Wall clock time and date at job start Tue Mar 31 2020 17:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.46357 * 2 1 4 4 C 1.53044 * 109.44877 * 240.02914 * 2 1 3 5 5 C 1.53193 * 109.31327 * 178.62071 * 4 2 1 6 6 N 1.46931 * 108.77154 * 54.64015 * 5 4 2 7 7 C 1.36936 * 120.63222 * 126.41425 * 6 5 4 8 8 H 1.07997 * 119.99788 * 332.60067 * 7 6 5 9 9 C 1.38812 * 120.00188 * 152.59583 * 7 6 5 10 10 N 1.31621 * 119.99767 * 159.35052 * 9 7 6 11 11 Si 1.86800 * 120.00237 * 339.35978 * 9 7 6 12 12 H 1.48499 * 109.47027 * 92.91500 * 11 9 7 13 13 H 1.48500 * 109.47281 * 212.91864 * 11 9 7 14 14 H 1.48507 * 109.46980 * 332.92090 * 11 9 7 15 15 C 1.46928 * 118.73979 * 306.38621 * 6 5 4 16 16 C 1.53037 * 109.45900 * 119.97212 * 2 1 3 17 17 H 1.09005 * 109.50008 * 61.38418 * 16 2 1 18 18 N 1.46505 * 109.49896 * 301.31941 * 16 2 1 19 19 C 1.34770 * 119.99876 * 154.99504 * 18 16 2 20 20 O 1.21559 * 120.00658 * 0.02562 * 19 18 16 21 21 C 1.47838 * 119.99847 * 179.72586 * 19 18 16 22 22 C 1.39948 * 120.93802 * 0.02562 * 21 19 18 23 23 N 1.32141 * 118.92519 * 179.76331 * 22 21 19 24 24 C 1.31877 * 120.96294 * 0.52044 * 23 22 21 25 25 C 1.50701 * 118.94843 * 179.75121 * 24 23 22 26 26 C 1.52999 * 117.50365 * 8.72195 * 25 24 23 27 27 C 1.53001 * 117.50050 * 300.05950 * 25 24 23 28 28 N 1.31863 * 122.09863 * 359.72744 * 24 23 22 29 29 C 1.32145 * 120.96496 * 359.97438 * 28 24 23 30 30 H 1.08998 * 109.47021 * 300.03305 * 1 2 3 31 31 H 1.09001 * 109.47076 * 60.02731 * 1 2 3 32 32 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50255 * 298.57381 * 4 2 1 34 34 H 1.08999 * 109.49868 * 58.67617 * 4 2 1 35 35 H 1.09002 * 109.59064 * 174.42340 * 5 4 2 36 36 H 1.08996 * 109.59115 * 294.70968 * 5 4 2 37 37 H 0.97006 * 119.99502 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58970 * 293.82890 * 15 6 5 39 39 H 1.08996 * 109.58788 * 173.39489 * 15 6 5 40 40 H 0.96995 * 119.99759 * 335.00863 * 18 16 2 41 41 H 1.08001 * 120.53282 * 359.97438 * 22 21 19 42 42 H 1.09004 * 115.54778 * 154.39521 * 25 24 23 43 43 H 1.09006 * 117.49262 * 0.02562 * 26 25 24 44 44 H 1.09000 * 117.50327 * 145.01768 * 26 25 24 45 45 H 1.08992 * 117.50363 * 214.98342 * 27 25 24 46 46 H 1.09003 * 117.49849 * 0.02562 * 27 25 24 47 47 H 1.08004 * 120.53942 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7209 -1.2501 5 6 3.5711 -0.6890 -1.2645 6 7 4.0675 -1.2495 -0.0003 7 6 4.9759 -2.2742 -0.0003 8 1 5.0120 -2.9636 -0.8308 9 6 5.8502 -2.4268 1.0670 10 7 6.4267 -3.5899 1.2843 11 14 6.2085 -0.9815 2.1949 12 1 5.2796 -1.0154 3.3531 13 1 7.6090 -1.0681 2.6808 14 1 6.0214 0.2880 1.4474 15 6 3.5713 -0.6891 1.2641 16 6 2.0398 -0.7209 1.2500 17 1 1.6970 -1.7556 1.2386 18 7 1.5258 -0.0487 2.4460 19 6 1.3972 -0.7322 3.6003 20 8 1.7081 -1.9064 3.6494 21 6 0.8843 -0.0524 4.8088 22 6 0.5260 1.3001 4.7760 23 7 0.0676 1.8667 5.8782 24 6 -0.0442 1.1796 6.9983 25 6 -0.5672 1.8727 8.2301 26 6 -1.1319 3.2845 8.0604 27 6 0.2190 3.0779 8.7501 28 7 0.2866 -0.0946 7.0747 29 6 0.7483 -0.7416 6.0191 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6973 -1.7557 -1.2384 34 1 1.6570 -0.2208 -2.1399 35 1 3.9412 -1.2851 -2.0987 36 1 3.9142 0.3401 -1.3702 37 1 7.0374 -3.6966 2.0304 38 1 3.9144 0.3403 1.3671 39 1 3.9415 -1.2851 2.0982 40 1 1.2779 0.8882 2.4069 41 1 0.6194 1.8705 3.8637 42 1 -1.0425 1.2258 8.9674 43 1 -1.1255 3.7119 7.0576 44 1 -1.9786 3.5666 8.6862 45 1 0.2605 3.2242 9.8293 46 1 1.1142 3.3698 8.2010 47 1 1.0168 -1.7854 6.0893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968395720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:37 Heat of formation + Delta-G solvation = 39.973857 kcal Electronic energy + Delta-G solvation = -28517.933551 eV Core-core repulsion = 24701.387927 eV Total energy + Delta-G solvation = -3816.545624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53094 -41.07125 -39.37520 -37.96744 -36.32831 -35.22685 -34.66504 -33.40815 -33.15894 -30.78311 -29.19510 -27.07934 -25.83097 -25.66853 -24.47524 -23.25006 -22.94952 -22.54669 -21.78830 -21.07985 -19.20759 -18.97887 -18.85587 -17.87938 -17.37578 -16.90486 -16.56023 -16.16445 -16.00490 -15.79260 -15.54762 -15.23718 -15.16649 -15.08547 -14.79013 -14.56866 -14.39298 -13.88429 -13.52304 -13.38027 -13.33571 -12.89657 -12.77356 -12.59058 -12.37677 -12.36027 -12.23997 -12.12583 -11.95362 -11.76357 -11.69060 -11.53842 -11.43460 -11.29597 -11.07420 -10.85094 -10.56371 -10.49733 -10.21858 -8.95601 -8.22781 -5.53243 -0.81635 -0.19250 1.22686 1.28367 1.38483 1.57914 1.85311 2.35615 2.43767 2.56301 2.78374 3.00535 3.09634 3.24095 3.34181 3.51296 3.65337 3.78228 3.83336 3.89801 3.94670 4.01144 4.06801 4.28057 4.30166 4.35277 4.55661 4.57591 4.68017 4.78534 4.79792 4.86346 4.89653 4.92855 5.00989 5.04750 5.09330 5.15145 5.16979 5.17792 5.30867 5.32524 5.42185 5.58070 5.64130 5.82982 6.08101 6.34952 6.78037 6.86981 7.04697 7.58228 7.97012 8.97159 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.003403 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.344829 B = 8225.696947 C = 9330.356694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.097 0.903 4 C -0.119 4.119 5 C 0.136 3.864 6 N -0.617 5.617 7 C -0.246 4.246 8 H 0.056 0.944 9 C -0.035 4.035 10 N -0.955 5.955 11 Si 0.944 3.056 12 H -0.296 1.296 13 H -0.309 1.309 14 H -0.248 1.248 15 C 0.117 3.883 16 C 0.145 3.855 17 H 0.058 0.942 18 N -0.697 5.697 19 C 0.563 3.437 20 O -0.572 6.572 21 C -0.254 4.254 22 C 0.202 3.798 23 N -0.520 5.520 24 C 0.359 3.641 25 C -0.129 4.129 26 C -0.136 4.136 27 C -0.147 4.147 28 N -0.533 5.533 29 C 0.203 3.797 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.260 0.740 38 H 0.040 0.960 39 H 0.034 0.966 40 H 0.416 0.584 41 H 0.211 0.789 42 H 0.139 0.861 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.086 0.914 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.571 19.746 7.906 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.115 0.885 4 C -0.158 4.158 5 C 0.012 3.988 6 N -0.341 5.341 7 C -0.376 4.376 8 H 0.074 0.926 9 C -0.230 4.230 10 N -0.601 5.601 11 Si 0.774 3.226 12 H -0.224 1.224 13 H -0.238 1.238 14 H -0.172 1.172 15 C -0.009 4.009 16 C 0.038 3.962 17 H 0.076 0.924 18 N -0.350 5.350 19 C 0.349 3.651 20 O -0.452 6.452 21 C -0.262 4.262 22 C 0.035 3.965 23 N -0.233 5.233 24 C 0.095 3.905 25 C -0.149 4.149 26 C -0.173 4.173 27 C -0.185 4.185 28 N -0.246 5.246 29 C 0.036 3.964 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.255 0.745 41 H 0.228 0.772 42 H 0.157 0.843 43 H 0.123 0.877 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.105 0.895 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.594 19.295 8.778 28.867 hybrid contribution 1.307 -0.790 -0.077 1.529 sum -18.288 18.505 8.701 27.433 Atomic orbital electron populations 1.21793 0.92817 1.01700 1.03189 1.21317 0.97138 0.99968 0.91909 0.88520 1.21997 0.95436 1.00355 0.98036 1.21270 0.93670 0.97140 0.86691 1.44424 1.48142 1.40023 1.01547 1.18880 1.09514 1.03203 1.05959 0.92611 1.25903 0.98175 0.98676 1.00264 1.69969 1.34327 1.23954 1.31892 0.85941 0.75155 0.82608 0.78911 1.22420 1.23791 1.17210 1.21671 0.93921 0.96587 0.88735 1.21467 0.93134 0.96924 0.84634 0.92388 1.45730 1.65078 1.15008 1.09168 1.18148 0.77484 0.85969 0.83468 1.90862 1.51208 1.18037 1.85061 1.21629 1.09689 0.98406 0.96492 1.23979 0.85199 0.89673 0.97675 1.68279 1.16391 1.39204 0.99472 1.23044 0.87760 0.86410 0.93306 1.20902 1.07776 0.91875 0.94389 1.23145 0.97407 0.93370 1.03415 1.23104 0.96136 0.97042 1.02215 1.68350 1.14284 1.10740 1.31214 1.23575 0.85825 1.00742 0.86219 0.91468 0.90066 0.94173 0.93543 0.87844 0.92518 0.93572 0.93143 0.94226 0.94731 0.74503 0.77238 0.84301 0.87714 0.85675 0.85661 0.89534 0.80629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.02 71.98 0.65 -1.77 16 2 C -0.08 -1.99 2.27 -10.77 -0.02 -2.01 16 3 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.12 -3.19 5.36 30.67 0.16 -3.03 16 5 C 0.14 4.84 6.52 86.36 0.56 5.40 16 6 N -0.62 -29.05 2.77 -699.09 -1.94 -30.99 16 7 C -0.25 -14.39 10.03 84.03 0.84 -13.55 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 C -0.04 -2.18 5.23 84.86 0.44 -1.74 16 10 N -0.96 -63.33 13.97 21.65 0.30 -63.03 16 11 Si 0.94 49.60 24.35 68.60 1.67 51.27 16 12 H -0.30 -15.78 6.62 99.48 0.66 -15.12 16 13 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 14 H -0.25 -11.89 6.64 99.48 0.66 -11.23 16 15 C 0.12 5.07 3.78 86.36 0.33 5.39 16 16 C 0.14 4.82 2.06 45.07 0.09 4.92 16 17 H 0.06 2.40 7.58 -2.38 -0.02 2.38 16 18 N -0.70 -18.36 4.32 -445.03 -1.92 -20.28 16 19 C 0.56 18.03 7.75 86.79 0.67 18.71 16 20 O -0.57 -24.91 16.11 -3.90 -0.06 -24.97 16 21 C -0.25 -6.50 5.91 -19.91 -0.12 -6.62 16 22 C 0.20 3.79 10.81 85.06 0.92 4.71 16 23 N -0.52 -10.52 9.32 -186.80 -1.74 -12.26 16 24 C 0.36 7.94 7.31 138.71 1.01 8.96 16 25 C -0.13 -2.03 6.23 -11.54 -0.07 -2.10 16 26 C -0.14 -1.47 10.01 30.62 0.31 -1.17 16 27 C -0.15 -1.76 10.24 30.62 0.31 -1.45 16 28 N -0.53 -13.80 10.31 -186.79 -1.93 -15.73 16 29 C 0.20 5.55 10.88 85.06 0.93 6.47 16 30 H 0.07 0.96 7.36 -2.39 -0.02 0.94 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.08 7.93 -2.39 -0.02 2.07 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.26 16.47 8.31 -92.70 -0.77 15.70 16 38 H 0.04 1.59 7.08 -2.39 -0.02 1.57 16 39 H 0.03 1.82 4.50 -2.39 -0.01 1.81 16 40 H 0.42 6.78 6.45 -92.71 -0.60 6.18 16 41 H 0.21 2.06 6.54 -2.91 -0.02 2.04 16 42 H 0.14 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.10 1.31 7.53 -2.38 -0.02 1.29 16 44 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.18 4.90 7.74 -2.91 -0.02 4.88 16 Total: -1.00 -82.77 375.41 1.70 -81.07 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.30 Total: 13.79 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 7.02 Total: 21.13 kcal Atomic # 7 Polarization: -135.06 SS G_CDS: -7.23 Total: -142.29 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.06 Total: -24.97 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.67 Total: 51.27 kcal Total: -82.77 1.70 -81.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.048 kcal (2) G-P(sol) polarization free energy of solvation -82.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds