Wall clock time and date at job start Tue Mar 31 2020 17:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.45182 * 2 1 4 4 C 1.53038 * 109.46328 * 119.96957 * 2 1 3 5 5 C 1.53186 * 109.31594 * 181.38496 * 4 2 1 6 6 N 1.46931 * 108.77407 * 305.36316 * 5 4 2 7 7 C 1.36932 * 120.62741 * 233.60750 * 6 5 4 8 8 H 1.08000 * 120.00358 * 27.68326 * 7 6 5 9 9 C 1.38819 * 120.00090 * 207.67802 * 7 6 5 10 10 N 1.31621 * 119.99419 * 17.36275 * 9 7 6 11 11 Si 1.86794 * 120.00418 * 197.36300 * 9 7 6 12 12 H 1.48502 * 109.47256 * 89.99785 * 11 9 7 13 13 H 1.48500 * 109.47140 * 210.00369 * 11 9 7 14 14 H 1.48506 * 109.47050 * 330.00047 * 11 9 7 15 15 C 1.46923 * 118.73725 * 53.60763 * 6 5 4 16 16 C 1.53049 * 109.45866 * 240.03315 * 2 1 3 17 17 H 1.09000 * 109.52342 * 298.58187 * 16 2 1 18 18 N 1.46499 * 109.49309 * 58.66191 * 16 2 1 19 19 C 1.34778 * 119.99634 * 204.83540 * 18 16 2 20 20 O 1.21476 * 120.00417 * 0.02562 * 19 18 16 21 21 C 1.48460 * 119.99774 * 180.02562 * 19 18 16 22 22 C 1.39535 * 120.55094 * 179.97438 * 21 19 18 23 23 C 1.38756 * 118.26636 * 179.97438 * 22 21 19 24 24 N 1.32212 * 119.14581 * 0.02562 * 23 22 21 25 25 C 1.31876 * 121.03625 * 359.97438 * 24 23 22 26 26 C 1.50698 * 119.04115 * 179.97438 * 25 24 23 27 27 C 1.52998 * 117.49819 * 8.62913 * 26 25 24 28 28 C 1.52998 * 117.50142 * 300.00261 * 26 25 24 29 29 N 1.31589 * 121.91630 * 359.73822 * 25 24 23 30 30 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46923 * 299.96102 * 1 2 3 32 32 H 1.08993 * 109.47582 * 59.96428 * 1 2 3 33 33 H 1.09007 * 109.49317 * 301.33608 * 4 2 1 34 34 H 1.08998 * 109.49954 * 61.43121 * 4 2 1 35 35 H 1.09001 * 109.58599 * 65.15060 * 5 4 2 36 36 H 1.09004 * 109.59171 * 185.43361 * 5 4 2 37 37 H 0.97006 * 119.99875 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.58358 * 186.60649 * 15 6 5 39 39 H 1.08997 * 109.58828 * 66.18055 * 15 6 5 40 40 H 0.96995 * 120.00132 * 24.84228 * 18 16 2 41 41 H 1.08003 * 120.86284 * 0.02562 * 22 21 19 42 42 H 1.07997 * 120.42934 * 180.02562 * 23 22 21 43 43 H 1.09001 * 115.54936 * 154.32919 * 26 25 24 44 44 H 1.09003 * 117.49876 * 359.97438 * 27 26 25 45 45 H 1.08997 * 117.49954 * 145.01949 * 27 26 25 46 46 H 1.08994 * 117.49971 * 214.97635 * 28 26 25 47 47 H 1.09000 * 117.49836 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5713 -0.6886 1.2642 6 7 4.0678 -1.2489 -0.0002 7 6 4.9760 -2.2737 -0.0001 8 1 5.0090 -2.9661 0.8281 9 6 5.8543 -2.4228 -1.0648 10 7 6.0603 -1.4210 -1.8932 11 14 6.7437 -4.0452 -1.3217 12 1 5.9264 -4.9249 -2.1955 13 1 8.0584 -3.7926 -1.9643 14 1 6.9535 -4.7080 -0.0094 15 6 3.5713 -0.6886 -1.2643 16 6 2.0398 -0.7208 -1.2502 17 1 1.6977 -1.7557 -1.2389 18 7 1.5254 -0.0487 -2.4459 19 6 1.4000 -0.7314 -3.6012 20 8 1.7130 -1.9041 -3.6509 21 6 0.8793 -0.0502 -4.8132 22 6 0.7452 -0.7457 -6.0154 23 6 0.2532 -0.0627 -7.1184 24 7 -0.0689 1.2136 -6.9944 25 6 0.0702 1.8412 -5.8429 26 6 -0.3103 3.2965 -5.7523 27 6 -1.0285 3.9150 -6.9533 28 6 0.4293 4.2782 -6.6634 29 7 0.5274 1.2324 -4.7696 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5132 0.8903 32 1 -0.3634 0.5143 -0.8896 33 1 1.6572 -0.2207 2.1398 34 1 1.6978 -1.7557 1.2382 35 1 3.9143 0.3409 1.3673 36 1 3.9417 -1.2825 2.0998 37 1 6.6743 -1.5250 -2.6369 38 1 3.9415 -1.2845 -2.0985 39 1 3.9142 0.3409 -1.3675 40 1 1.2752 0.8876 -2.4062 41 1 1.0166 -1.7888 -6.0852 42 1 0.1348 -0.5670 -8.0660 43 1 -0.5946 3.6472 -4.7602 44 1 -1.2254 3.2694 -7.8092 45 1 -1.7856 4.6727 -6.7515 46 1 0.6311 5.2748 -6.2710 47 1 1.1914 3.8715 -7.3281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968373989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:27 Heat of formation + Delta-G solvation = 38.324705 kcal Electronic energy + Delta-G solvation = -28557.967130 eV Core-core repulsion = 24741.349994 eV Total energy + Delta-G solvation = -3816.617137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.44835 -40.95551 -39.24573 -37.92181 -36.20024 -35.20407 -34.52982 -32.92445 -32.83822 -30.64891 -29.04337 -26.93900 -26.10391 -25.84353 -24.15002 -23.20571 -22.84161 -22.50257 -21.54370 -20.89678 -19.22131 -18.80155 -18.76000 -17.22037 -16.88833 -16.83182 -16.57737 -16.47899 -15.84889 -15.68765 -15.38788 -15.24586 -15.17862 -14.93856 -14.84918 -14.48987 -14.11891 -13.60015 -13.32378 -13.24393 -13.08284 -12.77471 -12.61078 -12.40318 -12.36999 -12.20260 -12.09763 -11.97992 -11.93288 -11.89351 -11.72407 -11.67221 -11.38283 -11.27186 -11.25102 -10.58527 -10.47731 -10.39725 -10.18399 -8.73009 -7.91561 -5.37429 -0.68576 -0.19943 1.39927 1.45014 1.51309 1.57339 1.84846 2.46341 2.51415 2.55285 2.87512 3.15104 3.24623 3.43912 3.62443 3.74657 3.78161 3.89438 3.92932 3.96468 4.11739 4.12342 4.14999 4.43150 4.47532 4.51473 4.59583 4.63509 4.71124 4.82171 4.89331 4.95169 4.97524 5.09061 5.11822 5.14940 5.16043 5.21870 5.22477 5.34122 5.34713 5.41192 5.49967 5.59324 5.67912 5.72787 6.31292 6.40243 6.83928 7.01889 7.10090 7.81574 8.31447 9.13547 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.003419 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.381423 B = 8187.883498 C = 9307.834671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.263 4.263 8 H 0.071 0.929 9 C -0.051 4.051 10 N -0.932 5.932 11 Si 0.963 3.037 12 H -0.293 1.293 13 H -0.292 1.292 14 H -0.261 1.261 15 C 0.180 3.820 16 C 0.137 3.863 17 H 0.058 0.942 18 N -0.682 5.682 19 C 0.559 3.441 20 O -0.561 6.561 21 C 0.123 3.877 22 C -0.184 4.184 23 C 0.168 3.832 24 N -0.509 5.509 25 C 0.337 3.663 26 C -0.123 4.123 27 C -0.136 4.136 28 C -0.151 4.151 29 N -0.503 5.503 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.247 0.753 38 H 0.045 0.955 39 H -0.003 1.003 40 H 0.416 0.584 41 H 0.164 0.836 42 H 0.221 0.779 43 H 0.139 0.861 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 10.990 -7.667 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.393 4.393 8 H 0.088 0.912 9 C -0.247 4.247 10 N -0.578 5.578 11 Si 0.791 3.209 12 H -0.220 1.220 13 H -0.218 1.218 14 H -0.185 1.185 15 C 0.053 3.947 16 C 0.031 3.969 17 H 0.076 0.924 18 N -0.332 5.332 19 C 0.343 3.657 20 O -0.439 6.439 21 C -0.024 4.024 22 C -0.207 4.207 23 C 0.000 4.000 24 N -0.223 5.223 25 C 0.071 3.929 26 C -0.142 4.142 27 C -0.173 4.173 28 C -0.189 4.189 29 N -0.219 5.219 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.182 0.818 42 H 0.238 0.762 43 H 0.157 0.843 44 H 0.121 0.879 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.826 11.079 -7.633 22.333 hybrid contribution 1.363 -1.645 -0.341 2.163 sum -16.463 9.434 -7.973 20.582 Atomic orbital electron populations 1.21764 0.93012 1.01757 1.02670 1.21279 0.96936 0.99366 0.92878 0.90462 1.21965 0.95669 1.00355 0.97352 1.21191 0.93584 0.96224 0.87991 1.44235 1.48150 1.39874 1.00912 1.19527 1.09601 1.03916 1.06304 0.91158 1.25813 0.98616 1.00364 0.99889 1.70187 1.38517 1.30836 1.18248 0.85325 0.77180 0.80055 0.78324 1.22015 1.21849 1.18520 1.20759 0.89431 0.94980 0.89573 1.21683 0.95126 0.96086 0.83973 0.92421 1.45775 1.63038 1.15207 1.09161 1.18227 0.78209 0.85815 0.83413 1.90807 1.51164 1.17225 1.84671 1.21504 0.95644 0.90729 0.94489 1.23175 1.00032 1.04160 0.93322 1.23998 0.87740 0.88843 0.99376 1.68161 1.16905 1.10729 1.26495 1.22684 0.89970 0.96789 0.83477 1.20816 1.09256 0.84833 0.99342 1.23102 0.95172 1.02076 0.96990 1.23066 0.96048 0.99166 1.00630 1.68012 1.12064 1.08719 1.33149 0.93540 0.90084 0.92532 0.88352 0.92802 0.96128 0.92311 0.94434 0.93634 0.98516 0.74682 0.81849 0.76226 0.84326 0.87873 0.85777 0.85911 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.02 71.98 0.65 -2.60 16 2 C -0.09 -2.65 2.27 -10.77 -0.02 -2.68 16 3 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.11 -3.62 5.36 30.67 0.16 -3.46 16 5 C 0.13 5.52 6.51 86.36 0.56 6.09 16 6 N -0.61 -31.79 2.99 -699.11 -2.09 -33.89 16 7 C -0.26 -15.19 9.59 84.04 0.81 -14.38 16 8 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 9 C -0.05 -3.04 4.91 84.86 0.42 -2.63 16 10 N -0.93 -58.57 11.19 21.65 0.24 -58.33 16 11 Si 0.96 47.77 29.59 68.60 2.03 49.80 16 12 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 13 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 14 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 15 C 0.18 9.28 4.88 86.36 0.42 9.70 16 16 C 0.14 5.55 2.06 45.07 0.09 5.64 16 17 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 18 N -0.68 -24.45 4.36 -444.45 -1.94 -26.39 16 19 C 0.56 21.60 7.80 86.97 0.68 22.28 16 20 O -0.56 -26.20 16.09 -3.64 -0.06 -26.26 16 21 C 0.12 3.88 6.79 42.00 0.29 4.17 16 22 C -0.18 -4.72 9.72 22.71 0.22 -4.50 16 23 C 0.17 3.25 11.31 84.76 0.96 4.20 16 24 N -0.51 -11.20 9.32 -187.89 -1.75 -12.95 16 25 C 0.34 8.17 7.31 138.79 1.01 9.18 16 26 C -0.12 -2.18 6.23 -11.54 -0.07 -2.25 16 27 C -0.14 -1.74 10.01 30.60 0.31 -1.44 16 28 C -0.15 -2.18 10.23 30.60 0.31 -1.87 16 29 N -0.50 -14.28 9.60 -177.07 -1.70 -15.98 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.30 7.35 -2.39 -0.02 1.29 16 33 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 2.34 7.94 -2.39 -0.02 2.32 16 37 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 38 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.42 12.78 7.69 -92.71 -0.71 12.07 16 41 H 0.16 4.05 7.74 -2.91 -0.02 4.02 16 42 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.10 1.49 7.53 -2.39 -0.02 1.47 16 45 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -76.82 384.16 1.79 -75.03 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.27 Total: 23.49 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 6.79 Total: 25.47 kcal Atomic # 7 Polarization: -140.29 SS G_CDS: -7.24 Total: -147.53 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -76.82 1.79 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968373989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.356 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds