Wall clock time and date at job start Tue Mar 31 2020 17:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.70314 * 2 1 4 4 C 1.53193 * 109.58805 * 120.35941 * 2 1 3 5 5 H 1.08994 * 109.52476 * 294.38753 * 4 2 1 6 6 N 1.46499 * 109.49803 * 54.46974 * 4 2 1 7 7 C 1.34781 * 119.99983 * 204.83778 * 6 4 2 8 8 O 1.21281 * 119.99963 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99887 * 179.97438 * 7 6 4 10 10 C 1.52996 * 109.47204 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47468 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46923 * 60.00347 * 11 10 9 13 13 F 1.39894 * 109.47366 * 59.99763 * 12 11 10 14 14 F 1.39900 * 109.46925 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.46929 * 299.99723 * 12 11 10 16 16 C 1.52998 * 109.46785 * 60.00153 * 15 12 11 17 17 C 1.53035 * 109.31403 * 174.42089 * 4 2 1 18 18 C 1.53044 * 109.54002 * 298.63696 * 17 4 2 19 19 C 1.53186 * 109.31387 * 61.36112 * 18 17 4 20 20 N 1.46928 * 108.77794 * 305.36928 * 19 18 17 21 21 C 1.36939 * 120.62802 * 233.61101 * 20 19 18 22 22 H 1.07996 * 119.99681 * 150.16870 * 21 20 19 23 23 C 1.38809 * 120.00101 * 330.16162 * 21 20 19 24 24 N 1.31619 * 120.00439 * 344.49588 * 23 21 20 25 25 Si 1.86801 * 119.99843 * 164.49223 * 23 21 20 26 26 H 1.48497 * 109.47267 * 90.00263 * 25 23 21 27 27 H 1.48509 * 109.46940 * 210.00524 * 25 23 21 28 28 H 1.48505 * 109.47135 * 330.00073 * 25 23 21 29 29 H 1.08998 * 109.46629 * 299.63849 * 1 2 3 30 30 H 1.08993 * 109.46789 * 59.64418 * 1 2 3 31 31 H 1.09002 * 109.46977 * 179.64362 * 1 2 3 32 32 H 0.97002 * 120.00252 * 24.84003 * 6 4 2 33 33 H 1.08999 * 109.47493 * 300.00657 * 9 7 6 34 34 H 1.08999 * 109.46818 * 60.00087 * 10 9 7 35 35 H 1.09000 * 109.46908 * 300.00353 * 10 9 7 36 36 H 1.08999 * 109.47345 * 300.00632 * 11 10 9 37 37 H 1.09000 * 109.47504 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46982 * 180.02562 * 15 12 11 39 39 H 1.09000 * 109.47120 * 300.00147 * 15 12 11 40 40 H 1.09000 * 109.47198 * 180.02562 * 16 15 12 41 41 H 1.09000 * 109.47296 * 60.00102 * 16 15 12 42 42 H 1.09002 * 109.46278 * 58.65243 * 17 4 2 43 43 H 1.08996 * 109.46316 * 178.61355 * 17 4 2 44 44 H 1.09005 * 109.49802 * 181.31784 * 18 17 4 45 45 H 1.09001 * 109.49404 * 301.41246 * 18 17 4 46 46 H 1.09004 * 109.58615 * 65.15415 * 19 18 17 47 47 H 1.09001 * 109.59031 * 185.58002 * 19 18 17 48 48 H 0.96991 * 120.00651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 1 1.7661 -0.1675 2.1371 6 7 1.4515 -2.0680 1.3070 7 6 1.3315 -2.6979 2.4925 8 8 1.7133 -2.1564 3.5083 9 6 0.7218 -4.0746 2.5560 10 6 0.7036 -4.5578 4.0075 11 6 0.0852 -5.9558 4.0719 12 6 0.9163 -6.9206 3.2236 13 9 2.2248 -6.9663 3.7164 14 9 0.3505 -8.1988 3.2821 15 6 0.9345 -6.4374 1.7720 16 6 1.5528 -5.0394 1.7077 17 6 3.5675 -0.8481 1.1701 18 6 3.9570 -1.6657 -0.0637 19 6 3.4651 -0.9469 -1.3238 20 7 2.0225 -0.6995 -1.1945 21 6 1.1537 -1.1131 -2.1689 22 1 0.1398 -1.3801 -1.9102 23 6 1.5762 -1.1889 -3.4889 24 7 2.6868 -0.5879 -3.8601 25 14 0.5684 -2.1439 -4.7387 26 1 -0.4255 -1.2384 -5.3691 27 1 1.4687 -2.6949 -5.7834 28 1 -0.1389 -3.2577 -4.0571 29 1 -0.3632 0.5082 0.8932 30 1 -0.3632 0.5193 -0.8867 31 1 -0.3633 -1.0277 -0.0064 32 1 1.1457 -2.5011 0.4946 33 1 -0.2978 -4.0385 2.1725 34 1 0.1119 -3.8703 4.6119 35 1 1.7231 -4.5939 4.3913 36 1 -0.9343 -5.9202 3.6879 37 1 0.0726 -6.3003 5.1060 38 1 1.5261 -7.1250 1.1676 39 1 -0.0851 -6.4018 1.3881 40 1 1.5654 -4.6949 0.6736 41 1 2.5723 -5.0750 2.0916 42 1 4.0062 0.1472 1.0992 43 1 3.9379 -1.3449 2.0667 44 1 5.0413 -1.7696 -0.1038 45 1 3.4983 -2.6528 -0.0055 46 1 3.9903 0.0021 -1.4317 47 1 3.6518 -1.5716 -2.1973 48 1 2.9822 -0.6412 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993862201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:11 Heat of formation + Delta-G solvation = -155.931489 kcal Electronic energy + Delta-G solvation = -30744.939921 eV Core-core repulsion = 26469.210018 eV Total energy + Delta-G solvation = -4275.729904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.94052 -47.94465 -41.35043 -39.51074 -37.82794 -35.57125 -34.01416 -33.40309 -32.11157 -31.66958 -30.50090 -27.84015 -26.80685 -24.84663 -24.13804 -23.50876 -22.36252 -21.79535 -20.78578 -20.23667 -18.45805 -18.23994 -18.11694 -17.80652 -17.20235 -17.05098 -16.47276 -16.14744 -15.71418 -15.48587 -15.27671 -15.05625 -14.89896 -14.57382 -14.52766 -14.33549 -14.26215 -14.14829 -13.92877 -13.57199 -13.37082 -13.19474 -12.90337 -12.84182 -12.74024 -12.68974 -12.60123 -12.38362 -12.30884 -12.18964 -12.13634 -11.90548 -11.69953 -11.64834 -11.33918 -11.10466 -10.99662 -10.64281 -10.46610 -9.84234 -8.57411 -7.78565 -5.25352 1.51992 1.54993 1.61882 1.75357 2.36311 2.56980 2.82574 3.14018 3.35266 3.38654 3.43337 3.62058 3.80064 3.88888 3.94533 4.08922 4.10648 4.11812 4.23569 4.31653 4.36765 4.42033 4.60835 4.63660 4.68282 4.69678 4.80907 4.83301 4.89024 4.97972 4.98062 5.01509 5.02694 5.07693 5.16241 5.17640 5.25876 5.31396 5.37788 5.50095 5.57906 5.70595 5.78320 5.82828 6.47425 6.76641 7.22594 7.39711 7.92793 8.46854 9.28259 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.003934 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.575927 B = 7116.057897 C = 8154.734768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.025 0.975 4 C 0.144 3.856 5 H 0.077 0.923 6 N -0.696 5.696 7 C 0.515 3.485 8 O -0.585 6.585 9 C -0.104 4.104 10 C -0.092 4.092 11 C -0.149 4.149 12 C 0.277 3.723 13 F -0.215 7.215 14 F -0.211 7.211 15 C -0.151 4.151 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.125 4.125 19 C 0.181 3.819 20 N -0.595 5.595 21 C -0.245 4.245 22 H 0.083 0.917 23 C -0.049 4.049 24 N -0.937 5.937 25 Si 0.957 3.043 26 H -0.293 1.293 27 H -0.304 1.304 28 H -0.261 1.261 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.057 0.943 46 H -0.010 1.010 47 H 0.055 0.945 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 -10.250 13.145 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.043 0.957 4 C 0.037 3.963 5 H 0.095 0.905 6 N -0.347 5.347 7 C 0.302 3.698 8 O -0.466 6.466 9 C -0.125 4.125 10 C -0.130 4.130 11 C -0.187 4.187 12 C 0.242 3.758 13 F -0.197 7.197 14 F -0.192 7.192 15 C -0.188 4.188 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.164 4.164 19 C 0.055 3.945 20 N -0.319 5.319 21 C -0.375 4.375 22 H 0.101 0.899 23 C -0.244 4.244 24 N -0.584 5.584 25 Si 0.786 3.214 26 H -0.220 1.220 27 H -0.231 1.231 28 H -0.185 1.185 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.008 0.992 47 H 0.073 0.927 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.988 -9.884 13.703 17.925 hybrid contribution 0.231 -0.318 -1.442 1.494 sum -5.757 -10.202 12.261 16.957 Atomic orbital electron populations 1.21692 0.94005 1.01984 1.00732 1.20842 0.94681 0.93215 0.86310 0.95712 1.21254 0.92596 0.84050 0.98391 0.90489 1.45975 1.61290 1.17877 1.09530 1.20967 0.78044 0.87993 0.82766 1.90649 1.51725 1.68696 1.35549 1.21440 1.02308 0.90478 0.98306 1.21220 1.02014 0.94980 0.94808 1.22536 1.00995 0.93558 1.01603 1.21518 0.76832 0.80142 0.97349 1.92970 1.40248 1.96641 1.89813 1.92987 1.85052 1.43606 1.97578 1.22514 1.06158 0.97600 0.92561 1.21450 0.99004 0.92984 1.01095 1.21709 0.95915 1.00255 0.97523 1.21941 0.99531 0.99218 0.95686 1.20547 0.83455 0.95572 0.94951 1.44332 1.02824 1.65361 1.19334 1.19485 0.95632 1.36112 0.86251 0.89934 1.25778 0.98853 1.00883 0.98882 1.70181 1.25985 1.45784 1.16422 0.85443 0.77754 0.79065 0.79146 1.22017 1.23099 1.18511 0.91870 0.93583 0.91974 0.75367 0.85349 0.89584 0.92444 0.86088 0.88666 0.88915 0.86026 0.89235 0.92062 0.91991 0.92845 0.92409 0.92406 0.99165 0.92700 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.73 71.98 0.56 -3.52 16 2 C 0.16 5.73 3.20 44.98 0.14 5.87 16 3 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.14 4.65 2.32 45.07 0.10 4.76 16 5 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16 6 N -0.70 -19.81 3.36 -442.18 -1.49 -21.29 16 7 C 0.51 14.03 7.12 87.65 0.62 14.65 16 8 O -0.59 -20.02 15.65 -3.03 -0.05 -20.07 16 9 C -0.10 -1.99 2.53 -11.54 -0.03 -2.01 16 10 C -0.09 -1.71 4.37 30.59 0.13 -1.58 16 11 C -0.15 -2.13 5.45 30.60 0.17 -1.96 16 12 C 0.28 5.04 2.10 30.60 0.06 5.11 16 13 F -0.22 -5.11 16.02 44.97 0.72 -4.39 16 14 F -0.21 -4.29 17.06 44.97 0.77 -3.52 16 15 C -0.15 -2.31 5.45 30.60 0.17 -2.14 16 16 C -0.11 -2.00 4.98 30.60 0.15 -1.85 16 17 C -0.12 -3.83 5.58 30.62 0.17 -3.66 16 18 C -0.12 -4.45 5.93 30.67 0.18 -4.27 16 19 C 0.18 8.07 5.28 86.36 0.46 8.52 16 20 N -0.59 -25.95 2.64 -675.22 -1.78 -27.73 16 21 C -0.24 -11.56 8.58 84.03 0.72 -10.84 16 22 H 0.08 3.64 6.23 -2.91 -0.02 3.62 16 23 C -0.05 -2.48 4.94 84.86 0.42 -2.06 16 24 N -0.94 -52.42 11.23 21.65 0.24 -52.18 16 25 Si 0.96 41.30 29.58 68.60 2.03 43.33 16 26 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 28 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.64 7.67 -2.39 -0.02 1.62 16 31 H 0.06 1.88 6.37 -2.39 -0.02 1.87 16 32 H 0.41 11.63 7.18 -92.71 -0.67 10.97 16 33 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.68 7.56 -2.39 -0.02 1.67 16 41 H 0.06 1.37 7.80 -2.39 -0.02 1.35 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.06 2.01 7.53 -2.39 -0.02 2.00 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.05 2.80 6.15 -2.39 -0.01 2.78 16 48 H 0.24 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -61.57 370.22 4.77 -56.80 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.29 Total: 24.05 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 4.03 Total: 5.01 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.03 Total: -101.21 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.07 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 1.49 Total: -7.91 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -61.57 4.77 -56.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993862201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.130 kcal (2) G-P(sol) polarization free energy of solvation -61.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds