Wall clock time and date at job start Tue Mar 31 2020 17:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.44725 * 2 1 4 4 C 1.53041 * 109.46018 * 119.96742 * 2 1 3 5 5 C 1.53191 * 109.31100 * 181.38846 * 4 2 1 6 6 N 1.46921 * 108.77471 * 305.36144 * 5 4 2 7 7 C 1.36940 * 120.63206 * 233.63359 * 6 5 4 8 8 H 1.07991 * 120.00045 * 27.72035 * 7 6 5 9 9 C 1.38818 * 119.99716 * 207.72299 * 7 6 5 10 10 N 1.31614 * 119.99930 * 17.27449 * 9 7 6 11 11 Si 1.86800 * 119.99541 * 197.26991 * 9 7 6 12 12 H 1.48494 * 109.47194 * 60.00067 * 11 9 7 13 13 H 1.48497 * 109.46931 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47108 * 300.00101 * 11 9 7 15 15 C 1.46928 * 118.73770 * 53.61001 * 6 5 4 16 16 C 1.53041 * 109.45992 * 240.03274 * 2 1 3 17 17 H 1.09007 * 109.49512 * 58.62584 * 16 2 1 18 18 N 1.46500 * 109.49805 * 298.56734 * 16 2 1 19 19 C 1.34776 * 119.99745 * 155.00061 * 18 16 2 20 20 O 1.21275 * 120.00574 * 359.97438 * 19 18 16 21 21 C 1.50705 * 119.99622 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.47395 * 300.00163 * 21 19 18 23 23 C 1.52996 * 109.47140 * 179.97438 * 22 21 19 24 24 C 1.53002 * 109.47013 * 60.00004 * 23 22 21 25 25 F 1.39904 * 109.47263 * 180.02562 * 24 23 22 26 26 F 1.39893 * 109.47074 * 59.99883 * 24 23 22 27 27 C 1.53001 * 109.47164 * 299.99981 * 24 23 22 28 28 C 1.52996 * 109.47321 * 59.99750 * 27 24 23 29 29 H 1.09003 * 109.46685 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46955 * 299.96229 * 1 2 3 31 31 H 1.08990 * 109.47149 * 59.96842 * 1 2 3 32 32 H 1.09005 * 109.49605 * 301.33255 * 4 2 1 33 33 H 1.08995 * 109.49955 * 61.43519 * 4 2 1 34 34 H 1.09000 * 109.58552 * 65.14853 * 5 4 2 35 35 H 1.08995 * 109.58632 * 185.43363 * 5 4 2 36 36 H 0.97007 * 119.99655 * 179.97438 * 10 9 7 37 37 H 1.09006 * 109.58469 * 186.60562 * 15 6 5 38 38 H 1.08999 * 109.58677 * 66.18245 * 15 6 5 39 39 H 0.96996 * 120.00144 * 334.99691 * 18 16 2 40 40 H 1.09004 * 109.46982 * 60.00217 * 21 19 18 41 41 H 1.08995 * 109.46998 * 300.00186 * 22 21 19 42 42 H 1.09004 * 109.46914 * 60.00114 * 22 21 19 43 43 H 1.09004 * 109.47212 * 300.00038 * 23 22 21 44 44 H 1.08993 * 109.47346 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.47099 * 299.99989 * 27 24 23 46 46 H 1.08999 * 109.47279 * 180.02562 * 27 24 23 47 47 H 1.09002 * 109.47495 * 179.97438 * 28 27 24 48 48 H 1.09004 * 109.46839 * 60.00080 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9758 -2.2739 0.0000 8 1 5.0080 -2.9667 0.8278 9 6 5.8548 -2.4225 -1.0641 10 7 6.0604 -1.4208 -1.8927 11 14 6.7458 -4.0443 -1.3199 12 1 5.7517 -5.1288 -1.5215 13 1 7.6205 -3.9452 -2.5159 14 1 7.5741 -4.3478 -0.1252 15 6 3.5714 -0.6885 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6567 -0.2211 -2.1398 18 7 1.5802 -2.1117 -1.2342 19 6 1.4516 -2.7921 -2.3905 20 8 1.7161 -2.2529 -3.4441 21 6 0.9793 -4.2231 -2.3742 22 6 1.9512 -5.0717 -1.5520 23 6 1.4712 -6.5243 -1.5349 24 6 1.4131 -7.0591 -2.9672 25 9 0.9737 -8.3873 -2.9517 26 9 2.6875 -6.9958 -3.5407 27 6 0.4412 -6.2105 -3.7894 28 6 0.9210 -4.7578 -3.8065 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5132 0.8903 31 1 -0.3633 0.5143 -0.8896 32 1 1.6573 -0.2207 2.1399 33 1 1.6979 -1.7556 1.2383 34 1 3.9143 0.3410 1.3673 35 1 3.9417 -1.2823 2.0999 36 1 6.6749 -1.5246 -2.6361 37 1 3.9417 -1.2845 -2.0984 38 1 3.9143 0.3410 -1.3674 39 1 1.3683 -2.5429 -0.3916 40 1 -0.0139 -4.2728 -1.9276 41 1 2.9442 -5.0220 -1.9985 42 1 1.9922 -4.6910 -0.5314 43 1 0.4782 -6.5737 -1.0880 44 1 2.1639 -7.1290 -0.9495 45 1 -0.5519 -6.2598 -3.3426 46 1 0.3994 -6.5918 -4.8097 47 1 0.2289 -4.1533 -4.3926 48 1 1.9141 -4.7085 -4.2533 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968354052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:16 Heat of formation + Delta-G solvation = -160.423008 kcal Electronic energy + Delta-G solvation = -31270.731869 eV Core-core repulsion = 26994.807199 eV Total energy + Delta-G solvation = -4275.924670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.97517 -47.98193 -41.31470 -39.48778 -37.81284 -35.89933 -34.31533 -32.83537 -32.12805 -31.63932 -30.27444 -28.85827 -25.89689 -24.80145 -24.15740 -23.53499 -22.70743 -21.83468 -20.80438 -20.23726 -18.61763 -18.48738 -18.14325 -17.85110 -17.24120 -16.88314 -16.54302 -15.98494 -15.74203 -15.44619 -15.15195 -14.98185 -14.96636 -14.73909 -14.55001 -14.35903 -14.21114 -14.11078 -13.96954 -13.58989 -13.38339 -13.20052 -13.07040 -12.99924 -12.76572 -12.67860 -12.61490 -12.59220 -12.45030 -12.27592 -12.19533 -11.92975 -11.72111 -11.52661 -11.26627 -11.12778 -11.02890 -10.64940 -10.49272 -9.85685 -8.62948 -7.85905 -5.29420 1.38052 1.43634 1.46444 1.79489 2.42417 2.48052 2.80093 3.12157 3.30535 3.34212 3.41370 3.70687 3.77747 3.87986 3.90524 4.03341 4.04566 4.08158 4.17114 4.30330 4.34135 4.56358 4.58703 4.67387 4.70903 4.75398 4.80192 4.86176 4.87713 4.93654 4.97160 4.99229 5.03141 5.13915 5.18161 5.20502 5.28303 5.30885 5.31854 5.50995 5.56032 5.62583 5.74740 5.81372 6.39747 6.78775 7.15692 7.48831 7.89827 8.40283 9.18789 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.005549 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.252266 B = 5044.984537 C = 6626.036456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.597 5.597 7 C -0.241 4.241 8 H 0.072 0.928 9 C -0.048 4.048 10 N -0.934 5.934 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.307 1.307 14 H -0.270 1.270 15 C 0.171 3.829 16 C 0.137 3.863 17 H 0.059 0.941 18 N -0.687 5.687 19 C 0.509 3.491 20 O -0.595 6.595 21 C -0.098 4.098 22 C -0.107 4.107 23 C -0.146 4.146 24 C 0.271 3.729 25 F -0.208 7.208 26 F -0.224 7.224 27 C -0.144 4.144 28 C -0.097 4.097 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.008 0.992 35 H 0.058 0.942 36 H 0.242 0.758 37 H 0.047 0.953 38 H -0.010 1.010 39 H 0.407 0.593 40 H 0.147 0.853 41 H 0.033 0.967 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.088 0.912 45 H 0.134 0.866 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.946 -6.937 5.207 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.321 5.321 7 C -0.371 4.371 8 H 0.090 0.910 9 C -0.243 4.243 10 N -0.581 5.581 11 Si 0.773 3.227 12 H -0.204 1.204 13 H -0.234 1.234 14 H -0.195 1.195 15 C 0.044 3.956 16 C 0.031 3.969 17 H 0.078 0.922 18 N -0.337 5.337 19 C 0.296 3.704 20 O -0.476 6.476 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.184 4.184 24 C 0.235 3.765 25 F -0.189 7.189 26 F -0.205 7.205 27 C -0.182 4.182 28 C -0.135 4.135 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.008 0.992 39 H 0.245 0.755 40 H 0.164 0.836 41 H 0.052 0.948 42 H 0.115 0.885 43 H 0.156 0.844 44 H 0.106 0.894 45 H 0.152 0.848 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.616 -6.574 4.371 20.220 hybrid contribution 1.852 -0.704 -0.635 2.080 sum -16.764 -7.278 3.736 18.653 Atomic orbital electron populations 1.21748 0.92816 1.02450 1.02071 1.21265 0.97050 0.98889 0.93483 0.91189 1.21947 0.95319 1.00682 0.97354 1.21155 0.93965 0.95719 0.88195 1.44151 1.48029 1.39341 1.00544 1.19355 1.09028 1.03328 1.05404 0.90998 1.25610 0.98838 0.99297 1.00548 1.70161 1.38735 1.30793 1.18438 0.85696 0.78574 0.81595 0.76854 1.20448 1.23427 1.19533 1.20869 0.90466 0.94632 0.89658 1.21399 0.94833 0.82341 0.98373 0.92242 1.45700 1.66029 1.13218 1.08766 1.21083 0.76750 0.89101 0.83462 1.90660 1.52610 1.71496 1.32802 1.21421 1.02598 0.89548 0.98275 1.21420 0.97635 0.93900 1.01542 1.22525 1.07022 0.96127 0.92688 1.21663 0.79041 0.78933 0.96824 1.92982 1.89461 1.38830 1.97598 1.92981 1.44119 1.96358 1.87079 1.22520 0.99965 0.93673 1.02003 1.21246 1.01946 0.94768 0.95576 0.91881 0.90749 0.93375 0.89227 0.91421 0.97368 0.92347 0.94847 0.93446 0.99205 0.75534 0.83586 0.94806 0.88473 0.84352 0.89382 0.84814 0.88900 0.89213 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.05 71.98 0.65 -2.00 16 2 C -0.09 -2.40 2.48 -10.76 -0.03 -2.43 16 3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.11 -2.98 5.20 30.67 0.16 -2.82 16 5 C 0.13 4.96 6.51 86.36 0.56 5.52 16 6 N -0.60 -28.16 2.91 -699.11 -2.04 -30.20 16 7 C -0.24 -12.72 9.59 84.03 0.81 -11.92 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 9 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 10 N -0.93 -58.11 11.19 21.65 0.24 -57.87 16 11 Si 0.94 46.80 29.59 68.60 2.03 48.83 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.17 8.36 4.91 86.36 0.42 8.78 16 16 C 0.14 5.01 2.24 45.07 0.10 5.11 16 17 H 0.06 2.35 7.58 -2.38 -0.02 2.34 16 18 N -0.69 -21.74 4.14 -442.16 -1.83 -23.58 16 19 C 0.51 17.53 7.12 87.66 0.62 18.15 16 20 O -0.59 -26.61 15.65 -3.01 -0.05 -26.66 16 21 C -0.10 -2.35 2.52 -11.54 -0.03 -2.37 16 22 C -0.11 -2.75 4.98 30.59 0.15 -2.60 16 23 C -0.15 -2.84 5.45 30.59 0.17 -2.67 16 24 C 0.27 6.35 2.10 30.60 0.06 6.42 16 25 F -0.21 -4.90 17.06 44.97 0.77 -4.13 16 26 F -0.22 -7.34 16.02 44.97 0.72 -6.62 16 27 C -0.14 -2.65 5.45 30.59 0.17 -2.49 16 28 C -0.10 -2.44 4.37 30.59 0.13 -2.31 16 29 H 0.06 1.12 7.54 -2.39 -0.02 1.10 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.79 16 33 H 0.07 1.62 6.40 -2.39 -0.02 1.61 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.06 2.08 7.94 -2.39 -0.02 2.06 16 36 H 0.24 15.06 8.31 -92.70 -0.77 14.29 16 37 H 0.05 2.81 6.04 -2.38 -0.01 2.80 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.41 10.50 6.06 -92.71 -0.56 9.94 16 40 H 0.15 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.03 1.22 7.80 -2.39 -0.02 1.20 16 42 H 0.10 2.26 7.57 -2.38 -0.02 2.24 16 43 H 0.14 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 48 H 0.04 1.31 7.76 -2.38 -0.02 1.29 16 Total: -1.00 -76.15 373.32 4.61 -71.54 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.39 Total: 18.61 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 4.37 Total: 10.08 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -3.63 Total: -111.65 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 1.49 Total: -10.76 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -76.15 4.61 -71.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968354052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.879 kcal (2) G-P(sol) polarization free energy of solvation -76.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds