Wall clock time and date at job start Tue Mar 31 2020 17:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.58502 * 2 1 4 4 C 1.53189 * 109.58499 * 239.72010 * 2 1 3 5 5 H 1.08998 * 109.49864 * 65.59380 * 4 2 1 6 6 N 1.46502 * 109.49791 * 305.53061 * 4 2 1 7 7 C 1.34778 * 120.00239 * 155.00540 * 6 4 2 8 8 O 1.21280 * 120.00024 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99928 * 179.97438 * 7 6 4 10 10 C 1.52997 * 109.47240 * 299.99044 * 9 7 6 11 11 C 1.53002 * 109.47387 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46635 * 60.00584 * 11 10 9 13 13 F 1.39907 * 109.47029 * 180.02562 * 12 11 10 14 14 F 1.39896 * 109.47420 * 59.99887 * 12 11 10 15 15 C 1.53005 * 109.46984 * 299.99733 * 12 11 10 16 16 C 1.52994 * 109.46789 * 60.00509 * 15 12 11 17 17 C 1.53039 * 109.31577 * 185.57897 * 4 2 1 18 18 C 1.53044 * 109.53858 * 61.36080 * 17 4 2 19 19 C 1.53197 * 109.31442 * 298.64057 * 18 17 4 20 20 N 1.46925 * 108.77491 * 54.63277 * 19 18 17 21 21 C 1.36936 * 120.62978 * 126.39193 * 20 19 18 22 22 H 1.07998 * 119.99766 * 209.00844 * 21 20 19 23 23 C 1.38809 * 119.99901 * 29.00783 * 21 20 19 24 24 N 1.31617 * 120.00017 * 15.03305 * 23 21 20 25 25 Si 1.86798 * 119.99825 * 195.02477 * 23 21 20 26 26 H 1.48503 * 109.46653 * 90.00545 * 25 23 21 27 27 H 1.48503 * 109.47424 * 209.99786 * 25 23 21 28 28 H 1.48493 * 109.47527 * 330.00449 * 25 23 21 29 29 H 1.09004 * 109.47172 * 180.28494 * 1 2 3 30 30 H 1.09001 * 109.47451 * 60.28147 * 1 2 3 31 31 H 1.09000 * 109.46977 * 300.27983 * 1 2 3 32 32 H 0.97004 * 119.99753 * 334.99767 * 6 4 2 33 33 H 1.08995 * 109.47731 * 59.99419 * 9 7 6 34 34 H 1.08996 * 109.47803 * 300.00691 * 10 9 7 35 35 H 1.09004 * 109.46615 * 60.00663 * 10 9 7 36 36 H 1.08994 * 109.47202 * 300.00542 * 11 10 9 37 37 H 1.09001 * 109.47226 * 180.02562 * 11 10 9 38 38 H 1.08995 * 109.47008 * 299.99903 * 15 12 11 39 39 H 1.09000 * 109.47088 * 180.02562 * 15 12 11 40 40 H 1.09001 * 109.46799 * 179.97438 * 16 15 12 41 41 H 1.08995 * 109.47840 * 59.99904 * 16 15 12 42 42 H 1.08999 * 109.46342 * 181.38487 * 17 4 2 43 43 H 1.09001 * 109.45800 * 301.35802 * 17 4 2 44 44 H 1.08995 * 109.49365 * 58.59189 * 18 17 4 45 45 H 1.09002 * 109.49835 * 178.68478 * 18 17 4 46 46 H 1.08998 * 109.58285 * 174.42152 * 19 18 17 47 47 H 1.08998 * 109.58260 * 294.84803 * 19 18 17 48 48 H 0.96997 * 119.99877 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 -1.2464 5 1 1.7655 -0.1643 -2.1370 6 7 1.4513 -2.0662 -1.3098 7 6 1.3283 -2.6932 -2.4966 8 8 1.7075 -2.1491 -3.5120 9 6 0.7197 -4.0702 -2.5617 10 6 1.5532 -5.0367 -1.7179 11 6 0.9349 -6.4347 -1.7835 12 6 0.9127 -6.9147 -3.2361 13 9 0.3468 -8.1928 -3.2962 14 9 2.2199 -6.9592 -3.7326 15 6 0.0792 -5.9483 -4.0800 16 6 0.6975 -4.5504 -4.0143 17 6 3.5674 -0.8465 -1.1713 18 6 3.9569 -1.6658 0.0613 19 6 3.4650 -0.9487 1.3225 20 7 2.0225 -0.7011 1.1936 21 6 1.1537 -1.1160 2.1673 22 1 0.1360 -1.3700 1.9104 23 6 1.5811 -1.2099 3.4846 24 7 2.7042 -0.6322 3.8549 25 14 0.5621 -2.1562 4.7319 26 1 0.9964 -3.5762 4.7505 27 1 0.7530 -1.5626 6.0797 28 1 -0.8728 -2.0823 4.3571 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3634 0.5094 -0.8925 31 1 -0.3633 0.5182 0.8875 32 1 1.1477 -2.5013 -0.4977 33 1 -0.2989 -4.0360 -2.1752 34 1 2.5717 -5.0710 -2.1044 35 1 1.5686 -4.6949 -0.6830 36 1 -0.0835 -6.4000 -1.3967 37 1 1.5285 -7.1231 -1.1820 38 1 -0.9393 -5.9137 -3.6931 39 1 0.0630 -6.2905 -5.1147 40 1 0.1039 -3.8620 -4.6158 41 1 1.7159 -4.5849 -4.4011 42 1 3.9377 -1.3422 -2.0687 43 1 4.0061 0.1487 -1.0990 44 1 3.4983 -2.6528 0.0017 45 1 5.0412 -1.7698 0.1013 46 1 3.6519 -1.5747 2.1950 47 1 3.9903 0.0001 1.4316 48 1 3.0031 -0.6982 4.7753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993862205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:14 Heat of formation + Delta-G solvation = -155.651228 kcal Electronic energy + Delta-G solvation = -30746.828633 eV Core-core repulsion = 26471.110882 eV Total energy + Delta-G solvation = -4275.717751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.94016 -47.94455 -41.35096 -39.51286 -37.83012 -35.57743 -34.01055 -33.40989 -32.11167 -31.66609 -30.49870 -27.84154 -26.81284 -24.84643 -24.13822 -23.50593 -22.36286 -21.79662 -20.78677 -20.23663 -18.45898 -18.24310 -18.11707 -17.80743 -17.20336 -17.06372 -16.47229 -16.14828 -15.71025 -15.48131 -15.27813 -15.05691 -14.89760 -14.57330 -14.52780 -14.33622 -14.26130 -14.14892 -13.92913 -13.56984 -13.37153 -13.19558 -12.92548 -12.83579 -12.73983 -12.67041 -12.59856 -12.43010 -12.28638 -12.19052 -12.13109 -11.88242 -11.69980 -11.64960 -11.33358 -11.10627 -11.00856 -10.64379 -10.46253 -9.84352 -8.58760 -7.78071 -5.24854 1.52473 1.54823 1.61623 1.75255 2.36245 2.56872 2.82514 3.14005 3.35149 3.38651 3.43229 3.62044 3.80000 3.88788 3.94461 4.08857 4.10569 4.11717 4.23720 4.31539 4.36720 4.42082 4.60645 4.63555 4.68215 4.69632 4.80948 4.83298 4.88998 4.97821 4.97956 5.01624 5.02706 5.07645 5.16231 5.17542 5.25894 5.31370 5.37648 5.49793 5.58825 5.71109 5.78090 5.83744 6.47281 6.76560 7.22597 7.39629 7.92908 8.46334 9.28478 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003938 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.243825 B = 7107.959600 C = 8146.364913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.026 0.974 4 C 0.144 3.856 5 H 0.077 0.923 6 N -0.696 5.696 7 C 0.515 3.485 8 O -0.585 6.585 9 C -0.104 4.104 10 C -0.107 4.107 11 C -0.151 4.151 12 C 0.277 3.723 13 F -0.211 7.211 14 F -0.215 7.215 15 C -0.149 4.149 16 C -0.092 4.092 17 C -0.115 4.115 18 C -0.125 4.125 19 C 0.179 3.821 20 N -0.595 5.595 21 C -0.243 4.243 22 H 0.084 0.916 23 C -0.050 4.050 24 N -0.938 5.938 25 Si 0.958 3.042 26 H -0.287 1.287 27 H -0.308 1.308 28 H -0.265 1.265 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.409 0.591 33 H 0.129 0.871 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.057 0.943 47 H -0.010 1.010 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -10.062 -13.142 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.043 0.957 4 C 0.037 3.963 5 H 0.095 0.905 6 N -0.347 5.347 7 C 0.302 3.698 8 O -0.466 6.466 9 C -0.125 4.125 10 C -0.145 4.145 11 C -0.188 4.188 12 C 0.242 3.758 13 F -0.192 7.192 14 F -0.197 7.197 15 C -0.187 4.187 16 C -0.130 4.130 17 C -0.154 4.154 18 C -0.164 4.164 19 C 0.054 3.946 20 N -0.319 5.319 21 C -0.374 4.374 22 H 0.102 0.898 23 C -0.245 4.245 24 N -0.584 5.584 25 Si 0.788 3.212 26 H -0.214 1.214 27 H -0.235 1.235 28 H -0.189 1.189 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.246 0.754 33 H 0.147 0.853 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.008 0.992 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.090 -9.682 -13.697 17.845 hybrid contribution 0.245 -0.360 1.422 1.487 sum -5.845 -10.042 -12.275 16.903 Atomic orbital electron populations 1.21699 0.94015 1.01982 1.00748 1.20837 0.94677 0.93233 0.86295 0.95657 1.21258 0.92589 0.84058 0.98396 0.90470 1.45974 1.61323 1.17908 1.09467 1.20965 0.78027 0.88009 0.82766 1.90649 1.51794 1.68571 1.35611 1.21438 1.02309 0.90465 0.98315 1.21450 0.98984 0.92980 1.01128 1.22513 1.06167 0.97609 0.92542 1.21519 0.76873 0.80150 0.97299 1.92989 1.85049 1.43616 1.97570 1.92971 1.40374 1.96644 1.89690 1.22534 1.00965 0.93535 1.01659 1.21219 1.02015 0.94998 0.94792 1.21711 0.95917 1.00251 0.97519 1.21945 0.99517 0.99205 0.95730 1.20577 0.83395 0.95645 0.95031 1.44341 1.02854 1.65224 1.19449 1.19520 0.95303 1.36090 0.86438 0.89843 1.25763 0.98823 1.01071 0.98833 1.70181 1.25208 1.46475 1.16582 0.85400 0.79257 0.78287 0.78284 1.21391 1.23550 1.18941 0.91993 0.91857 0.93570 0.75369 0.85331 0.92081 0.89238 0.85998 0.88932 0.86081 0.88665 0.89581 0.92451 0.92863 0.91979 0.92454 0.92439 0.92447 0.99181 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.72 71.98 0.56 -3.52 16 2 C 0.16 5.72 3.20 44.97 0.14 5.86 16 3 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.14 4.65 2.33 45.07 0.10 4.75 16 5 H 0.08 2.52 7.58 -2.39 -0.02 2.51 16 6 N -0.70 -19.81 3.36 -442.17 -1.48 -21.29 16 7 C 0.51 14.03 7.12 87.66 0.62 14.66 16 8 O -0.59 -20.03 15.65 -3.03 -0.05 -20.08 16 9 C -0.10 -1.98 2.53 -11.54 -0.03 -2.01 16 10 C -0.11 -2.00 4.98 30.59 0.15 -1.85 16 11 C -0.15 -2.31 5.45 30.59 0.17 -2.15 16 12 C 0.28 5.05 2.10 30.60 0.06 5.11 16 13 F -0.21 -4.29 17.06 44.97 0.77 -3.52 16 14 F -0.22 -5.12 16.03 44.97 0.72 -4.40 16 15 C -0.15 -2.13 5.45 30.59 0.17 -1.96 16 16 C -0.09 -1.71 4.37 30.59 0.13 -1.58 16 17 C -0.12 -3.84 5.58 30.62 0.17 -3.67 16 18 C -0.12 -4.47 5.93 30.67 0.18 -4.29 16 19 C 0.18 8.02 5.29 86.36 0.46 8.48 16 20 N -0.59 -25.95 2.65 -675.23 -1.79 -27.74 16 21 C -0.24 -11.49 8.61 84.03 0.72 -10.77 16 22 H 0.08 3.69 6.20 -2.91 -0.02 3.67 16 23 C -0.05 -2.54 4.96 84.86 0.42 -2.11 16 24 N -0.94 -52.40 11.14 21.65 0.24 -52.16 16 25 Si 0.96 41.37 29.58 68.60 2.03 43.40 16 26 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.31 -14.02 7.11 99.48 0.71 -13.32 16 28 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 29 H 0.06 1.88 6.38 -2.38 -0.02 1.86 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.64 7.66 -2.39 -0.02 1.62 16 32 H 0.41 11.63 7.19 -92.71 -0.67 10.96 16 33 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.37 7.80 -2.39 -0.02 1.35 16 35 H 0.09 1.69 7.57 -2.38 -0.02 1.67 16 36 H 0.12 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.59 8.10 -2.39 -0.02 1.57 16 41 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 2.01 7.53 -2.39 -0.02 1.99 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 2.94 6.06 -2.39 -0.01 2.92 16 47 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H 0.24 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -61.52 370.08 4.77 -56.76 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.29 Total: 24.09 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.04 Total: 4.95 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -3.03 Total: -101.19 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.49 Total: -7.93 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -61.52 4.77 -56.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993862205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.895 kcal (2) G-P(sol) polarization free energy of solvation -61.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds