Wall clock time and date at job start Tue Mar 31 2020 17:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.45182 * 2 1 4 4 C 1.53038 * 109.46328 * 119.96957 * 2 1 3 5 5 C 1.53186 * 109.31594 * 181.38496 * 4 2 1 6 6 N 1.46931 * 108.77407 * 305.36316 * 5 4 2 7 7 C 1.36932 * 120.62741 * 233.60750 * 6 5 4 8 8 H 1.08000 * 120.00358 * 27.68326 * 7 6 5 9 9 C 1.38819 * 120.00090 * 207.67802 * 7 6 5 10 10 N 1.31621 * 119.99419 * 17.36275 * 9 7 6 11 11 Si 1.86794 * 120.00418 * 197.36300 * 9 7 6 12 12 H 1.48502 * 109.47256 * 89.99785 * 11 9 7 13 13 H 1.48500 * 109.47140 * 210.00369 * 11 9 7 14 14 H 1.48506 * 109.47050 * 330.00047 * 11 9 7 15 15 C 1.46923 * 118.73725 * 53.60763 * 6 5 4 16 16 C 1.53049 * 109.45866 * 240.03315 * 2 1 3 17 17 H 1.09000 * 109.52342 * 298.58187 * 16 2 1 18 18 N 1.46499 * 109.49309 * 58.66191 * 16 2 1 19 19 C 1.34778 * 119.99634 * 204.83540 * 18 16 2 20 20 O 1.21476 * 120.00417 * 0.02562 * 19 18 16 21 21 C 1.48460 * 119.99774 * 180.02562 * 19 18 16 22 22 C 1.39535 * 120.55094 * 179.97438 * 21 19 18 23 23 C 1.38756 * 118.26636 * 179.97438 * 22 21 19 24 24 N 1.32212 * 119.14581 * 0.02562 * 23 22 21 25 25 C 1.31876 * 121.03625 * 359.97438 * 24 23 22 26 26 C 1.50698 * 119.04115 * 179.97438 * 25 24 23 27 27 C 1.52998 * 117.49819 * 8.62913 * 26 25 24 28 28 C 1.52998 * 117.50142 * 300.00261 * 26 25 24 29 29 N 1.31589 * 121.91630 * 359.73822 * 25 24 23 30 30 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46923 * 299.96102 * 1 2 3 32 32 H 1.08993 * 109.47582 * 59.96428 * 1 2 3 33 33 H 1.09007 * 109.49317 * 301.33608 * 4 2 1 34 34 H 1.08998 * 109.49954 * 61.43121 * 4 2 1 35 35 H 1.09001 * 109.58599 * 65.15060 * 5 4 2 36 36 H 1.09004 * 109.59171 * 185.43361 * 5 4 2 37 37 H 0.97006 * 119.99875 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.58358 * 186.60649 * 15 6 5 39 39 H 1.08997 * 109.58828 * 66.18055 * 15 6 5 40 40 H 0.96995 * 120.00132 * 24.84228 * 18 16 2 41 41 H 1.08003 * 120.86284 * 0.02562 * 22 21 19 42 42 H 1.07997 * 120.42934 * 180.02562 * 23 22 21 43 43 H 1.09001 * 115.54936 * 154.32919 * 26 25 24 44 44 H 1.09003 * 117.49876 * 359.97438 * 27 26 25 45 45 H 1.08997 * 117.49954 * 145.01949 * 27 26 25 46 46 H 1.08994 * 117.49971 * 214.97635 * 28 26 25 47 47 H 1.09000 * 117.49836 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5713 -0.6886 1.2642 6 7 4.0678 -1.2489 -0.0002 7 6 4.9760 -2.2737 -0.0001 8 1 5.0090 -2.9661 0.8281 9 6 5.8543 -2.4228 -1.0648 10 7 6.0603 -1.4210 -1.8932 11 14 6.7437 -4.0452 -1.3217 12 1 5.9264 -4.9249 -2.1955 13 1 8.0584 -3.7926 -1.9643 14 1 6.9535 -4.7080 -0.0094 15 6 3.5713 -0.6886 -1.2643 16 6 2.0398 -0.7208 -1.2502 17 1 1.6977 -1.7557 -1.2389 18 7 1.5254 -0.0487 -2.4459 19 6 1.4000 -0.7314 -3.6012 20 8 1.7130 -1.9041 -3.6509 21 6 0.8793 -0.0502 -4.8132 22 6 0.7452 -0.7457 -6.0154 23 6 0.2532 -0.0627 -7.1184 24 7 -0.0689 1.2136 -6.9944 25 6 0.0702 1.8412 -5.8429 26 6 -0.3103 3.2965 -5.7523 27 6 -1.0285 3.9150 -6.9533 28 6 0.4293 4.2782 -6.6634 29 7 0.5274 1.2324 -4.7696 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5132 0.8903 32 1 -0.3634 0.5143 -0.8896 33 1 1.6572 -0.2207 2.1398 34 1 1.6978 -1.7557 1.2382 35 1 3.9143 0.3409 1.3673 36 1 3.9417 -1.2825 2.0998 37 1 6.6743 -1.5250 -2.6369 38 1 3.9415 -1.2845 -2.0985 39 1 3.9142 0.3409 -1.3675 40 1 1.2752 0.8876 -2.4062 41 1 1.0166 -1.7888 -6.0852 42 1 0.1348 -0.5670 -8.0660 43 1 -0.5946 3.6472 -4.7602 44 1 -1.2254 3.2694 -7.8092 45 1 -1.7856 4.6727 -6.7515 46 1 0.6311 5.2748 -6.2710 47 1 1.1914 3.8715 -7.3281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968373989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:28 Heat of formation + Delta-G solvation = 59.065749 kcal Electronic energy + Delta-G solvation = -28557.067731 eV Core-core repulsion = 24741.349994 eV Total energy + Delta-G solvation = -3815.717737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.41044 -39.49022 -37.71725 -37.12141 -34.47484 -33.98003 -33.02897 -31.92134 -30.96699 -29.00415 -27.39545 -25.71728 -25.16423 -24.04866 -22.77845 -22.58068 -21.55115 -20.97858 -20.13012 -19.41338 -18.01686 -17.75744 -16.80039 -16.02902 -15.58526 -15.48271 -15.42684 -14.84863 -14.80822 -14.25232 -14.08622 -13.85911 -13.72866 -13.49808 -13.34167 -12.99467 -12.47822 -12.41582 -12.02086 -11.78659 -11.66552 -11.58890 -11.20777 -11.12482 -10.93064 -10.89364 -10.73543 -10.72037 -10.64176 -10.44818 -10.24060 -10.12393 -9.92770 -9.79990 -9.52904 -9.49158 -9.31586 -8.57553 -8.42473 -6.66181 -5.75321 -3.18489 0.42852 0.73892 2.84852 3.16878 3.43015 3.46205 3.50035 3.50466 3.52380 3.81237 3.99373 4.50680 4.57274 4.59757 4.65812 4.75625 4.83130 4.96631 5.16965 5.26773 5.31738 5.40146 5.40332 5.48063 5.55151 5.58469 5.61444 5.83183 5.91580 5.93619 6.02243 6.03570 6.09590 6.11627 6.24380 6.38259 6.46396 6.51239 6.66937 6.72320 6.75714 6.89623 6.97383 7.27624 7.71116 7.73064 7.83530 7.91895 8.44031 8.49061 9.22885 9.87026 10.41894 11.32631 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.003419 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.381423 B = 8187.883498 C = 9307.834671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.902 3.098 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.166 3.834 16 C 0.121 3.879 17 H 0.084 0.916 18 N -0.691 5.691 19 C 0.562 3.438 20 O -0.516 6.516 21 C 0.147 3.853 22 C -0.179 4.179 23 C 0.152 3.848 24 N -0.509 5.509 25 C 0.346 3.654 26 C -0.102 4.102 27 C -0.154 4.154 28 C -0.155 4.155 29 N -0.491 5.491 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.056 0.944 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.404 0.596 41 H 0.162 0.838 42 H 0.176 0.824 43 H 0.131 0.869 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.104 0.896 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 9.634 -7.651 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.039 3.961 16 C 0.016 3.984 17 H 0.102 0.898 18 N -0.341 5.341 19 C 0.345 3.655 20 O -0.390 6.390 21 C -0.001 4.001 22 C -0.202 4.202 23 C -0.015 4.015 24 N -0.224 5.224 25 C 0.079 3.921 26 C -0.122 4.122 27 C -0.191 4.191 28 C -0.193 4.193 29 N -0.207 5.207 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.239 0.761 41 H 0.179 0.821 42 H 0.193 0.807 43 H 0.149 0.851 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.506 9.681 -7.660 19.820 hybrid contribution 0.664 -1.285 -0.302 1.477 sum -14.842 8.397 -7.962 18.820 Atomic orbital electron populations 1.21856 0.95950 1.01536 1.00887 1.21301 0.94640 0.99775 0.95376 0.91329 1.22070 0.98930 1.00043 0.95418 1.20967 0.90816 0.96535 0.90139 1.43954 1.48070 1.39855 0.99139 1.19161 1.09756 1.03204 1.06422 0.91522 1.25038 0.97158 0.97416 0.99691 1.70025 1.37509 1.29016 1.17738 0.86295 0.78673 0.83811 0.78026 1.21258 1.21796 1.20402 1.21099 0.86213 0.97621 0.91135 1.22135 0.98594 0.96406 0.81242 0.89751 1.45922 1.63597 1.14765 1.09779 1.17711 0.79195 0.86180 0.82464 1.90845 1.49188 1.15207 1.83798 1.21895 0.93483 0.89709 0.95035 1.23005 0.99895 1.03878 0.93416 1.23294 0.90125 0.89400 0.98687 1.68018 1.17056 1.10312 1.26973 1.22064 0.90752 0.95566 0.83767 1.20629 1.07347 0.86210 0.97990 1.23025 0.95012 1.02447 0.98644 1.22994 0.95863 0.98915 1.01508 1.68062 1.11282 1.09316 1.32048 0.92968 0.93035 0.93139 0.92518 0.92069 0.96367 0.92553 0.93673 0.88680 0.96343 0.76109 0.82072 0.80657 0.85135 0.87240 0.88163 0.87794 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.02 37.16 0.34 -1.61 16 2 C -0.09 -1.49 2.27 -90.58 -0.21 -1.70 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 4 C -0.12 -2.10 5.36 -26.62 -0.14 -2.25 16 5 C 0.14 2.93 6.51 -3.71 -0.02 2.91 16 6 N -0.59 -14.91 2.99 -172.32 -0.52 -15.42 16 7 C -0.26 -7.18 9.59 -15.06 -0.14 -7.32 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 10 N -0.90 -26.90 11.19 55.49 0.62 -26.28 16 11 Si 0.90 22.51 29.59 -169.99 -5.03 17.48 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.17 4.08 4.88 -3.72 -0.02 4.06 16 16 C 0.12 2.38 2.06 -67.81 -0.14 2.24 16 17 H 0.08 1.86 7.58 -51.93 -0.39 1.46 16 18 N -0.69 -11.99 4.36 -54.44 -0.24 -12.23 16 19 C 0.56 10.34 7.80 -12.05 -0.09 10.25 16 20 O -0.52 -11.30 16.09 5.39 0.09 -11.21 16 21 C 0.15 2.27 6.79 -82.63 -0.56 1.71 16 22 C -0.18 -2.31 9.72 -38.91 -0.38 -2.69 16 23 C 0.15 1.61 11.31 -17.20 -0.19 1.42 16 24 N -0.51 -6.05 9.32 -10.74 -0.10 -6.15 16 25 C 0.35 4.37 7.31 -157.30 -1.15 3.22 16 26 C -0.10 -0.99 6.23 -91.77 -0.57 -1.57 16 27 C -0.15 -1.19 10.01 -26.73 -0.27 -1.46 16 28 C -0.15 -1.27 10.23 -26.73 -0.27 -1.55 16 29 N -0.49 -7.00 9.60 -7.32 -0.07 -7.07 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 33 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 2.74 6.04 -51.93 -0.31 2.42 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.40 6.15 7.69 -40.82 -0.31 5.84 16 41 H 0.16 1.95 7.74 -52.48 -0.41 1.55 16 42 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.11 0.92 7.53 -51.93 -0.39 0.53 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -32.99 384.16 -10.61 -43.59 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.23 Total: 5.76 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -3.92 Total: 5.75 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -0.30 Total: -67.16 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.99 -10.61 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968373989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.660 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds