Wall clock time and date at job start Tue Mar 31 2020 17:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.58479 * 2 1 4 4 C 1.53196 * 109.70218 * 120.36646 * 2 1 3 5 5 H 1.09004 * 109.50949 * 54.54815 * 4 2 1 6 6 N 1.46496 * 109.48777 * 294.45162 * 4 2 1 7 7 C 1.34777 * 119.99978 * 155.17053 * 6 4 2 8 8 O 1.21286 * 120.00148 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99894 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.47334 * 299.99988 * 9 7 6 11 11 C 1.53002 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46975 * 60.00024 * 11 10 9 13 13 F 1.39894 * 109.46985 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.47033 * 59.99970 * 12 11 10 15 15 C 1.53001 * 109.47134 * 300.00020 * 12 11 10 16 16 C 1.53002 * 109.47206 * 60.00121 * 15 12 11 17 17 C 1.53047 * 109.31189 * 174.50535 * 4 2 1 18 18 C 1.53047 * 109.52526 * 298.61450 * 17 4 2 19 19 C 1.53194 * 109.30936 * 61.37260 * 18 17 4 20 20 N 1.46925 * 108.77629 * 305.36001 * 19 18 17 21 21 C 1.36935 * 120.63293 * 233.63379 * 20 19 18 22 22 H 1.07997 * 120.00279 * 150.15703 * 21 20 19 23 23 C 1.38820 * 119.99823 * 330.15217 * 21 20 19 24 24 N 1.31615 * 119.99827 * 344.50326 * 23 21 20 25 25 Si 1.86798 * 119.99672 * 164.50121 * 23 21 20 26 26 H 1.48499 * 109.47331 * 60.00031 * 25 23 21 27 27 H 1.48500 * 109.46947 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47173 * 299.99718 * 25 23 21 29 29 H 1.09000 * 109.46888 * 180.28882 * 1 2 3 30 30 H 1.09002 * 109.46863 * 300.28190 * 1 2 3 31 31 H 1.08991 * 109.47454 * 60.28275 * 1 2 3 32 32 H 0.96998 * 119.99888 * 335.16243 * 6 4 2 33 33 H 1.09000 * 109.47163 * 60.00445 * 9 7 6 34 34 H 1.09000 * 109.47368 * 300.00331 * 10 9 7 35 35 H 1.09007 * 109.47025 * 59.99873 * 10 9 7 36 36 H 1.09006 * 109.46957 * 300.00306 * 11 10 9 37 37 H 1.08999 * 109.46936 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46840 * 300.00428 * 15 12 11 39 39 H 1.08996 * 109.47177 * 179.97438 * 15 12 11 40 40 H 1.08995 * 109.47394 * 180.02562 * 16 15 12 41 41 H 1.09000 * 109.47347 * 59.99509 * 16 15 12 42 42 H 1.08995 * 109.45844 * 178.60383 * 17 4 2 43 43 H 1.09001 * 109.45768 * 58.62566 * 17 4 2 44 44 H 1.08995 * 109.49507 * 181.32278 * 18 17 4 45 45 H 1.08996 * 109.49561 * 301.42352 * 18 17 4 46 46 H 1.08997 * 109.58707 * 65.15365 * 19 18 17 47 47 H 1.09009 * 109.58307 * 185.57641 * 19 18 17 48 48 H 0.97000 * 119.99811 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7291 1.2444 5 1 1.6081 -1.7261 1.2904 6 7 1.6730 0.0256 2.4432 7 6 1.5556 -0.6063 3.6279 8 8 1.7595 -1.7996 3.7016 9 6 1.1720 0.1702 4.8612 10 6 2.2155 1.2578 5.1242 11 6 1.8257 2.0465 6.3760 12 6 1.7623 1.0996 7.5762 13 9 1.4053 1.8207 8.7206 14 9 3.0148 0.5072 7.7695 15 6 0.7188 0.0120 7.3132 16 6 1.1086 -0.7767 6.0614 17 6 3.5706 -0.8443 1.1674 18 6 3.9602 -1.6608 -0.0670 19 6 3.4653 -0.9425 -1.3264 20 7 2.0225 -0.6981 -1.1953 21 6 1.1533 -1.1135 -2.1685 22 1 0.1402 -1.3829 -1.9085 23 6 1.5742 -1.1881 -3.4892 24 7 2.6830 -0.5848 -3.8616 25 14 0.5667 -2.1450 -4.7378 26 1 -0.7952 -1.5600 -4.8278 27 1 1.2262 -2.0720 -6.0663 28 1 0.4687 -3.5641 -4.3117 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5094 -0.8924 32 1 1.5104 0.9800 2.3844 33 1 0.1960 0.6317 4.7111 34 1 3.1915 0.7963 5.2744 35 1 2.2604 1.9326 4.2694 36 1 0.8497 2.5081 6.2254 37 1 2.5693 2.8210 6.5636 38 1 -0.2571 0.4736 7.1625 39 1 0.6739 -0.6628 8.1679 40 1 0.3650 -1.5512 5.8737 41 1 2.0845 -1.2382 6.2119 42 1 3.9430 -1.3407 2.0635 43 1 4.0069 0.1520 1.0963 44 1 5.0446 -1.7625 -0.1085 45 1 3.5036 -2.6488 -0.0086 46 1 3.9886 0.0075 -1.4346 47 1 3.6523 -1.5667 -2.2003 48 1 2.9770 -0.6367 -4.7845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993862207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:19 Heat of formation + Delta-G solvation = -142.662704 kcal Electronic energy + Delta-G solvation = -29863.750408 eV Core-core repulsion = 25588.595883 eV Total energy + Delta-G solvation = -4275.154526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.23524 -47.22203 -40.21079 -38.14440 -36.91763 -34.36364 -32.63572 -31.83718 -31.41521 -30.65549 -28.99160 -26.26199 -25.04926 -23.89894 -23.50779 -22.00866 -20.75210 -20.68688 -19.92721 -19.32071 -17.72471 -17.15237 -17.07028 -16.55115 -16.41026 -15.74229 -15.06179 -14.96851 -14.42521 -14.34437 -14.05871 -13.79129 -13.78082 -13.69593 -13.51586 -13.31635 -13.22066 -12.88948 -12.79727 -12.55890 -12.46808 -12.06896 -11.88793 -11.70391 -11.60220 -11.56262 -11.14016 -11.04216 -10.93522 -10.77499 -10.60298 -10.48911 -10.31787 -10.14860 -10.07031 -9.88245 -9.57971 -9.35067 -8.69260 -8.47269 -6.69252 -5.82143 -3.26939 2.74794 3.28016 3.36470 3.42448 3.43618 3.44440 3.72300 4.00277 4.03314 4.45044 4.46964 4.55356 4.69043 4.77360 4.86268 4.99890 5.21189 5.25138 5.29960 5.36869 5.38152 5.40838 5.49948 5.56069 5.61504 5.64896 5.77207 5.81783 5.94147 5.99829 6.06655 6.18699 6.30566 6.37248 6.50673 6.61389 6.70111 6.72909 6.83204 6.96143 7.04262 7.37386 7.63748 7.72200 7.78970 8.38311 8.44184 9.17543 9.80188 10.36829 11.26569 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.029353 B = 0.002557 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.683976 B =10948.001477 C =11184.019560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.085 0.915 6 N -0.717 5.717 7 C 0.516 3.484 8 O -0.540 6.540 9 C -0.112 4.112 10 C -0.111 4.111 11 C -0.155 4.155 12 C 0.286 3.714 13 F -0.205 7.205 14 F -0.198 7.198 15 C -0.158 4.158 16 C -0.099 4.099 17 C -0.116 4.116 18 C -0.141 4.141 19 C 0.170 3.830 20 N -0.582 5.582 21 C -0.254 4.254 22 H 0.069 0.931 23 C 0.006 3.994 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.395 0.605 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.087 0.913 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 6.052 20.334 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.025 3.975 5 H 0.103 0.897 6 N -0.367 5.367 7 C 0.301 3.699 8 O -0.417 6.417 9 C -0.134 4.134 10 C -0.149 4.149 11 C -0.193 4.193 12 C 0.250 3.750 13 F -0.186 7.186 14 F -0.179 7.179 15 C -0.196 4.196 16 C -0.137 4.137 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.045 3.955 20 N -0.305 5.305 21 C -0.384 4.384 22 H 0.087 0.913 23 C -0.193 4.193 24 N -0.546 5.546 25 Si 0.732 3.268 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.210 1.210 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.229 0.771 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.105 0.895 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.365 5.198 20.200 20.992 hybrid contribution -0.383 0.099 -0.555 0.681 sum -2.748 5.296 19.645 20.531 Atomic orbital electron populations 1.21811 0.95697 1.01630 1.00216 1.20557 0.93199 0.93534 0.86719 0.95583 1.21794 0.95068 0.96881 0.83799 0.89658 1.46162 1.69945 1.12187 1.08420 1.20352 0.77196 0.87949 0.84389 1.90709 1.50068 1.15172 1.85714 1.21440 1.00998 0.96894 0.94062 1.21517 0.99436 0.96735 0.97235 1.22513 1.05343 0.98205 0.93286 1.21164 0.80898 0.89715 0.83255 1.93004 1.91954 1.79555 1.54038 1.93009 1.44087 1.85029 1.95771 1.22559 0.98512 0.97505 1.00981 1.21317 1.04449 0.97238 0.90708 1.21753 0.95416 0.99994 0.98310 1.22186 0.99221 0.99731 0.96896 1.20823 0.83099 0.97153 0.94445 1.44020 1.03079 1.65139 1.18269 1.19109 0.95277 1.37962 0.86026 0.91301 1.25087 0.97894 0.99380 0.96972 1.70013 1.24206 1.43541 1.16806 0.86384 0.79571 0.80298 0.80579 1.20873 1.21642 1.20965 0.92721 0.94368 0.91739 0.77127 0.88114 0.90114 0.89685 0.88449 0.89074 0.88666 0.89170 0.89556 0.90004 0.93225 0.92817 0.93026 0.92536 0.96291 0.89506 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.84 37.16 0.29 -2.13 16 2 C 0.17 3.24 3.03 -67.60 -0.20 3.04 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.25 2.00 -67.81 -0.14 2.12 16 5 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 6 N -0.72 -9.44 4.48 -53.68 -0.24 -9.68 16 7 C 0.52 6.87 7.12 -10.98 -0.08 6.79 16 8 O -0.54 -9.52 15.65 5.55 0.09 -9.44 16 9 C -0.11 -1.00 2.52 -91.77 -0.23 -1.23 16 10 C -0.11 -0.84 4.98 -26.73 -0.13 -0.97 16 11 C -0.16 -1.02 5.45 -26.73 -0.15 -1.16 16 12 C 0.29 2.43 2.10 -26.73 -0.06 2.38 16 13 F -0.20 -1.99 17.06 2.25 0.04 -1.95 16 14 F -0.20 -2.15 16.03 2.25 0.04 -2.11 16 15 C -0.16 -1.14 5.45 -26.73 -0.15 -1.29 16 16 C -0.10 -0.91 4.37 -26.73 -0.12 -1.02 16 17 C -0.12 -2.03 5.46 -26.68 -0.15 -2.17 16 18 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 19 C 0.17 3.96 5.28 -3.71 -0.02 3.94 16 20 N -0.58 -13.88 2.99 -164.77 -0.49 -14.37 16 21 C -0.25 -6.65 8.57 -15.06 -0.13 -6.78 16 22 H 0.07 1.76 6.24 -52.49 -0.33 1.44 16 23 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 24 N -0.90 -25.46 11.23 55.49 0.62 -24.84 16 25 Si 0.90 21.28 29.58 -169.99 -5.03 16.25 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.05 1.03 7.43 -51.93 -0.39 0.64 16 30 H 0.04 0.54 7.81 -51.93 -0.41 0.14 16 31 H 0.06 1.24 7.63 -51.93 -0.40 0.84 16 32 H 0.40 4.11 8.02 -40.82 -0.33 3.78 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 35 H 0.08 0.53 7.57 -51.93 -0.39 0.14 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 2.27 6.15 -51.92 -0.32 1.95 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -30.85 373.50 -8.81 -39.66 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.96 Total: 2.19 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.50 Total: -1.33 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.11 Total: -48.89 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.85 -8.81 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993862207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.002 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds