Wall clock time and date at job start Tue Mar 31 2020 17:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.70314 * 2 1 4 4 C 1.53193 * 109.58805 * 120.35941 * 2 1 3 5 5 H 1.08994 * 109.52476 * 294.38753 * 4 2 1 6 6 N 1.46499 * 109.49803 * 54.46974 * 4 2 1 7 7 C 1.34781 * 119.99983 * 204.83778 * 6 4 2 8 8 O 1.21281 * 119.99963 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99887 * 179.97438 * 7 6 4 10 10 C 1.52996 * 109.47204 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47468 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46923 * 60.00347 * 11 10 9 13 13 F 1.39894 * 109.47366 * 59.99763 * 12 11 10 14 14 F 1.39900 * 109.46925 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.46929 * 299.99723 * 12 11 10 16 16 C 1.52998 * 109.46785 * 60.00153 * 15 12 11 17 17 C 1.53035 * 109.31403 * 174.42089 * 4 2 1 18 18 C 1.53044 * 109.54002 * 298.63696 * 17 4 2 19 19 C 1.53186 * 109.31387 * 61.36112 * 18 17 4 20 20 N 1.46928 * 108.77794 * 305.36928 * 19 18 17 21 21 C 1.36939 * 120.62802 * 233.61101 * 20 19 18 22 22 H 1.07996 * 119.99681 * 150.16870 * 21 20 19 23 23 C 1.38809 * 120.00101 * 330.16162 * 21 20 19 24 24 N 1.31619 * 120.00439 * 344.49588 * 23 21 20 25 25 Si 1.86801 * 119.99843 * 164.49223 * 23 21 20 26 26 H 1.48497 * 109.47267 * 90.00263 * 25 23 21 27 27 H 1.48509 * 109.46940 * 210.00524 * 25 23 21 28 28 H 1.48505 * 109.47135 * 330.00073 * 25 23 21 29 29 H 1.08998 * 109.46629 * 299.63849 * 1 2 3 30 30 H 1.08993 * 109.46789 * 59.64418 * 1 2 3 31 31 H 1.09002 * 109.46977 * 179.64362 * 1 2 3 32 32 H 0.97002 * 120.00252 * 24.84003 * 6 4 2 33 33 H 1.08999 * 109.47493 * 300.00657 * 9 7 6 34 34 H 1.08999 * 109.46818 * 60.00087 * 10 9 7 35 35 H 1.09000 * 109.46908 * 300.00353 * 10 9 7 36 36 H 1.08999 * 109.47345 * 300.00632 * 11 10 9 37 37 H 1.09000 * 109.47504 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46982 * 180.02562 * 15 12 11 39 39 H 1.09000 * 109.47120 * 300.00147 * 15 12 11 40 40 H 1.09000 * 109.47198 * 180.02562 * 16 15 12 41 41 H 1.09000 * 109.47296 * 60.00102 * 16 15 12 42 42 H 1.09002 * 109.46278 * 58.65243 * 17 4 2 43 43 H 1.08996 * 109.46316 * 178.61355 * 17 4 2 44 44 H 1.09005 * 109.49802 * 181.31784 * 18 17 4 45 45 H 1.09001 * 109.49404 * 301.41246 * 18 17 4 46 46 H 1.09004 * 109.58615 * 65.15415 * 19 18 17 47 47 H 1.09001 * 109.59031 * 185.58002 * 19 18 17 48 48 H 0.96991 * 120.00651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.7661 -0.1675 2.1371 6 7 1.4515 -2.0680 1.3070 7 6 1.3315 -2.6979 2.4925 8 8 1.7133 -2.1564 3.5083 9 6 0.7218 -4.0746 2.5560 10 6 0.7036 -4.5578 4.0075 11 6 0.0852 -5.9558 4.0719 12 6 0.9163 -6.9206 3.2236 13 9 2.2248 -6.9663 3.7164 14 9 0.3505 -8.1988 3.2821 15 6 0.9345 -6.4374 1.7720 16 6 1.5528 -5.0394 1.7077 17 6 3.5675 -0.8481 1.1701 18 6 3.9570 -1.6657 -0.0637 19 6 3.4651 -0.9469 -1.3238 20 7 2.0225 -0.6995 -1.1945 21 6 1.1537 -1.1131 -2.1689 22 1 0.1398 -1.3801 -1.9102 23 6 1.5762 -1.1889 -3.4889 24 7 2.6868 -0.5879 -3.8601 25 14 0.5684 -2.1439 -4.7387 26 1 -0.4255 -1.2384 -5.3691 27 1 1.4687 -2.6949 -5.7834 28 1 -0.1389 -3.2577 -4.0571 29 1 -0.3632 0.5082 0.8932 30 1 -0.3632 0.5193 -0.8867 31 1 -0.3633 -1.0277 -0.0064 32 1 1.1457 -2.5011 0.4946 33 1 -0.2978 -4.0385 2.1725 34 1 0.1119 -3.8703 4.6119 35 1 1.7231 -4.5939 4.3913 36 1 -0.9343 -5.9202 3.6879 37 1 0.0726 -6.3003 5.1060 38 1 1.5261 -7.1250 1.1676 39 1 -0.0851 -6.4018 1.3881 40 1 1.5654 -4.6949 0.6736 41 1 2.5723 -5.0750 2.0916 42 1 4.0062 0.1472 1.0992 43 1 3.9379 -1.3449 2.0667 44 1 5.0413 -1.7696 -0.1038 45 1 3.4983 -2.6528 -0.0055 46 1 3.9903 0.0021 -1.4317 47 1 3.6518 -1.5716 -2.1973 48 1 2.9822 -0.6412 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993862201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:12 Heat of formation + Delta-G solvation = -141.911164 kcal Electronic energy + Delta-G solvation = -30744.331955 eV Core-core repulsion = 26469.210018 eV Total energy + Delta-G solvation = -4275.121937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.10557 -47.09257 -40.13331 -38.16678 -36.76158 -33.99179 -32.49758 -31.86954 -31.25729 -30.51068 -29.13793 -26.31170 -25.06657 -23.80126 -23.34459 -21.99491 -20.93444 -20.64765 -19.77413 -18.75445 -17.59435 -17.04681 -16.98771 -16.46024 -16.40118 -15.45195 -15.02458 -14.92952 -14.29969 -14.24107 -14.09042 -13.91518 -13.67073 -13.45823 -13.35095 -13.17495 -13.07851 -12.93475 -12.67110 -12.56337 -12.34581 -11.93089 -11.86636 -11.72198 -11.44593 -11.30620 -11.26791 -11.03485 -10.88139 -10.74138 -10.67059 -10.56516 -10.32446 -10.16724 -10.06009 -9.71088 -9.43956 -9.33875 -8.59245 -8.48073 -6.72246 -5.87037 -3.32721 2.90703 3.29510 3.36708 3.38183 3.51679 3.57963 3.87464 4.15529 4.20281 4.39545 4.62055 4.72908 4.85948 4.97040 5.02461 5.15693 5.25925 5.27982 5.39453 5.46729 5.54079 5.55465 5.56115 5.60535 5.71199 5.77283 5.81350 5.92701 5.99843 6.07963 6.12729 6.18294 6.29690 6.37783 6.49728 6.63829 6.64098 6.74328 6.90064 6.92335 7.07823 7.32805 7.60814 7.71897 7.98881 8.36417 8.59335 9.12360 9.75451 10.33153 11.20926 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.003934 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.575927 B = 7116.057897 C = 8154.734768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.134 3.866 5 H 0.075 0.925 6 N -0.699 5.699 7 C 0.514 3.486 8 O -0.554 6.554 9 C -0.112 4.112 10 C -0.097 4.097 11 C -0.157 4.157 12 C 0.286 3.714 13 F -0.198 7.198 14 F -0.205 7.205 15 C -0.155 4.155 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.139 4.139 19 C 0.172 3.828 20 N -0.585 5.585 21 C -0.258 4.258 22 H 0.069 0.931 23 C 0.008 3.992 24 N -0.898 5.898 25 Si 0.898 3.102 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.408 0.592 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.085 0.915 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -8.866 12.046 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.027 3.973 5 H 0.093 0.907 6 N -0.349 5.349 7 C 0.300 3.700 8 O -0.432 6.432 9 C -0.133 4.133 10 C -0.135 4.135 11 C -0.195 4.195 12 C 0.250 3.750 13 F -0.179 7.179 14 F -0.186 7.186 15 C -0.193 4.193 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.179 4.179 19 C 0.046 3.954 20 N -0.309 5.309 21 C -0.387 4.387 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.542 5.542 25 Si 0.728 3.272 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.245 0.755 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.036 0.964 47 H 0.103 0.897 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.848 -8.481 12.573 15.646 hybrid contribution -0.453 -0.804 -1.172 1.492 sum -4.300 -9.285 11.401 15.320 Atomic orbital electron populations 1.21774 0.95671 1.01389 1.00405 1.20725 0.93315 0.93930 0.86878 0.94393 1.21526 0.92895 0.83159 0.99686 0.90708 1.46027 1.61298 1.18533 1.09083 1.20349 0.78913 0.86989 0.83780 1.90658 1.50404 1.67602 1.34568 1.21410 1.01193 0.93079 0.97647 1.21295 1.03109 0.93768 0.95321 1.22552 1.00278 0.95470 1.01200 1.21179 0.77386 0.80110 0.96344 1.92999 1.38858 1.96573 1.89518 1.93000 1.85058 1.43067 1.97502 1.22513 1.04801 0.98814 0.93211 1.21521 0.99867 0.92151 1.01446 1.21762 0.95538 1.00423 0.98208 1.22136 0.98911 0.99527 0.97294 1.20784 0.83183 0.97137 0.94262 1.44155 1.03080 1.64884 1.18812 1.19108 0.95159 1.38286 0.86145 0.91296 1.25102 0.97739 0.99336 0.96995 1.70016 1.23959 1.43462 1.16757 0.86379 0.79433 0.79935 0.81430 1.21443 1.21655 1.20500 0.94248 0.91819 0.92819 0.75536 0.88240 0.89747 0.90127 0.88714 0.89317 0.89066 0.88462 0.89255 0.90256 0.92015 0.93155 0.93512 0.92856 0.96442 0.89683 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.73 37.16 0.29 -2.03 16 2 C 0.16 3.00 3.20 -67.60 -0.22 2.78 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.13 2.26 2.32 -67.81 -0.16 2.11 16 5 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 6 N -0.70 -10.69 3.36 -53.69 -0.18 -10.87 16 7 C 0.51 7.56 7.12 -10.99 -0.08 7.48 16 8 O -0.55 -9.89 15.65 5.56 0.09 -9.81 16 9 C -0.11 -1.23 2.53 -91.77 -0.23 -1.46 16 10 C -0.10 -1.01 4.37 -26.73 -0.12 -1.13 16 11 C -0.16 -1.36 5.45 -26.73 -0.15 -1.50 16 12 C 0.29 2.93 2.10 -26.72 -0.06 2.88 16 13 F -0.20 -2.46 16.02 2.25 0.04 -2.42 16 14 F -0.21 -2.33 17.06 2.25 0.04 -2.29 16 15 C -0.16 -1.42 5.45 -26.73 -0.15 -1.57 16 16 C -0.11 -1.17 4.98 -26.73 -0.13 -1.31 16 17 C -0.12 -2.07 5.58 -26.69 -0.15 -2.22 16 18 C -0.14 -2.53 5.93 -26.61 -0.16 -2.69 16 19 C 0.17 3.78 5.28 -3.71 -0.02 3.76 16 20 N -0.59 -12.86 2.64 -164.77 -0.44 -13.30 16 21 C -0.26 -6.19 8.58 -15.06 -0.13 -6.32 16 22 H 0.07 1.60 6.23 -52.49 -0.33 1.27 16 23 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 24 N -0.90 -24.46 11.23 55.49 0.62 -23.84 16 25 Si 0.90 20.14 29.58 -169.99 -5.03 15.12 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.19 7.67 -51.93 -0.40 0.79 16 31 H 0.05 0.89 6.37 -51.93 -0.33 0.56 16 32 H 0.41 6.33 7.18 -40.82 -0.29 6.03 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.96 7.56 -51.93 -0.39 0.56 16 41 H 0.08 0.93 7.80 -51.93 -0.41 0.52 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.96 7.53 -51.93 -0.39 0.57 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 2.11 6.15 -51.93 -0.32 1.79 16 48 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -28.21 370.22 -8.68 -36.88 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.86 Total: 6.04 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.54 Total: -1.10 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.01 Total: -48.01 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.07 Total: -4.71 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.21 -8.68 -36.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993862201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.027 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds