Wall clock time and date at job start Tue Mar 31 2020 17:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.46357 * 2 1 4 4 C 1.53044 * 109.44877 * 240.02914 * 2 1 3 5 5 C 1.53193 * 109.31327 * 178.62071 * 4 2 1 6 6 N 1.46931 * 108.77154 * 54.64015 * 5 4 2 7 7 C 1.36936 * 120.63222 * 126.41425 * 6 5 4 8 8 H 1.07997 * 119.99788 * 332.60067 * 7 6 5 9 9 C 1.38812 * 120.00188 * 152.59583 * 7 6 5 10 10 N 1.31621 * 119.99767 * 159.35052 * 9 7 6 11 11 Si 1.86800 * 120.00237 * 339.35978 * 9 7 6 12 12 H 1.48499 * 109.47027 * 92.91500 * 11 9 7 13 13 H 1.48500 * 109.47281 * 212.91864 * 11 9 7 14 14 H 1.48507 * 109.46980 * 332.92090 * 11 9 7 15 15 C 1.46928 * 118.73979 * 306.38621 * 6 5 4 16 16 C 1.53037 * 109.45900 * 119.97212 * 2 1 3 17 17 H 1.09005 * 109.50008 * 61.38418 * 16 2 1 18 18 N 1.46505 * 109.49896 * 301.31941 * 16 2 1 19 19 C 1.34770 * 119.99876 * 154.99504 * 18 16 2 20 20 O 1.21559 * 120.00658 * 0.02562 * 19 18 16 21 21 C 1.47838 * 119.99847 * 179.72586 * 19 18 16 22 22 C 1.39948 * 120.93802 * 0.02562 * 21 19 18 23 23 N 1.32141 * 118.92519 * 179.76331 * 22 21 19 24 24 C 1.31877 * 120.96294 * 0.52044 * 23 22 21 25 25 C 1.50701 * 118.94843 * 179.75121 * 24 23 22 26 26 C 1.52999 * 117.50365 * 8.72195 * 25 24 23 27 27 C 1.53001 * 117.50050 * 300.05950 * 25 24 23 28 28 N 1.31863 * 122.09863 * 359.72744 * 24 23 22 29 29 C 1.32145 * 120.96496 * 359.97438 * 28 24 23 30 30 H 1.08998 * 109.47021 * 300.03305 * 1 2 3 31 31 H 1.09001 * 109.47076 * 60.02731 * 1 2 3 32 32 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50255 * 298.57381 * 4 2 1 34 34 H 1.08999 * 109.49868 * 58.67617 * 4 2 1 35 35 H 1.09002 * 109.59064 * 174.42340 * 5 4 2 36 36 H 1.08996 * 109.59115 * 294.70968 * 5 4 2 37 37 H 0.97006 * 119.99502 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58970 * 293.82890 * 15 6 5 39 39 H 1.08996 * 109.58788 * 173.39489 * 15 6 5 40 40 H 0.96995 * 119.99759 * 335.00863 * 18 16 2 41 41 H 1.08001 * 120.53282 * 359.97438 * 22 21 19 42 42 H 1.09004 * 115.54778 * 154.39521 * 25 24 23 43 43 H 1.09006 * 117.49262 * 0.02562 * 26 25 24 44 44 H 1.09000 * 117.50327 * 145.01768 * 26 25 24 45 45 H 1.08992 * 117.50363 * 214.98342 * 27 25 24 46 46 H 1.09003 * 117.49849 * 0.02562 * 27 25 24 47 47 H 1.08004 * 120.53942 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7209 -1.2501 5 6 3.5711 -0.6890 -1.2645 6 7 4.0675 -1.2495 -0.0003 7 6 4.9759 -2.2742 -0.0003 8 1 5.0120 -2.9636 -0.8308 9 6 5.8502 -2.4268 1.0670 10 7 6.4267 -3.5899 1.2843 11 14 6.2085 -0.9815 2.1949 12 1 5.2796 -1.0154 3.3531 13 1 7.6090 -1.0681 2.6808 14 1 6.0214 0.2880 1.4474 15 6 3.5713 -0.6891 1.2641 16 6 2.0398 -0.7209 1.2500 17 1 1.6970 -1.7556 1.2386 18 7 1.5258 -0.0487 2.4460 19 6 1.3972 -0.7322 3.6003 20 8 1.7081 -1.9064 3.6494 21 6 0.8843 -0.0524 4.8088 22 6 0.5260 1.3001 4.7760 23 7 0.0676 1.8667 5.8782 24 6 -0.0442 1.1796 6.9983 25 6 -0.5672 1.8727 8.2301 26 6 -1.1319 3.2845 8.0604 27 6 0.2190 3.0779 8.7501 28 7 0.2866 -0.0946 7.0747 29 6 0.7483 -0.7416 6.0191 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6973 -1.7557 -1.2384 34 1 1.6570 -0.2208 -2.1399 35 1 3.9412 -1.2851 -2.0987 36 1 3.9142 0.3401 -1.3702 37 1 7.0374 -3.6966 2.0304 38 1 3.9144 0.3403 1.3671 39 1 3.9415 -1.2851 2.0982 40 1 1.2779 0.8882 2.4069 41 1 0.6194 1.8705 3.8637 42 1 -1.0425 1.2258 8.9674 43 1 -1.1255 3.7119 7.0576 44 1 -1.9786 3.5666 8.6862 45 1 0.2605 3.2242 9.8293 46 1 1.1142 3.3698 8.2010 47 1 1.0168 -1.7854 6.0893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968395720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:38 Heat of formation + Delta-G solvation = 64.202515 kcal Electronic energy + Delta-G solvation = -28516.882917 eV Core-core repulsion = 24701.387927 eV Total energy + Delta-G solvation = -3815.494990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.56189 -39.77841 -37.98878 -37.24978 -34.76647 -34.10225 -33.32201 -32.19663 -31.37999 -29.38867 -27.71035 -26.05553 -24.87482 -23.94253 -23.11927 -22.71623 -21.86221 -21.22027 -20.56048 -19.70081 -18.09628 -17.98962 -16.98830 -16.89165 -15.79632 -15.64071 -15.25816 -15.18048 -14.67665 -14.48778 -14.37960 -14.12670 -13.78887 -13.72294 -13.43156 -13.34428 -12.63148 -12.48153 -12.39579 -12.04132 -11.94627 -11.90244 -11.74120 -11.46024 -11.26607 -11.15400 -10.92410 -10.86166 -10.74498 -10.58484 -10.32013 -10.16909 -9.81600 -9.77697 -9.62472 -9.56491 -9.46895 -8.97362 -8.54319 -6.99556 -5.94344 -3.30817 0.16288 0.74621 2.71723 3.06341 3.32136 3.35531 3.37547 3.46797 3.49572 3.65680 3.84759 4.17806 4.45532 4.49661 4.54273 4.61747 4.65573 4.72378 4.90423 4.98454 5.01286 5.07674 5.19290 5.28842 5.42321 5.44120 5.46207 5.68803 5.71475 5.75945 5.77774 5.83501 5.86719 5.96772 5.97806 6.05910 6.21288 6.26310 6.44174 6.44791 6.53685 6.58997 6.60865 6.71432 6.89429 7.50742 7.71202 7.95093 8.23400 8.33577 8.92850 9.72180 10.07468 11.21450 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.003403 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.344829 B = 8225.696947 C = 9330.356694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.127 4.127 5 C 0.145 3.855 6 N -0.600 5.600 7 C -0.264 4.264 8 H 0.087 0.913 9 C 0.029 3.971 10 N -0.903 5.903 11 Si 0.879 3.121 12 H -0.288 1.288 13 H -0.302 1.302 14 H -0.272 1.272 15 C 0.119 3.881 16 C 0.132 3.868 17 H 0.095 0.905 18 N -0.715 5.715 19 C 0.561 3.439 20 O -0.515 6.515 21 C -0.241 4.241 22 C 0.185 3.815 23 N -0.520 5.520 24 C 0.363 3.637 25 C -0.107 4.107 26 C -0.152 4.152 27 C -0.153 4.153 28 N -0.516 5.516 29 C 0.212 3.788 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.024 0.976 39 H 0.080 0.920 40 H 0.392 0.608 41 H 0.172 0.828 42 H 0.132 0.868 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.941 14.959 7.972 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.166 4.166 5 C 0.019 3.981 6 N -0.324 5.324 7 C -0.392 4.392 8 H 0.105 0.895 9 C -0.171 4.171 10 N -0.545 5.545 11 Si 0.710 3.290 12 H -0.216 1.216 13 H -0.231 1.231 14 H -0.197 1.197 15 C -0.008 4.008 16 C 0.027 3.973 17 H 0.113 0.887 18 N -0.367 5.367 19 C 0.345 3.655 20 O -0.390 6.390 21 C -0.248 4.248 22 C 0.018 3.982 23 N -0.233 5.233 24 C 0.097 3.903 25 C -0.127 4.127 26 C -0.190 4.190 27 C -0.192 4.192 28 N -0.228 5.228 29 C 0.045 3.955 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.098 0.902 40 H 0.227 0.773 41 H 0.189 0.811 42 H 0.150 0.850 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.906 14.409 8.870 23.919 hybrid contribution 0.571 0.704 -0.076 0.910 sum -16.335 15.113 8.794 23.928 Atomic orbital electron populations 1.21844 0.95461 1.01936 1.00940 1.21317 0.95086 0.99630 0.95137 0.91254 1.22075 0.98544 1.00557 0.95464 1.20996 0.91037 0.96655 0.89433 1.44275 1.48536 1.40502 0.99043 1.18885 1.09579 1.03031 1.07686 0.89500 1.25257 0.97317 0.96535 0.97963 1.69832 1.32353 1.21890 1.30453 0.86991 0.76332 0.84823 0.80889 1.21572 1.23069 1.19673 1.21708 0.90773 0.97235 0.91044 1.21893 0.96257 0.97494 0.81628 0.88660 1.46014 1.66068 1.14023 1.10564 1.17744 0.78606 0.86606 0.82509 1.90880 1.48642 1.15357 1.84143 1.21919 1.07665 0.97259 0.98003 1.23419 0.87462 0.90820 0.96538 1.68119 1.16099 1.39650 0.99460 1.22382 0.89037 0.86734 0.92127 1.20700 1.06131 0.90922 0.94958 1.23057 0.96855 0.95687 1.03358 1.23017 0.96336 0.98758 1.01050 1.68289 1.13343 1.09819 1.31391 1.23572 0.85690 1.00654 0.85570 0.93267 0.92744 0.92606 0.91540 0.92029 0.91561 0.95884 0.92710 0.95806 0.90224 0.77345 0.81126 0.85043 0.87082 0.88018 0.87707 0.88437 0.79819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.02 37.16 0.34 -1.26 16 2 C -0.09 -1.27 2.27 -90.58 -0.21 -1.48 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.89 5.36 -26.61 -0.14 -2.04 16 5 C 0.14 2.70 6.52 -3.71 -0.02 2.68 16 6 N -0.60 -14.14 2.77 -172.32 -0.48 -14.62 16 7 C -0.26 -7.44 10.03 -15.06 -0.15 -7.60 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.03 0.86 5.23 -17.43 -0.09 0.76 16 10 N -0.90 -28.39 13.97 55.49 0.78 -27.61 16 11 Si 0.88 23.15 24.35 -169.99 -4.14 19.01 16 12 H -0.29 -7.61 6.62 56.52 0.37 -7.24 16 13 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 14 H -0.27 -6.89 6.64 56.52 0.38 -6.51 16 15 C 0.12 2.62 3.78 -3.71 -0.01 2.60 16 16 C 0.13 2.29 2.06 -67.81 -0.14 2.15 16 17 H 0.10 1.92 7.58 -51.93 -0.39 1.53 16 18 N -0.72 -10.17 4.32 -54.63 -0.24 -10.40 16 19 C 0.56 9.03 7.75 -12.34 -0.10 8.94 16 20 O -0.51 -10.65 16.11 5.31 0.09 -10.57 16 21 C -0.24 -3.18 5.91 -104.69 -0.62 -3.80 16 22 C 0.19 2.01 10.81 -16.78 -0.18 1.83 16 23 N -0.52 -5.94 9.32 -10.39 -0.10 -6.04 16 24 C 0.36 4.30 7.31 -157.06 -1.15 3.15 16 25 C -0.11 -0.95 6.23 -91.77 -0.57 -1.53 16 26 C -0.15 -1.07 10.01 -26.69 -0.27 -1.33 16 27 C -0.15 -1.13 10.24 -26.69 -0.27 -1.40 16 28 N -0.52 -6.76 10.31 -10.39 -0.11 -6.87 16 29 C 0.21 2.85 10.88 -16.78 -0.18 2.66 16 30 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 38 H 0.02 0.51 7.08 -51.93 -0.37 0.15 16 39 H 0.08 2.06 4.50 -51.93 -0.23 1.82 16 40 H 0.39 4.05 6.45 -40.82 -0.26 3.79 16 41 H 0.17 1.27 6.54 -52.49 -0.34 0.93 16 42 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.11 0.87 7.53 -51.93 -0.39 0.48 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.18 2.36 7.74 -52.48 -0.41 1.95 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -34.85 375.41 -9.34 -44.20 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.03 Total: 2.91 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -3.77 Total: 4.34 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.14 Total: -65.55 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.14 Total: 19.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.85 -9.34 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.399 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds