Wall clock time and date at job start Tue Mar 31 2020 17:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.70242 * 2 1 4 4 C 1.53186 * 109.58475 * 239.64336 * 2 1 3 5 5 H 1.09004 * 109.52959 * 305.55099 * 4 2 1 6 6 N 1.46499 * 109.49817 * 65.62934 * 4 2 1 7 7 C 1.34782 * 119.99969 * 204.83709 * 6 4 2 8 8 O 1.21275 * 120.00261 * 359.97438 * 7 6 4 9 9 C 1.50706 * 119.99730 * 179.97438 * 7 6 4 10 10 C 1.52998 * 109.46935 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47270 * 60.00109 * 11 10 9 13 13 F 1.39892 * 109.47141 * 59.99688 * 12 11 10 14 14 F 1.39900 * 109.47058 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47010 * 299.99897 * 12 11 10 16 16 C 1.53003 * 109.47375 * 60.00072 * 15 12 11 17 17 C 1.53036 * 109.31527 * 185.58051 * 4 2 1 18 18 C 1.53046 * 109.53637 * 61.36398 * 17 4 2 19 19 C 1.53192 * 109.31126 * 298.63629 * 18 17 4 20 20 N 1.46926 * 109.58147 * 120.35790 * 2 1 3 21 21 C 1.36933 * 120.63686 * 353.36718 * 20 2 1 22 22 H 1.08003 * 119.99505 * 29.03802 * 21 20 2 23 23 C 1.38809 * 120.00574 * 209.03168 * 21 20 2 24 24 N 1.31616 * 119.99469 * 15.02468 * 23 21 20 25 25 Si 1.86793 * 120.00175 * 195.01658 * 23 21 20 26 26 H 1.48505 * 109.46980 * 60.00687 * 25 23 21 27 27 H 1.48502 * 109.47117 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47712 * 300.00738 * 25 23 21 29 29 H 1.08997 * 109.47439 * 180.35223 * 1 2 3 30 30 H 1.09005 * 109.46707 * 300.35698 * 1 2 3 31 31 H 1.09008 * 109.47033 * 60.35348 * 1 2 3 32 32 H 0.96999 * 120.00468 * 24.83680 * 6 4 2 33 33 H 1.08993 * 109.47126 * 300.00188 * 9 7 6 34 34 H 1.09004 * 109.47209 * 60.00072 * 10 9 7 35 35 H 1.09003 * 109.47284 * 299.99963 * 10 9 7 36 36 H 1.09003 * 109.46789 * 299.99932 * 11 10 9 37 37 H 1.09001 * 109.46914 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.47548 * 179.97438 * 15 12 11 39 39 H 1.09003 * 109.47284 * 300.00320 * 15 12 11 40 40 H 1.09001 * 109.47269 * 180.02562 * 16 15 12 41 41 H 1.09003 * 109.46712 * 59.99898 * 16 15 12 42 42 H 1.08999 * 109.46525 * 181.38962 * 17 4 2 43 43 H 1.09008 * 109.45876 * 301.35995 * 17 4 2 44 44 H 1.08996 * 109.49257 * 58.59096 * 18 17 4 45 45 H 1.09008 * 109.49214 * 178.68890 * 18 17 4 46 46 H 1.09006 * 109.58438 * 174.42035 * 19 18 17 47 47 H 1.08997 * 109.58819 * 294.84643 * 19 18 17 48 48 H 0.97007 * 119.99646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.6029 -1.7253 -1.2920 6 7 1.6705 0.0267 -2.4434 7 6 1.5504 -0.6043 -3.6283 8 8 1.7514 -1.7980 -3.7028 9 6 1.1661 0.1734 -4.8607 10 6 1.1005 -0.7729 -6.0611 11 6 0.7111 0.0168 -7.3124 12 6 1.7559 1.1030 -7.5757 13 9 3.0074 0.5089 -7.7700 14 9 1.4000 1.8247 -8.7202 15 6 1.8215 2.0493 -6.3753 16 6 2.2110 1.2597 -5.1240 17 6 3.5674 -0.8481 -1.1702 18 6 3.9568 -1.6659 0.0635 19 6 3.4650 -0.9470 1.3237 20 7 2.0224 -0.6996 1.1945 21 6 1.1537 -1.1127 2.1690 22 1 0.1359 -1.3671 1.9125 23 6 1.5811 -1.2046 3.4865 24 7 2.7044 -0.6264 3.8556 25 14 0.5620 -2.1484 4.7353 26 1 0.4322 -3.5626 4.3010 27 1 1.2311 -2.0976 6.0601 28 1 -0.7871 -1.5363 4.8377 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5084 -0.8932 32 1 1.5101 0.9815 -2.3841 33 1 0.1912 0.6364 -4.7088 34 1 0.3565 -1.5470 -5.8733 35 1 2.0758 -1.2355 -6.2128 36 1 -0.2641 0.4797 -7.1609 37 1 0.6648 -0.6573 -8.1677 38 1 2.5662 2.8229 -6.5626 39 1 0.8463 2.5122 -6.2238 40 1 2.2573 1.9338 -4.2687 41 1 3.1861 0.7968 -5.2755 42 1 3.9377 -1.3449 -2.0669 43 1 4.0061 0.1473 -1.0991 44 1 3.4981 -2.6529 0.0052 45 1 5.0412 -1.7697 0.1037 46 1 3.6517 -1.5719 2.1972 47 1 3.9903 0.0019 1.4317 48 1 3.0029 -0.6903 4.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993862208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:22 Heat of formation + Delta-G solvation = -142.224835 kcal Electronic energy + Delta-G solvation = -29865.716785 eV Core-core repulsion = 25590.581247 eV Total energy + Delta-G solvation = -4275.135538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.23711 -47.22089 -40.21307 -38.14635 -36.91936 -34.36775 -32.63236 -31.84292 -31.41587 -30.65445 -28.98444 -26.26114 -25.05422 -23.89799 -23.50778 -22.00519 -20.75260 -20.68653 -19.92666 -19.31815 -17.72537 -17.15218 -17.07098 -16.55177 -16.41366 -15.74272 -15.06312 -14.97432 -14.42548 -14.34570 -14.05873 -13.78804 -13.77569 -13.69373 -13.51477 -13.31724 -13.22168 -12.88854 -12.79741 -12.55530 -12.46775 -12.06912 -11.88843 -11.70385 -11.60184 -11.56214 -11.14458 -11.04328 -10.92989 -10.77629 -10.60089 -10.48974 -10.31617 -10.14590 -10.06543 -9.88139 -9.57375 -9.35242 -8.69255 -8.47085 -6.70206 -5.81636 -3.26214 2.74821 3.27940 3.36567 3.42526 3.43600 3.44416 3.72275 4.00306 4.03236 4.45023 4.47008 4.55357 4.68980 4.77297 4.86249 4.99846 5.21155 5.25228 5.30085 5.36781 5.38095 5.40781 5.50212 5.56117 5.61467 5.64868 5.77434 5.81706 5.94260 5.99811 6.06626 6.18543 6.30440 6.37001 6.50804 6.61718 6.70124 6.73225 6.83582 6.95359 7.04159 7.38554 7.65599 7.72141 7.78748 8.38283 8.44100 9.17767 9.80464 10.36479 11.26896 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.002557 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.215533 B =10945.747412 C =11185.258117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.085 0.915 6 N -0.717 5.717 7 C 0.516 3.484 8 O -0.540 6.540 9 C -0.112 4.112 10 C -0.099 4.099 11 C -0.158 4.158 12 C 0.286 3.714 13 F -0.198 7.198 14 F -0.205 7.205 15 C -0.156 4.156 16 C -0.111 4.111 17 C -0.116 4.116 18 C -0.141 4.141 19 C 0.169 3.831 20 N -0.582 5.582 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.004 3.996 24 N -0.903 5.903 25 Si 0.903 3.097 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.395 0.605 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.089 0.911 47 H 0.018 0.982 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 6.132 -20.321 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.025 3.975 5 H 0.103 0.897 6 N -0.367 5.367 7 C 0.301 3.699 8 O -0.417 6.417 9 C -0.134 4.134 10 C -0.137 4.137 11 C -0.196 4.196 12 C 0.250 3.750 13 F -0.179 7.179 14 F -0.186 7.186 15 C -0.194 4.194 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.305 5.305 21 C -0.383 4.383 22 H 0.088 0.912 23 C -0.194 4.194 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.229 0.771 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.037 0.963 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.428 5.272 -20.188 21.006 hybrid contribution -0.388 0.107 0.548 0.680 sum -2.816 5.379 -19.640 20.557 Atomic orbital electron populations 1.21818 0.95706 1.01698 1.00159 1.20556 0.93193 0.93531 0.86727 0.95563 1.21792 0.95085 0.96849 0.83820 0.89661 1.46166 1.69976 1.12142 1.08445 1.20352 0.77192 0.87964 0.84380 1.90706 1.50110 1.15153 1.85681 1.21441 1.00989 0.96894 0.94069 1.21317 1.04455 0.97233 0.90708 1.22559 0.98495 0.97518 1.00981 1.21162 0.80930 0.89678 0.83256 1.93006 1.44176 1.84960 1.95757 1.93006 1.91992 1.79526 1.54031 1.22511 1.05342 0.98210 0.93289 1.21520 0.99426 0.96744 0.97237 1.21754 0.95412 0.99990 0.98326 1.22189 0.99219 0.99720 0.96906 1.20853 0.83028 0.97203 0.94537 1.44032 1.03176 1.65080 1.18255 1.19127 0.94814 1.38128 0.86187 0.91241 1.25069 0.97812 0.99609 0.96944 1.70009 1.23290 1.44406 1.16998 0.86372 0.79582 0.80221 0.80587 1.20981 1.21640 1.20890 0.92671 0.91795 0.94346 0.77131 0.88109 0.89548 0.90008 0.88666 0.89172 0.89076 0.88451 0.89680 0.90113 0.93235 0.92829 0.92550 0.93032 0.89246 0.96342 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.84 37.16 0.29 -2.13 16 2 C 0.17 3.24 3.03 -67.60 -0.21 3.04 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.25 1.99 -67.82 -0.14 2.12 16 5 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 6 N -0.72 -9.44 4.47 -53.69 -0.24 -9.68 16 7 C 0.52 6.87 7.12 -10.98 -0.08 6.79 16 8 O -0.54 -9.52 15.65 5.56 0.09 -9.44 16 9 C -0.11 -1.00 2.53 -91.77 -0.23 -1.23 16 10 C -0.10 -0.91 4.37 -26.73 -0.12 -1.02 16 11 C -0.16 -1.14 5.45 -26.73 -0.15 -1.29 16 12 C 0.29 2.43 2.10 -26.73 -0.06 2.38 16 13 F -0.20 -2.15 16.02 2.25 0.04 -2.11 16 14 F -0.20 -1.99 17.06 2.25 0.04 -1.95 16 15 C -0.16 -1.02 5.45 -26.73 -0.15 -1.16 16 16 C -0.11 -0.84 4.98 -26.73 -0.13 -0.97 16 17 C -0.12 -2.03 5.46 -26.69 -0.15 -2.18 16 18 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 19 C 0.17 3.94 5.29 -3.71 -0.02 3.92 16 20 N -0.58 -13.89 2.99 -164.78 -0.49 -14.38 16 21 C -0.25 -6.62 8.61 -15.06 -0.13 -6.75 16 22 H 0.07 1.78 6.20 -52.48 -0.33 1.45 16 23 C 0.00 0.12 4.96 -17.43 -0.09 0.03 16 24 N -0.90 -25.49 11.14 55.49 0.62 -24.87 16 25 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 30 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 31 H 0.04 0.54 7.79 -51.92 -0.40 0.14 16 32 H 0.40 4.10 8.02 -40.82 -0.33 3.78 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.53 7.56 -51.93 -0.39 0.14 16 41 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 46 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -30.84 373.28 -8.81 -39.65 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.95 Total: 2.26 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.50 Total: -1.37 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.11 Total: -48.93 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.84 -8.81 -39.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993862208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.571 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds