Wall clock time and date at job start Tue Mar 31 2020 17:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.44725 * 2 1 4 4 C 1.53041 * 109.46018 * 119.96742 * 2 1 3 5 5 C 1.53191 * 109.31100 * 181.38846 * 4 2 1 6 6 N 1.46921 * 108.77471 * 305.36144 * 5 4 2 7 7 C 1.36940 * 120.63206 * 233.63359 * 6 5 4 8 8 H 1.07991 * 120.00045 * 27.72035 * 7 6 5 9 9 C 1.38818 * 119.99716 * 207.72299 * 7 6 5 10 10 N 1.31614 * 119.99930 * 17.27449 * 9 7 6 11 11 Si 1.86800 * 119.99541 * 197.26991 * 9 7 6 12 12 H 1.48494 * 109.47194 * 60.00067 * 11 9 7 13 13 H 1.48497 * 109.46931 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47108 * 300.00101 * 11 9 7 15 15 C 1.46928 * 118.73770 * 53.61001 * 6 5 4 16 16 C 1.53041 * 109.45992 * 240.03274 * 2 1 3 17 17 H 1.09007 * 109.49512 * 58.62584 * 16 2 1 18 18 N 1.46500 * 109.49805 * 298.56734 * 16 2 1 19 19 C 1.34776 * 119.99745 * 155.00061 * 18 16 2 20 20 O 1.21275 * 120.00574 * 359.97438 * 19 18 16 21 21 C 1.50705 * 119.99622 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.47395 * 300.00163 * 21 19 18 23 23 C 1.52996 * 109.47140 * 179.97438 * 22 21 19 24 24 C 1.53002 * 109.47013 * 60.00004 * 23 22 21 25 25 F 1.39904 * 109.47263 * 180.02562 * 24 23 22 26 26 F 1.39893 * 109.47074 * 59.99883 * 24 23 22 27 27 C 1.53001 * 109.47164 * 299.99981 * 24 23 22 28 28 C 1.52996 * 109.47321 * 59.99750 * 27 24 23 29 29 H 1.09003 * 109.46685 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46955 * 299.96229 * 1 2 3 31 31 H 1.08990 * 109.47149 * 59.96842 * 1 2 3 32 32 H 1.09005 * 109.49605 * 301.33255 * 4 2 1 33 33 H 1.08995 * 109.49955 * 61.43519 * 4 2 1 34 34 H 1.09000 * 109.58552 * 65.14853 * 5 4 2 35 35 H 1.08995 * 109.58632 * 185.43363 * 5 4 2 36 36 H 0.97007 * 119.99655 * 179.97438 * 10 9 7 37 37 H 1.09006 * 109.58469 * 186.60562 * 15 6 5 38 38 H 1.08999 * 109.58677 * 66.18245 * 15 6 5 39 39 H 0.96996 * 120.00144 * 334.99691 * 18 16 2 40 40 H 1.09004 * 109.46982 * 60.00217 * 21 19 18 41 41 H 1.08995 * 109.46998 * 300.00186 * 22 21 19 42 42 H 1.09004 * 109.46914 * 60.00114 * 22 21 19 43 43 H 1.09004 * 109.47212 * 300.00038 * 23 22 21 44 44 H 1.08993 * 109.47346 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47099 * 299.99989 * 27 24 23 46 46 H 1.08999 * 109.47279 * 180.02562 * 27 24 23 47 47 H 1.09002 * 109.47495 * 179.97438 * 28 27 24 48 48 H 1.09004 * 109.46839 * 60.00080 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9758 -2.2739 0.0000 8 1 5.0080 -2.9667 0.8278 9 6 5.8548 -2.4225 -1.0641 10 7 6.0604 -1.4208 -1.8927 11 14 6.7458 -4.0443 -1.3199 12 1 5.7517 -5.1288 -1.5215 13 1 7.6205 -3.9452 -2.5159 14 1 7.5741 -4.3478 -0.1252 15 6 3.5714 -0.6885 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6567 -0.2211 -2.1398 18 7 1.5802 -2.1117 -1.2342 19 6 1.4516 -2.7921 -2.3905 20 8 1.7161 -2.2529 -3.4441 21 6 0.9793 -4.2231 -2.3742 22 6 1.9512 -5.0717 -1.5520 23 6 1.4712 -6.5243 -1.5349 24 6 1.4131 -7.0591 -2.9672 25 9 0.9737 -8.3873 -2.9517 26 9 2.6875 -6.9958 -3.5407 27 6 0.4412 -6.2105 -3.7894 28 6 0.9210 -4.7578 -3.8065 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5132 0.8903 31 1 -0.3633 0.5143 -0.8896 32 1 1.6573 -0.2207 2.1399 33 1 1.6979 -1.7556 1.2383 34 1 3.9143 0.3410 1.3673 35 1 3.9417 -1.2823 2.0999 36 1 6.6749 -1.5246 -2.6361 37 1 3.9417 -1.2845 -2.0984 38 1 3.9143 0.3410 -1.3674 39 1 1.3683 -2.5429 -0.3916 40 1 -0.0139 -4.2728 -1.9276 41 1 2.9442 -5.0220 -1.9985 42 1 1.9922 -4.6910 -0.5314 43 1 0.4782 -6.5737 -1.0880 44 1 2.1639 -7.1290 -0.9495 45 1 -0.5519 -6.2598 -3.3426 46 1 0.3994 -6.5918 -4.8097 47 1 0.2289 -4.1533 -4.3926 48 1 1.9141 -4.7085 -4.2533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968354052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:17 Heat of formation + Delta-G solvation = -141.764850 kcal Electronic energy + Delta-G solvation = -31269.922791 eV Core-core repulsion = 26994.807199 eV Total energy + Delta-G solvation = -4275.115592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.93159 -46.91577 -39.93563 -38.11552 -36.56218 -34.13721 -32.85491 -31.19392 -31.00335 -30.43474 -28.85434 -27.28603 -24.20001 -23.52879 -23.15753 -22.10045 -21.09522 -20.69698 -19.67482 -18.66416 -17.43292 -16.99274 -16.82639 -16.60761 -16.23597 -15.20982 -14.90729 -14.63593 -14.23969 -14.03963 -13.87660 -13.72234 -13.59926 -13.40480 -13.24492 -13.23255 -13.06037 -12.78232 -12.64504 -12.42244 -12.20127 -11.94148 -11.71068 -11.57905 -11.54936 -11.36419 -11.25503 -11.08259 -10.91115 -10.75669 -10.59800 -10.51906 -10.24105 -10.14505 -9.92170 -9.69677 -9.50331 -9.17776 -8.44526 -8.32839 -6.64371 -5.76072 -3.18939 3.16559 3.39310 3.46079 3.48238 3.71739 3.74466 4.04212 4.32070 4.36782 4.50964 4.80091 4.93721 5.04803 5.11235 5.18382 5.20377 5.22417 5.30321 5.34439 5.42614 5.55021 5.55341 5.62328 5.70791 5.73794 5.85759 5.91523 5.98009 6.00398 6.01442 6.12696 6.26416 6.28446 6.35051 6.38882 6.43453 6.54345 6.66303 6.74143 6.88035 7.01184 7.39506 7.68328 7.81196 8.13308 8.47342 8.83054 9.22394 9.86730 10.42539 11.31704 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.005549 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.252266 B = 5044.984537 C = 6626.036456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.254 4.254 8 H 0.062 0.938 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.284 1.284 15 C 0.161 3.839 16 C 0.125 3.875 17 H 0.074 0.926 18 N -0.697 5.697 19 C 0.518 3.482 20 O -0.545 6.545 21 C -0.108 4.108 22 C -0.111 4.111 23 C -0.154 4.154 24 C 0.284 3.716 25 F -0.207 7.207 26 F -0.195 7.195 27 C -0.155 4.155 28 C -0.099 4.099 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.017 0.983 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.023 0.977 39 H 0.393 0.607 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 -5.553 2.349 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.167 4.167 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.384 4.384 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.210 1.210 15 C 0.034 3.966 16 C 0.020 3.980 17 H 0.092 0.908 18 N -0.347 5.347 19 C 0.304 3.696 20 O -0.423 6.423 21 C -0.130 4.130 22 C -0.149 4.149 23 C -0.192 4.192 24 C 0.248 3.752 25 F -0.188 7.188 26 F -0.176 7.176 27 C -0.193 4.193 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.041 0.959 39 H 0.228 0.772 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.694 -5.168 1.441 15.643 hybrid contribution 0.589 -1.194 0.228 1.351 sum -14.105 -6.362 1.669 15.563 Atomic orbital electron populations 1.21840 0.96067 1.01269 1.00897 1.21314 0.94525 0.99888 0.95600 0.90556 1.22073 0.99264 0.99333 0.96064 1.20919 0.90680 0.96510 0.90328 1.43956 1.48282 1.39549 0.99070 1.18998 1.10133 1.03103 1.06157 0.91982 1.24981 0.97118 0.97064 0.99864 1.69985 1.37325 1.28990 1.17723 0.86528 0.79574 0.84308 0.77316 1.20742 1.21658 1.21038 1.21194 0.86748 0.97681 0.90978 1.21773 0.98880 0.80686 0.96704 0.90777 1.45817 1.66789 1.13939 1.08167 1.20191 0.77787 0.87492 0.84164 1.90677 1.50611 1.70043 1.30954 1.21371 1.00501 0.93201 0.97888 1.21509 1.00075 0.91720 1.01617 1.22512 1.04650 0.98553 0.93501 1.21188 0.79773 0.78621 0.95574 1.92987 1.89619 1.38692 1.97534 1.93028 1.41905 1.96222 1.86492 1.22534 0.98938 0.96407 1.01429 1.21312 1.04075 0.92626 0.95709 0.93095 0.93226 0.93158 0.92884 0.92777 0.96553 0.92886 0.93540 0.88444 0.95910 0.77161 0.88844 0.89569 0.89496 0.88835 0.89196 0.88927 0.89393 0.89834 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 37.16 0.34 -1.40 16 2 C -0.09 -1.41 2.48 -90.57 -0.22 -1.63 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.13 -1.91 5.20 -26.61 -0.14 -2.05 16 5 C 0.14 2.73 6.51 -3.71 -0.02 2.71 16 6 N -0.59 -13.65 2.91 -172.33 -0.50 -14.15 16 7 C -0.25 -6.64 9.59 -15.06 -0.14 -6.79 16 8 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 9 C 0.01 0.25 4.91 -17.43 -0.09 0.17 16 10 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 11 Si 0.89 21.89 29.59 -169.99 -5.03 16.86 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.16 3.74 4.91 -3.71 -0.02 3.72 16 16 C 0.13 2.28 2.24 -67.81 -0.15 2.13 16 17 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 18 N -0.70 -11.47 4.14 -53.69 -0.22 -11.69 16 19 C 0.52 8.99 7.12 -10.98 -0.08 8.91 16 20 O -0.55 -11.66 15.65 5.56 0.09 -11.58 16 21 C -0.11 -1.42 2.52 -91.77 -0.23 -1.65 16 22 C -0.11 -1.52 4.98 -26.73 -0.13 -1.65 16 23 C -0.15 -1.74 5.45 -26.73 -0.15 -1.89 16 24 C 0.28 3.61 2.10 -26.73 -0.06 3.55 16 25 F -0.21 -2.71 17.06 2.25 0.04 -2.67 16 26 F -0.20 -3.13 16.02 2.25 0.04 -3.10 16 27 C -0.16 -1.65 5.45 -26.73 -0.15 -1.79 16 28 C -0.10 -1.29 4.37 -26.73 -0.12 -1.41 16 29 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 1.00 7.94 -51.93 -0.41 0.59 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.10 2.70 6.04 -51.93 -0.31 2.38 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 5.71 6.06 -40.82 -0.25 5.47 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.52 7.80 -51.93 -0.41 1.11 16 42 H 0.09 1.13 7.57 -51.93 -0.39 0.74 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 48 H 0.08 1.32 7.76 -51.93 -0.40 0.92 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -31.20 373.32 -8.62 -39.81 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.91 Total: 5.55 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.36 Total: 0.94 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.10 Total: -51.44 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.07 Total: -5.77 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.20 -8.62 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968354052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.952 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds