Wall clock time and date at job start Tue Mar 31 2020 17:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.45089 * 2 1 4 4 C 1.53041 * 109.45964 * 240.02924 * 2 1 3 5 5 C 1.53194 * 109.31049 * 178.61731 * 4 2 1 6 6 N 1.46922 * 108.77837 * 54.63808 * 5 4 2 7 7 C 1.36941 * 120.63211 * 126.40967 * 6 5 4 8 8 H 1.08000 * 119.99834 * 331.84016 * 7 6 5 9 9 C 1.38812 * 119.99983 * 151.83176 * 7 6 5 10 10 N 1.31625 * 120.00074 * 343.07939 * 9 7 6 11 11 Si 1.86795 * 120.00013 * 163.07613 * 9 7 6 12 12 H 1.48503 * 109.47082 * 60.00458 * 11 9 7 13 13 H 1.48500 * 109.47214 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47353 * 300.00234 * 11 9 7 15 15 C 1.47003 * 118.75465 * 306.39191 * 6 5 4 16 16 C 1.53046 * 109.45701 * 119.96637 * 2 1 3 17 17 H 1.09004 * 109.49802 * 301.36860 * 16 2 1 18 18 N 1.46497 * 109.49915 * 61.43169 * 16 2 1 19 19 C 1.34778 * 120.00172 * 204.93214 * 18 16 2 20 20 O 1.21470 * 119.99861 * 0.02562 * 19 18 16 21 21 C 1.48460 * 119.99762 * 180.27296 * 19 18 16 22 22 C 1.39534 * 120.54739 * 179.44302 * 21 19 18 23 23 C 1.38757 * 118.26108 * 179.78270 * 22 21 19 24 24 N 1.32197 * 119.14931 * 0.50169 * 23 22 21 25 25 C 1.31880 * 121.03555 * 359.74270 * 24 23 22 26 26 C 1.50705 * 119.03996 * 179.97438 * 25 24 23 27 27 C 1.53005 * 117.49976 * 8.77177 * 26 25 24 28 28 C 1.52998 * 117.49871 * 300.10919 * 26 25 24 29 29 N 1.31577 * 121.92028 * 0.02562 * 25 24 23 30 30 H 1.08996 * 109.46738 * 300.03603 * 1 2 3 31 31 H 1.09000 * 109.46418 * 60.03138 * 1 2 3 32 32 H 1.08997 * 109.46875 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.50285 * 298.56847 * 4 2 1 34 34 H 1.09000 * 109.49505 * 58.67040 * 4 2 1 35 35 H 1.09001 * 109.58816 * 174.43029 * 5 4 2 36 36 H 1.09005 * 109.58863 * 294.70995 * 5 4 2 37 37 H 0.97001 * 120.00107 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.57748 * 293.82641 * 15 6 5 39 39 H 1.08998 * 109.62843 * 173.37698 * 15 6 5 40 40 H 0.97004 * 119.99701 * 24.94257 * 18 16 2 41 41 H 1.08007 * 120.86854 * 0.02562 * 22 21 19 42 42 H 1.08009 * 120.42070 * 180.24315 * 23 22 21 43 43 H 1.09001 * 115.54677 * 154.43782 * 26 25 24 44 44 H 1.08993 * 117.49706 * 359.97438 * 27 26 25 45 45 H 1.08995 * 117.49595 * 145.02043 * 27 26 25 46 46 H 1.09000 * 117.49711 * 214.97985 * 28 26 25 47 47 H 1.08999 * 117.50348 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2641 6 7 4.0679 -1.2489 0.0001 7 6 4.9764 -2.2736 0.0002 8 1 5.0045 -2.9704 -0.8245 9 6 5.8613 -2.4165 1.0600 10 7 6.0657 -1.4128 1.8867 11 14 6.7621 -4.0332 1.3132 12 1 7.5861 -4.3337 0.1149 13 1 7.6421 -3.9283 2.5048 14 1 5.7747 -5.1228 1.5209 15 6 3.5714 -0.6886 1.2652 16 6 2.0398 -0.7208 1.2502 17 1 1.6567 -0.2211 2.1399 18 7 1.5800 -2.1117 1.2344 19 6 1.4527 -2.7925 2.3905 20 8 1.7188 -2.2527 3.4457 21 6 0.9926 -4.2039 2.3739 22 6 0.8678 -4.9232 3.5631 23 6 0.4293 -6.2378 3.4929 24 7 0.1565 -6.7633 2.3109 25 6 0.2902 -6.0567 1.2054 26 6 -0.0328 -6.7010 -0.1181 27 6 -0.6956 -8.0797 -0.0897 28 6 0.7689 -7.9426 -0.5138 29 7 0.6983 -4.8060 1.2242 30 1 -0.3632 0.5144 0.8896 31 1 -0.3632 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7557 -1.2383 34 1 1.6573 -0.2208 -2.1398 35 1 3.9418 -1.2846 -2.0983 36 1 3.9144 0.3406 -1.3697 37 1 6.6838 -1.5127 2.6276 38 1 3.9143 0.3408 1.3683 39 1 3.9411 -1.2844 2.0997 40 1 1.3674 -2.5426 0.3917 41 1 1.1026 -4.4673 4.5137 42 1 0.3164 -6.8254 4.3920 43 1 -0.3274 -6.0173 -0.9143 44 1 -0.8976 -8.5210 0.8863 45 1 -1.4259 -8.3032 -0.8674 46 1 1.0014 -8.0760 -1.5703 47 1 1.5302 -8.2933 0.1830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968373990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:31 Heat of formation + Delta-G solvation = 60.818815 kcal Electronic energy + Delta-G solvation = -29436.129755 eV Core-core repulsion = 25620.488036 eV Total energy + Delta-G solvation = -3815.641719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.26295 -39.49376 -37.66774 -36.98263 -34.21870 -33.86645 -32.69850 -31.78102 -31.00778 -29.23964 -27.36702 -25.61613 -25.02702 -24.02971 -22.59588 -22.45241 -21.71006 -21.09296 -20.28560 -18.70260 -18.05928 -17.67909 -16.66821 -15.92518 -15.50482 -15.34242 -15.08867 -14.79426 -14.76346 -14.18234 -14.04102 -13.85303 -13.71900 -13.53699 -13.25367 -12.94287 -12.57507 -12.34032 -11.95361 -11.66719 -11.58376 -11.41750 -11.12344 -11.06378 -10.98876 -10.90987 -10.73426 -10.72316 -10.59684 -10.50367 -10.23614 -10.03536 -9.89710 -9.65949 -9.51217 -9.35202 -9.20102 -8.45473 -8.40707 -6.63539 -5.76098 -3.18509 0.58169 0.88981 2.99453 3.35765 3.38068 3.44400 3.44999 3.59740 3.68620 3.97327 4.13907 4.50816 4.69938 4.73071 4.80793 4.88508 4.97537 5.09252 5.19004 5.25673 5.34572 5.42419 5.44795 5.52611 5.56783 5.66142 5.71242 5.89588 5.93711 5.96874 6.01926 6.05370 6.16565 6.23955 6.28224 6.35973 6.44615 6.53672 6.64845 6.76359 6.81339 6.89457 6.99859 7.33468 7.65094 7.81485 7.90131 8.09244 8.47539 8.62429 9.22595 9.86629 10.42401 11.31951 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.005035 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.244268 B = 5559.308106 C = 6528.549649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.586 5.586 7 C -0.251 4.251 8 H 0.063 0.937 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.287 1.287 15 C 0.161 3.839 16 C 0.121 3.879 17 H 0.078 0.922 18 N -0.669 5.669 19 C 0.565 3.435 20 O -0.532 6.532 21 C 0.150 3.850 22 C -0.182 4.182 23 C 0.150 3.850 24 N -0.510 5.510 25 C 0.346 3.654 26 C -0.100 4.100 27 C -0.154 4.154 28 C -0.154 4.154 29 N -0.486 5.486 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.254 0.746 38 H 0.028 0.972 39 H 0.096 0.904 40 H 0.407 0.593 41 H 0.160 0.840 42 H 0.175 0.825 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 -7.136 -2.498 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.170 4.170 5 C 0.017 3.983 6 N -0.309 5.309 7 C -0.380 4.380 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.214 1.214 15 C 0.034 3.966 16 C 0.016 3.984 17 H 0.096 0.904 18 N -0.319 5.319 19 C 0.347 3.653 20 O -0.409 6.409 21 C 0.002 3.998 22 C -0.204 4.204 23 C -0.017 4.017 24 N -0.225 5.225 25 C 0.079 3.921 26 C -0.120 4.120 27 C -0.192 4.192 28 C -0.193 4.193 29 N -0.203 5.203 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.244 0.756 41 H 0.178 0.822 42 H 0.192 0.808 43 H 0.148 0.852 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.122 0.878 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.092 -7.057 -2.488 16.845 hybrid contribution 0.785 -0.599 0.704 1.213 sum -14.307 -7.657 -1.784 16.325 Atomic orbital electron populations 1.21860 0.95959 1.01456 1.00988 1.21311 0.94644 0.99881 0.95386 0.90243 1.22096 0.99222 0.99622 0.96046 1.20928 0.90685 0.96519 0.90211 1.43973 1.48212 1.39575 0.99146 1.19038 1.09532 1.02906 1.06541 0.91961 1.24986 0.97197 0.97096 0.99949 1.69985 1.37369 1.28874 1.18005 0.86469 0.79355 0.84157 0.77391 1.20855 1.21559 1.21411 1.21215 0.86366 0.97941 0.91076 1.21943 0.99243 0.79971 0.97251 0.90372 1.45709 1.63947 1.13787 1.08424 1.17639 0.78876 0.83855 0.84938 1.90769 1.50914 1.68298 1.30883 1.21882 0.93159 0.95661 0.89105 1.22969 1.00154 0.96244 1.01071 1.23254 0.90491 0.92108 0.95872 1.67996 1.16632 1.38943 0.98927 1.22054 0.90719 0.86193 0.93168 1.20621 1.07512 0.91117 0.92791 1.23027 0.95468 0.96812 1.03862 1.23001 0.95129 0.98682 1.02444 1.68072 1.11285 1.11613 1.29279 0.93110 0.93040 0.92997 0.92510 0.92683 0.92795 0.96383 0.93570 0.95379 0.88552 0.75594 0.82226 0.80796 0.85170 0.87302 0.88231 0.87798 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.05 37.16 0.34 -1.57 16 2 C -0.09 -1.47 2.48 -90.57 -0.22 -1.69 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.13 -2.10 5.20 -26.61 -0.14 -2.24 16 5 C 0.14 2.87 6.52 -3.71 -0.02 2.84 16 6 N -0.59 -14.28 2.91 -172.26 -0.50 -14.79 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -26.58 11.19 55.49 0.62 -25.96 16 11 Si 0.90 22.53 29.59 -169.99 -5.03 17.50 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 C 0.16 3.84 4.91 -3.67 -0.02 3.83 16 16 C 0.12 2.32 2.24 -67.81 -0.15 2.17 16 17 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 18 N -0.67 -12.59 4.25 -54.44 -0.23 -12.82 16 19 C 0.56 11.16 7.80 -12.05 -0.09 11.06 16 20 O -0.53 -11.76 16.09 5.39 0.09 -11.68 16 21 C 0.15 2.62 6.79 -82.63 -0.56 2.05 16 22 C -0.18 -2.64 9.72 -38.91 -0.38 -3.02 16 23 C 0.15 1.83 11.31 -17.20 -0.19 1.64 16 24 N -0.51 -6.97 9.33 -10.74 -0.10 -7.07 16 25 C 0.35 5.08 7.31 -157.30 -1.15 3.93 16 26 C -0.10 -1.18 6.23 -91.77 -0.57 -1.75 16 27 C -0.15 -1.43 10.01 -26.69 -0.27 -1.69 16 28 C -0.15 -1.59 10.24 -26.69 -0.27 -1.86 16 29 N -0.49 -8.07 9.60 -7.32 -0.07 -8.14 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 33 H 0.06 0.94 6.40 -51.93 -0.33 0.60 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 2.72 6.06 -51.93 -0.31 2.40 16 40 H 0.41 7.35 6.02 -40.82 -0.25 7.11 16 41 H 0.16 2.13 7.74 -52.48 -0.41 1.73 16 42 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.13 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.11 1.07 7.54 -51.93 -0.39 0.68 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -32.19 381.05 -10.51 -42.70 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.09 Total: 7.72 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -3.94 Total: 6.81 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -0.28 Total: -68.78 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.19 -10.51 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968373990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.515 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds