Wall clock time and date at job start Tue Mar 31 2020 17:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.70242 * 2 1 4 4 C 1.53186 * 109.58475 * 239.64336 * 2 1 3 5 5 H 1.09004 * 109.52959 * 305.55099 * 4 2 1 6 6 N 1.46499 * 109.49817 * 65.62934 * 4 2 1 7 7 C 1.34782 * 119.99969 * 204.83709 * 6 4 2 8 8 O 1.21275 * 120.00261 * 359.97438 * 7 6 4 9 9 C 1.50706 * 119.99730 * 179.97438 * 7 6 4 10 10 C 1.52998 * 109.46935 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47270 * 60.00109 * 11 10 9 13 13 F 1.39892 * 109.47141 * 59.99688 * 12 11 10 14 14 F 1.39900 * 109.47058 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47010 * 299.99897 * 12 11 10 16 16 C 1.53003 * 109.47375 * 60.00072 * 15 12 11 17 17 C 1.53036 * 109.31527 * 185.58051 * 4 2 1 18 18 C 1.53046 * 109.53637 * 61.36398 * 17 4 2 19 19 C 1.53192 * 109.31126 * 298.63629 * 18 17 4 20 20 N 1.46926 * 109.58147 * 120.35790 * 2 1 3 21 21 C 1.36933 * 120.63686 * 353.36718 * 20 2 1 22 22 H 1.08003 * 119.99505 * 29.03802 * 21 20 2 23 23 C 1.38809 * 120.00574 * 209.03168 * 21 20 2 24 24 N 1.31616 * 119.99469 * 15.02468 * 23 21 20 25 25 Si 1.86793 * 120.00175 * 195.01658 * 23 21 20 26 26 H 1.48505 * 109.46980 * 60.00687 * 25 23 21 27 27 H 1.48502 * 109.47117 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47712 * 300.00738 * 25 23 21 29 29 H 1.08997 * 109.47439 * 180.35223 * 1 2 3 30 30 H 1.09005 * 109.46707 * 300.35698 * 1 2 3 31 31 H 1.09008 * 109.47033 * 60.35348 * 1 2 3 32 32 H 0.96999 * 120.00468 * 24.83680 * 6 4 2 33 33 H 1.08993 * 109.47126 * 300.00188 * 9 7 6 34 34 H 1.09004 * 109.47209 * 60.00072 * 10 9 7 35 35 H 1.09003 * 109.47284 * 299.99963 * 10 9 7 36 36 H 1.09003 * 109.46789 * 299.99932 * 11 10 9 37 37 H 1.09001 * 109.46914 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.47548 * 179.97438 * 15 12 11 39 39 H 1.09003 * 109.47284 * 300.00320 * 15 12 11 40 40 H 1.09001 * 109.47269 * 180.02562 * 16 15 12 41 41 H 1.09003 * 109.46712 * 59.99898 * 16 15 12 42 42 H 1.08999 * 109.46525 * 181.38962 * 17 4 2 43 43 H 1.09008 * 109.45876 * 301.35995 * 17 4 2 44 44 H 1.08996 * 109.49257 * 58.59096 * 18 17 4 45 45 H 1.09008 * 109.49214 * 178.68890 * 18 17 4 46 46 H 1.09006 * 109.58438 * 174.42035 * 19 18 17 47 47 H 1.08997 * 109.58819 * 294.84643 * 19 18 17 48 48 H 0.97007 * 119.99646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.6029 -1.7253 -1.2920 6 7 1.6705 0.0267 -2.4434 7 6 1.5504 -0.6043 -3.6283 8 8 1.7514 -1.7980 -3.7028 9 6 1.1661 0.1734 -4.8607 10 6 1.1005 -0.7729 -6.0611 11 6 0.7111 0.0168 -7.3124 12 6 1.7559 1.1030 -7.5757 13 9 3.0074 0.5089 -7.7700 14 9 1.4000 1.8247 -8.7202 15 6 1.8215 2.0493 -6.3753 16 6 2.2110 1.2597 -5.1240 17 6 3.5674 -0.8481 -1.1702 18 6 3.9568 -1.6659 0.0635 19 6 3.4650 -0.9470 1.3237 20 7 2.0224 -0.6996 1.1945 21 6 1.1537 -1.1127 2.1690 22 1 0.1359 -1.3671 1.9125 23 6 1.5811 -1.2046 3.4865 24 7 2.7044 -0.6264 3.8556 25 14 0.5620 -2.1484 4.7353 26 1 0.4322 -3.5626 4.3010 27 1 1.2311 -2.0976 6.0601 28 1 -0.7871 -1.5363 4.8377 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3633 0.5194 0.8868 31 1 -0.3633 0.5084 -0.8932 32 1 1.5101 0.9815 -2.3841 33 1 0.1912 0.6364 -4.7088 34 1 0.3565 -1.5470 -5.8733 35 1 2.0758 -1.2355 -6.2128 36 1 -0.2641 0.4797 -7.1609 37 1 0.6648 -0.6573 -8.1677 38 1 2.5662 2.8229 -6.5626 39 1 0.8463 2.5122 -6.2238 40 1 2.2573 1.9338 -4.2687 41 1 3.1861 0.7968 -5.2755 42 1 3.9377 -1.3449 -2.0669 43 1 4.0061 0.1473 -1.0991 44 1 3.4981 -2.6529 0.0052 45 1 5.0412 -1.7697 0.1037 46 1 3.6517 -1.5719 2.1972 47 1 3.9903 0.0019 1.4317 48 1 3.0029 -0.6903 4.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993862208.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:21 Heat of formation + Delta-G solvation = -160.086115 kcal Electronic energy + Delta-G solvation = -29866.491309 eV Core-core repulsion = 25590.581247 eV Total energy + Delta-G solvation = -4275.910062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.93044 -47.93458 -41.31662 -39.51920 -37.88433 -35.88027 -34.26102 -33.42610 -32.12669 -31.65894 -30.40233 -27.84171 -26.85827 -24.90815 -24.13200 -23.39700 -22.31967 -21.60473 -21.13356 -20.63954 -18.46447 -18.31483 -17.98893 -17.81924 -17.29361 -17.16202 -16.64008 -16.04642 -15.69388 -15.58517 -15.25811 -15.10267 -14.95001 -14.74576 -14.47924 -14.36517 -14.30452 -14.17965 -13.94098 -13.40690 -13.36517 -13.26217 -13.08473 -12.78361 -12.74996 -12.69594 -12.61343 -12.50069 -12.35528 -12.17701 -12.01512 -11.80621 -11.76226 -11.69329 -11.59259 -11.16882 -11.09187 -10.67552 -10.51144 -9.94964 -8.64254 -7.84610 -5.30429 1.47116 1.50249 1.55667 1.70883 2.18928 2.54936 2.84398 3.15235 3.31031 3.33032 3.44681 3.65366 3.77891 3.88605 3.89696 3.99993 4.09530 4.10908 4.22955 4.33494 4.36355 4.38095 4.54764 4.64216 4.64297 4.69463 4.80405 4.84015 4.89459 4.90788 4.95193 4.99218 5.02137 5.05490 5.14261 5.18276 5.25768 5.29425 5.33689 5.48628 5.52528 5.63982 5.71146 5.78165 6.42779 6.67426 7.17376 7.36717 7.88360 8.39238 9.22094 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.002557 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.215533 B =10945.747412 C =11185.258117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.164 3.836 3 H 0.036 0.964 4 C 0.147 3.853 5 H 0.054 0.946 6 N -0.706 5.706 7 C 0.515 3.485 8 O -0.587 6.587 9 C -0.101 4.101 10 C -0.097 4.097 11 C -0.150 4.150 12 C 0.274 3.726 13 F -0.217 7.217 14 F -0.212 7.212 15 C -0.149 4.149 16 C -0.108 4.108 17 C -0.108 4.108 18 C -0.131 4.131 19 C 0.176 3.824 20 N -0.601 5.601 21 C -0.254 4.254 22 H 0.073 0.927 23 C -0.049 4.049 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.274 1.274 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.004 0.996 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 7.880 -22.029 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.053 0.947 4 C 0.040 3.960 5 H 0.072 0.928 6 N -0.357 5.357 7 C 0.302 3.698 8 O -0.467 6.467 9 C -0.122 4.122 10 C -0.135 4.135 11 C -0.188 4.188 12 C 0.238 3.762 13 F -0.199 7.199 14 F -0.193 7.193 15 C -0.186 4.186 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.170 4.170 19 C 0.051 3.949 20 N -0.325 5.325 21 C -0.384 4.384 22 H 0.090 0.910 23 C -0.244 4.244 24 N -0.580 5.580 25 Si 0.789 3.211 26 H -0.210 1.210 27 H -0.222 1.222 28 H -0.199 1.199 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.251 0.749 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.022 0.978 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.010 7.059 -21.936 23.391 hybrid contribution 0.109 -0.453 0.998 1.101 sum -3.901 6.606 -20.939 22.300 Atomic orbital electron populations 1.21737 0.94347 1.00999 1.01440 1.20737 0.94357 0.93501 0.85624 0.94690 1.21244 0.94549 0.95537 0.84658 0.92769 1.45929 1.69758 1.12808 1.07192 1.21155 0.75762 0.87608 0.85236 1.90698 1.52018 1.17579 1.86361 1.21465 1.03075 0.96551 0.91130 1.21247 1.02855 0.97493 0.91945 1.22533 0.99321 0.97127 0.99811 1.21590 0.80367 0.90472 0.83721 1.92973 1.45587 1.85405 1.95904 1.92989 1.91983 1.79678 1.54653 1.22528 1.07216 0.97547 0.91341 1.21512 0.97828 0.96547 0.98701 1.21673 0.95709 1.00243 0.97088 1.22029 1.00162 0.98731 0.96122 1.20628 0.83265 0.96100 0.94955 1.44277 1.03084 1.65928 1.19237 1.19421 0.95162 1.37020 0.86765 0.90978 1.25744 0.99017 1.00951 0.98705 1.70153 1.24893 1.46134 1.16828 0.85451 0.78531 0.78923 0.78210 1.20984 1.22204 1.19919 0.94277 0.93382 0.90175 0.74933 0.84481 0.90165 0.92721 0.85856 0.89207 0.88471 0.85549 0.87573 0.92231 0.92961 0.91451 0.94007 0.91188 0.92749 0.97764 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.84 71.98 0.56 -3.74 16 2 C 0.16 6.15 3.03 44.97 0.14 6.29 16 3 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.15 4.91 1.99 45.07 0.09 5.00 16 5 H 0.05 2.19 7.58 -2.38 -0.02 2.18 16 6 N -0.71 -16.65 4.47 -442.17 -1.98 -18.62 16 7 C 0.51 12.63 7.12 87.66 0.62 13.25 16 8 O -0.59 -20.44 15.65 -3.01 -0.05 -20.49 16 9 C -0.10 -1.47 2.53 -11.54 -0.03 -1.50 16 10 C -0.10 -1.61 4.37 30.59 0.13 -1.48 16 11 C -0.15 -1.78 5.45 30.59 0.17 -1.61 16 12 C 0.27 4.02 2.10 30.59 0.06 4.08 16 13 F -0.22 -4.54 16.02 44.97 0.72 -3.82 16 14 F -0.21 -3.64 17.06 44.97 0.77 -2.87 16 15 C -0.15 -1.38 5.45 30.59 0.17 -1.21 16 16 C -0.11 -1.26 4.98 30.60 0.15 -1.11 16 17 C -0.11 -3.68 5.46 30.62 0.17 -3.51 16 18 C -0.13 -5.11 6.08 30.67 0.19 -4.92 16 19 C 0.18 8.38 5.29 86.36 0.46 8.84 16 20 N -0.60 -28.92 2.99 -675.24 -2.02 -30.94 16 21 C -0.25 -13.40 8.61 84.03 0.72 -12.68 16 22 H 0.07 3.70 6.20 -2.91 -0.02 3.68 16 23 C -0.05 -2.67 4.96 84.86 0.42 -2.25 16 24 N -0.93 -54.14 11.14 21.65 0.24 -53.90 16 25 Si 0.96 44.41 29.58 68.60 2.03 46.44 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 29 H 0.04 1.43 7.40 -2.39 -0.02 1.41 16 30 H 0.05 1.76 7.66 -2.38 -0.02 1.74 16 31 H 0.08 1.99 7.79 -2.38 -0.02 1.97 16 32 H 0.41 6.84 8.02 -92.71 -0.74 6.10 16 33 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.43 8.10 -2.38 -0.02 1.41 16 35 H 0.05 1.20 7.76 -2.39 -0.02 1.18 16 36 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.13 0.49 8.14 -2.39 -0.02 0.48 16 40 H 0.11 0.83 7.56 -2.39 -0.02 0.81 16 41 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 46 H 0.05 2.96 6.06 -2.38 -0.01 2.95 16 47 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -70.14 373.28 3.95 -66.19 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.21 Total: 14.58 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.02 Total: 3.44 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.75 Total: -103.46 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.49 Total: -6.69 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.14 3.95 -66.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993862208.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.900 kcal (2) G-P(sol) polarization free energy of solvation -70.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds