 1.21638 0.77992 0.93295 0.83424 1.92987 1.87653 1.83564 1.55000 1.92979 1.42327 1.89764 1.95048 1.22523 1.00585 0.96142 0.99342 1.21258 1.02011 0.97907 0.92582 0.90685 0.91046 0.94001 0.89943 0.93753 0.97716 0.92839 0.93838 0.96112 0.95599 0.74670 0.83779 0.92980 0.87366 0.85046 0.88594 0.85404 0.89314 0.90012 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.02 71.98 0.65 -2.08 16 2 C -0.08 -2.33 2.27 -10.76 -0.02 -2.36 16 3 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.12 -4.40 5.36 30.67 0.16 -4.23 16 5 C 0.17 8.23 5.31 86.36 0.46 8.69 16 6 N -0.61 -31.86 2.99 -699.12 -2.09 -33.95 16 7 C -0.27 -15.74 9.59 84.03 0.81 -14.93 16 8 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 9 C -0.04 -2.49 4.91 84.86 0.42 -2.07 16 10 N -0.93 -55.40 11.19 21.65 0.24 -55.16 16 11 Si 0.96 46.74 29.59 68.60 2.03 48.77 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 14 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 15 C 0.14 6.39 6.09 86.36 0.53 6.92 16 16 C 0.15 5.09 2.06 45.07 0.09 5.19 16 17 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 18 N -0.70 -16.85 4.26 -442.17 -1.88 -18.74 16 19 C 0.51 13.50 7.12 87.66 0.62 14.12 16 20 O -0.59 -22.68 15.65 -3.03 -0.05 -22.73 16 21 C -0.10 -1.52 2.53 -11.54 -0.03 -1.55 16 22 C -0.11 -1.49 4.98 30.59 0.15 -1.33 16 23 C -0.15 -1.50 5.45 30.59 0.17 -1.33 16 24 C 0.27 4.36 2.10 30.59 0.06 4.42 16 25 F -0.21 -3.80 17.06 44.97 0.77 -3.03 16 26 F -0.22 -5.16 16.02 44.97 0.72 -4.44 16 27 C -0.15 -1.90 5.45 30.59 0.17 -1.74 16 28 C -0.10 -1.82 4.37 30.59 0.13 -1.69 16 29 H 0.07 1.14 7.35 -2.39 -0.02 1.12 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.05 2.92 6.04 -2.39 -0.01 2.91 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.03 1.27 7.93 -2.39 -0.02 1.25 16 39 H 0.42 6.33 7.72 -92.71 -0.72 5.62 16 40 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.04 7.80 -2.39 -0.02 1.03 16 42 H 0.11 0.96 7.56 -2.39 -0.02 0.95 16 43 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 48 H 0.05 1.22 7.76 -2.39 -0.02 1.20 16 Total: -1.00 -77.41 376.45 4.34 -73.07 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.23 Total: 10.18 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.37 Total: 6.03 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.74 Total: -107.86 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 1.49 Total: -7.47 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -77.41 4.34 -73.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968354051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.963 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds