Wall clock time and date at job start Tue Mar 31 2020 17:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.58479 * 2 1 4 4 C 1.53196 * 109.70218 * 120.36646 * 2 1 3 5 5 H 1.09004 * 109.50949 * 54.54815 * 4 2 1 6 6 N 1.46496 * 109.48777 * 294.45162 * 4 2 1 7 7 C 1.34777 * 119.99978 * 155.17053 * 6 4 2 8 8 O 1.21286 * 120.00148 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99894 * 179.97438 * 7 6 4 10 10 C 1.53001 * 109.47334 * 299.99988 * 9 7 6 11 11 C 1.53002 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46975 * 60.00024 * 11 10 9 13 13 F 1.39894 * 109.46985 * 180.02562 * 12 11 10 14 14 F 1.39902 * 109.47033 * 59.99970 * 12 11 10 15 15 C 1.53001 * 109.47134 * 300.00020 * 12 11 10 16 16 C 1.53002 * 109.47206 * 60.00121 * 15 12 11 17 17 C 1.53047 * 109.31189 * 174.50535 * 4 2 1 18 18 C 1.53047 * 109.52526 * 298.61450 * 17 4 2 19 19 C 1.53194 * 109.30936 * 61.37260 * 18 17 4 20 20 N 1.46925 * 108.77629 * 305.36001 * 19 18 17 21 21 C 1.36935 * 120.63293 * 233.63379 * 20 19 18 22 22 H 1.07997 * 120.00279 * 150.15703 * 21 20 19 23 23 C 1.38820 * 119.99823 * 330.15217 * 21 20 19 24 24 N 1.31615 * 119.99827 * 344.50326 * 23 21 20 25 25 Si 1.86798 * 119.99672 * 164.50121 * 23 21 20 26 26 H 1.48499 * 109.47331 * 60.00031 * 25 23 21 27 27 H 1.48500 * 109.46947 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47173 * 299.99718 * 25 23 21 29 29 H 1.09000 * 109.46888 * 180.28882 * 1 2 3 30 30 H 1.09002 * 109.46863 * 300.28190 * 1 2 3 31 31 H 1.08991 * 109.47454 * 60.28275 * 1 2 3 32 32 H 0.96998 * 119.99888 * 335.16243 * 6 4 2 33 33 H 1.09000 * 109.47163 * 60.00445 * 9 7 6 34 34 H 1.09000 * 109.47368 * 300.00331 * 10 9 7 35 35 H 1.09007 * 109.47025 * 59.99873 * 10 9 7 36 36 H 1.09006 * 109.46957 * 300.00306 * 11 10 9 37 37 H 1.08999 * 109.46936 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46840 * 300.00428 * 15 12 11 39 39 H 1.08996 * 109.47177 * 179.97438 * 15 12 11 40 40 H 1.08995 * 109.47394 * 180.02562 * 16 15 12 41 41 H 1.09000 * 109.47347 * 59.99509 * 16 15 12 42 42 H 1.08995 * 109.45844 * 178.60383 * 17 4 2 43 43 H 1.09001 * 109.45768 * 58.62566 * 17 4 2 44 44 H 1.08995 * 109.49507 * 181.32278 * 18 17 4 45 45 H 1.08996 * 109.49561 * 301.42352 * 18 17 4 46 46 H 1.08997 * 109.58707 * 65.15365 * 19 18 17 47 47 H 1.09009 * 109.58307 * 185.57641 * 19 18 17 48 48 H 0.97000 * 119.99811 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7291 1.2444 5 1 1.6081 -1.7261 1.2904 6 7 1.6730 0.0256 2.4432 7 6 1.5556 -0.6063 3.6279 8 8 1.7595 -1.7996 3.7016 9 6 1.1720 0.1702 4.8612 10 6 2.2155 1.2578 5.1242 11 6 1.8257 2.0465 6.3760 12 6 1.7623 1.0996 7.5762 13 9 1.4053 1.8207 8.7206 14 9 3.0148 0.5072 7.7695 15 6 0.7188 0.0120 7.3132 16 6 1.1086 -0.7767 6.0614 17 6 3.5706 -0.8443 1.1674 18 6 3.9602 -1.6608 -0.0670 19 6 3.4653 -0.9425 -1.3264 20 7 2.0225 -0.6981 -1.1953 21 6 1.1533 -1.1135 -2.1685 22 1 0.1402 -1.3829 -1.9085 23 6 1.5742 -1.1881 -3.4892 24 7 2.6830 -0.5848 -3.8616 25 14 0.5667 -2.1450 -4.7378 26 1 -0.7952 -1.5600 -4.8278 27 1 1.2262 -2.0720 -6.0663 28 1 0.4687 -3.5641 -4.3117 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5094 -0.8924 32 1 1.5104 0.9800 2.3844 33 1 0.1960 0.6317 4.7111 34 1 3.1915 0.7963 5.2744 35 1 2.2604 1.9326 4.2694 36 1 0.8497 2.5081 6.2254 37 1 2.5693 2.8210 6.5636 38 1 -0.2571 0.4736 7.1625 39 1 0.6739 -0.6628 8.1679 40 1 0.3650 -1.5512 5.8737 41 1 2.0845 -1.2382 6.2119 42 1 3.9430 -1.3407 2.0635 43 1 4.0069 0.1520 1.0963 44 1 5.0446 -1.7625 -0.1085 45 1 3.5036 -2.6488 -0.0086 46 1 3.9886 0.0075 -1.4346 47 1 3.6523 -1.5667 -2.2003 48 1 2.9770 -0.6367 -4.7845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993862207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:18 Heat of formation + Delta-G solvation = -160.536565 kcal Electronic energy + Delta-G solvation = -29864.525477 eV Core-core repulsion = 25588.595883 eV Total energy + Delta-G solvation = -4275.929595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.92842 -47.93563 -41.31409 -39.51654 -37.88291 -35.87526 -34.26519 -33.42057 -32.12765 -31.66145 -30.40664 -27.84198 -26.85445 -24.91013 -24.13214 -23.39922 -22.31922 -21.60444 -21.13567 -20.63944 -18.46377 -18.31253 -17.98772 -17.81860 -17.29278 -17.16074 -16.63486 -16.04601 -15.69698 -15.59306 -15.25676 -15.10266 -14.95040 -14.74541 -14.47900 -14.36670 -14.30706 -14.18075 -13.94026 -13.40715 -13.36324 -13.26361 -13.08562 -12.78151 -12.74945 -12.69685 -12.61303 -12.50235 -12.36195 -12.17715 -12.02171 -11.80187 -11.76368 -11.69217 -11.59369 -11.17109 -11.09136 -10.67481 -10.51430 -9.94985 -8.63380 -7.85142 -5.31232 1.46972 1.50140 1.55563 1.70864 2.19014 2.54785 2.84412 3.15250 3.30624 3.33083 3.44636 3.65403 3.77903 3.88619 3.89600 3.99998 4.09610 4.10960 4.22749 4.33497 4.36407 4.38033 4.54708 4.64285 4.64371 4.69490 4.80413 4.84070 4.89342 4.90816 4.95304 4.99264 5.02152 5.05457 5.14178 5.18336 5.25667 5.29498 5.33804 5.48985 5.51968 5.63002 5.71312 5.77264 6.42818 6.67474 7.17248 7.36727 7.88031 8.39526 9.21712 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.029353 B = 0.002557 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.683976 B =10948.001477 C =11184.019560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.035 0.965 4 C 0.147 3.853 5 H 0.054 0.946 6 N -0.705 5.705 7 C 0.515 3.485 8 O -0.587 6.587 9 C -0.101 4.101 10 C -0.108 4.108 11 C -0.149 4.149 12 C 0.274 3.726 13 F -0.212 7.212 14 F -0.217 7.217 15 C -0.150 4.150 16 C -0.097 4.097 17 C -0.108 4.108 18 C -0.131 4.131 19 C 0.177 3.823 20 N -0.601 5.601 21 C -0.255 4.255 22 H 0.072 0.928 23 C -0.047 4.047 24 N -0.933 5.933 25 Si 0.959 3.041 26 H -0.273 1.273 27 H -0.296 1.296 28 H -0.283 1.283 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.414 0.586 33 H 0.137 0.863 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.005 0.995 47 H 0.051 0.949 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 7.779 22.045 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.053 0.947 4 C 0.040 3.960 5 H 0.072 0.928 6 N -0.357 5.357 7 C 0.302 3.698 8 O -0.467 6.467 9 C -0.122 4.122 10 C -0.146 4.146 11 C -0.186 4.186 12 C 0.238 3.762 13 F -0.193 7.193 14 F -0.199 7.199 15 C -0.188 4.188 16 C -0.135 4.135 17 C -0.147 4.147 18 C -0.170 4.170 19 C 0.052 3.948 20 N -0.325 5.325 21 C -0.385 4.385 22 H 0.089 0.911 23 C -0.243 4.243 24 N -0.579 5.579 25 Si 0.788 3.212 26 H -0.199 1.199 27 H -0.222 1.222 28 H -0.210 1.210 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.251 0.749 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.023 0.977 47 H 0.070 0.930 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.928 6.961 21.952 23.362 hybrid contribution 0.108 -0.454 -1.005 1.108 sum -3.820 6.507 20.946 22.264 Atomic orbital electron populations 1.21729 0.94356 1.00979 1.01429 1.20737 0.94349 0.93502 0.85628 0.94733 1.21245 0.94550 0.95558 0.84629 0.92763 1.45926 1.69730 1.12853 1.07169 1.21153 0.75766 0.87590 0.85247 1.90701 1.51977 1.17594 1.86393 1.21464 1.03085 0.96556 0.91123 1.21509 0.97841 0.96536 0.98697 1.22530 1.07216 0.97542 0.91339 1.21591 0.80333 0.90511 0.83720 1.92988 1.91945 1.79707 1.54658 1.92975 1.45499 1.85472 1.95917 1.22532 0.99339 0.97112 0.99809 1.21247 1.02851 0.97499 0.91944 1.21673 0.95692 1.00255 0.97086 1.22027 1.00176 0.98741 0.96095 1.20603 0.83320 0.96053 0.94864 1.44266 1.02997 1.65985 1.19247 1.19398 0.95594 1.36866 0.86617 0.91079 1.25758 0.99094 1.00715 0.98721 1.70153 1.25826 1.45276 1.16638 0.85463 0.78560 0.78956 0.78209 1.19905 1.22188 1.20978 0.94296 0.90182 0.93399 0.74934 0.84494 0.92226 0.87580 0.85551 0.88469 0.85861 0.89204 0.90172 0.92713 0.92940 0.91441 0.91160 0.93978 0.97713 0.93010 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 7.84 71.98 0.56 -3.74 16 2 C 0.16 6.16 3.03 44.97 0.14 6.30 16 3 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 4 C 0.15 4.91 2.00 45.07 0.09 5.00 16 5 H 0.05 2.19 7.58 -2.39 -0.02 2.18 16 6 N -0.71 -16.65 4.48 -442.14 -1.98 -18.64 16 7 C 0.51 12.63 7.12 87.66 0.62 13.25 16 8 O -0.59 -20.44 15.65 -3.05 -0.05 -20.48 16 9 C -0.10 -1.47 2.52 -11.54 -0.03 -1.50 16 10 C -0.11 -1.26 4.98 30.60 0.15 -1.11 16 11 C -0.15 -1.38 5.45 30.60 0.17 -1.21 16 12 C 0.27 4.01 2.10 30.60 0.06 4.08 16 13 F -0.21 -3.63 17.06 44.97 0.77 -2.87 16 14 F -0.22 -4.54 16.03 44.97 0.72 -3.82 16 15 C -0.15 -1.78 5.45 30.60 0.17 -1.61 16 16 C -0.10 -1.61 4.37 30.60 0.13 -1.48 16 17 C -0.11 -3.67 5.46 30.63 0.17 -3.50 16 18 C -0.13 -5.09 6.08 30.68 0.19 -4.91 16 19 C 0.18 8.42 5.28 86.36 0.46 8.88 16 20 N -0.60 -28.90 2.99 -675.22 -2.02 -30.92 16 21 C -0.25 -13.47 8.57 84.04 0.72 -12.75 16 22 H 0.07 3.66 6.24 -2.91 -0.02 3.64 16 23 C -0.05 -2.59 4.94 84.86 0.42 -2.17 16 24 N -0.93 -54.09 11.23 21.65 0.24 -53.85 16 25 Si 0.96 44.39 29.58 68.60 2.03 46.41 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 29 H 0.04 1.42 7.43 -2.39 -0.02 1.40 16 30 H 0.08 2.00 7.81 -2.39 -0.02 1.98 16 31 H 0.05 1.77 7.63 -2.39 -0.02 1.75 16 32 H 0.41 6.85 8.02 -92.71 -0.74 6.11 16 33 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 35 H 0.11 0.83 7.57 -2.38 -0.02 0.81 16 36 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.05 1.20 7.76 -2.39 -0.02 1.18 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.05 2.81 6.15 -2.38 -0.01 2.80 16 48 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -70.14 373.50 3.95 -66.19 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.21 Total: 14.44 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 4.02 Total: 3.53 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -3.75 Total: -103.40 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.49 Total: -6.69 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -70.14 3.95 -66.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993862207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.343 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds