Wall clock time and date at job start Tue Mar 31 2020 17:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69792 * 2 1 4 4 C 1.52761 * 109.50851 * 239.88434 * 2 1 3 5 5 H 1.08996 * 109.38501 * 305.62918 * 4 2 1 6 6 N 1.46501 * 109.56646 * 65.66919 * 4 2 1 7 7 C 1.34772 * 119.99968 * 204.96313 * 6 4 2 8 8 O 1.21484 * 120.00179 * 0.02562 * 7 6 4 9 9 C 1.48456 * 119.99941 * 180.02562 * 7 6 4 10 10 C 1.39539 * 120.55144 * 180.02562 * 9 7 6 11 11 C 1.38757 * 118.26552 * 180.02562 * 10 9 7 12 12 N 1.32203 * 119.14823 * 359.97438 * 11 10 9 13 13 C 1.31882 * 121.03336 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.04049 * 179.97438 * 13 12 11 15 15 C 1.52999 * 117.49625 * 8.75550 * 14 13 12 16 16 C 1.52999 * 117.50005 * 300.09200 * 14 13 12 17 17 N 1.31582 * 121.92078 * 359.71409 * 13 12 11 18 18 C 1.53043 * 109.38017 * 185.70517 * 4 2 1 19 19 C 1.53040 * 109.53972 * 61.24196 * 18 4 2 20 20 C 1.53192 * 109.30986 * 298.63069 * 19 18 4 21 21 N 1.46927 * 109.58700 * 120.35375 * 2 1 3 22 22 C 1.36929 * 120.63002 * 353.41827 * 21 2 1 23 23 H 1.08007 * 119.99926 * 29.33165 * 22 21 2 24 24 C 1.38813 * 120.00233 * 209.32424 * 22 21 2 25 25 N 1.31615 * 119.99447 * 15.60322 * 24 22 21 26 26 Si 1.86801 * 120.00297 * 195.59663 * 24 22 21 27 27 H 1.48498 * 109.47227 * 265.66148 * 26 24 22 28 28 H 1.48505 * 109.46871 * 25.65865 * 26 24 22 29 29 H 1.48498 * 109.46889 * 145.65551 * 26 24 22 30 30 H 1.09005 * 109.47259 * 299.64533 * 1 2 3 31 31 H 1.09007 * 109.47258 * 59.64536 * 1 2 3 32 32 H 1.08996 * 109.47153 * 179.64688 * 1 2 3 33 33 H 0.96999 * 119.99483 * 24.96687 * 6 4 2 34 34 H 1.07999 * 120.86532 * 359.97438 * 10 9 7 35 35 H 1.07997 * 120.42507 * 179.97438 * 11 10 9 36 36 H 1.09000 * 115.54731 * 154.41222 * 14 13 12 37 37 H 1.09004 * 117.50249 * 359.97438 * 15 14 13 38 38 H 1.09000 * 117.50444 * 145.01676 * 15 14 13 39 39 H 1.09001 * 117.49718 * 214.97122 * 16 14 13 40 40 H 1.08993 * 117.49734 * 359.97438 * 16 14 13 41 41 H 1.08998 * 109.46392 * 301.21691 * 18 4 2 42 42 H 1.09006 * 109.44302 * 181.24916 * 18 4 2 43 43 H 1.09000 * 109.50016 * 178.68299 * 19 18 4 44 44 H 1.08994 * 109.52594 * 58.59613 * 19 18 4 45 45 H 1.08994 * 109.59046 * 294.85065 * 20 19 18 46 46 H 1.08998 * 109.70276 * 174.49027 * 20 19 18 47 47 H 0.97006 * 119.99785 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2455 5 1 1.5964 -1.7168 -1.2942 6 7 1.6679 0.0382 -2.4410 7 6 1.5442 -0.5890 -3.6274 8 8 1.7409 -1.7853 -3.7055 9 6 1.1675 0.1819 -4.8389 10 6 1.0357 -0.4559 -6.0730 11 6 0.6822 0.3105 -7.1743 12 7 0.4834 1.6082 -7.0187 13 6 0.6165 2.1796 -5.8376 14 6 0.3797 3.6626 -5.7115 15 6 -0.2029 4.3906 -6.9246 16 6 1.2657 4.5927 -6.5426 17 7 0.9451 1.4918 -4.7650 18 6 3.5638 -0.8461 -1.1726 19 6 3.9523 -1.6686 0.0581 20 6 3.4645 -0.9519 1.3210 21 7 2.0225 -0.6995 1.1945 22 6 1.1537 -1.1134 2.1685 23 1 0.1375 -1.3731 1.9108 24 6 1.5789 -1.1994 3.4871 25 7 2.6931 -0.6057 3.8592 26 14 0.5699 -2.1576 4.7334 27 1 -0.3458 -1.2310 5.4463 28 1 -0.2254 -3.1972 4.0320 29 1 1.4787 -2.8062 5.7124 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3633 -1.0276 -0.0063 33 1 1.5105 0.9933 -2.3785 34 1 1.2052 -1.5182 -6.1685 35 1 0.5710 -0.1472 -8.1462 36 1 0.0750 4.0076 -4.7234 37 1 -0.4144 3.7970 -7.8140 38 1 -0.8903 5.2149 -6.7347 39 1 1.5436 5.5499 -6.1015 40 1 2.0201 4.1321 -7.1802 41 1 4.0058 0.1476 -1.0996 42 1 3.9311 -1.3418 -2.0713 43 1 5.0363 -1.7760 0.0965 44 1 3.4909 -2.6543 -0.0020 45 1 3.9928 -0.0049 1.4310 46 1 3.6506 -1.5777 2.1938 47 1 2.9901 -0.6655 4.7807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993917169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:35 Heat of formation + Delta-G solvation = 60.776342 kcal Electronic energy + Delta-G solvation = -28286.456584 eV Core-core repulsion = 24470.813024 eV Total energy + Delta-G solvation = -3815.643560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56200 -39.67051 -37.77977 -37.21641 -34.55887 -34.01782 -32.55243 -32.06361 -31.64701 -29.30962 -26.59246 -25.63493 -25.29647 -24.94450 -22.79644 -22.64878 -21.53399 -20.71210 -20.30834 -19.46475 -18.18809 -17.88775 -16.42433 -16.13393 -15.73418 -15.66608 -15.57841 -14.98711 -14.89716 -14.44199 -14.33530 -13.95601 -13.76175 -13.60285 -13.36394 -12.82497 -12.57089 -12.56437 -11.86017 -11.74968 -11.55493 -11.31963 -11.24086 -11.14765 -11.03540 -10.94025 -10.81226 -10.74919 -10.59889 -10.43614 -10.31012 -10.10701 -10.05194 -9.77328 -9.62860 -9.55314 -9.36880 -8.74603 -8.46790 -6.68311 -5.80658 -3.24770 0.26265 0.59706 2.65442 2.98189 3.32891 3.36502 3.38582 3.44325 3.46929 3.66321 3.87181 4.36453 4.48176 4.51309 4.55411 4.67190 4.68581 4.84335 5.18781 5.26753 5.33135 5.33414 5.41119 5.49298 5.51490 5.57287 5.75178 5.76520 5.86221 5.94240 5.96093 6.06246 6.19806 6.30549 6.40920 6.49655 6.51411 6.59012 6.67240 6.73406 6.82184 6.97244 7.04806 7.38153 7.55642 7.65664 7.74773 7.80980 8.20749 8.43676 9.19020 9.81605 10.38111 11.28303 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.002697 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.840139 B =10381.251050 C =10850.774043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.128 3.872 5 H 0.089 0.911 6 N -0.690 5.690 7 C 0.564 3.436 8 O -0.527 6.527 9 C 0.143 3.857 10 C -0.180 4.180 11 C 0.153 3.847 12 N -0.507 5.507 13 C 0.349 3.651 14 C -0.104 4.104 15 C -0.153 4.153 16 C -0.154 4.154 17 N -0.489 5.489 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.581 5.581 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.278 1.278 29 H -0.290 1.290 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.408 0.592 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.088 0.912 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 7.055 -21.763 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.047 0.953 4 C 0.022 3.978 5 H 0.107 0.893 6 N -0.339 5.339 7 C 0.347 3.653 8 O -0.403 6.403 9 C -0.005 4.005 10 C -0.203 4.203 11 C -0.015 4.015 12 N -0.222 5.222 13 C 0.082 3.918 14 C -0.124 4.124 15 C -0.191 4.191 16 C -0.193 4.193 17 N -0.206 5.206 18 C -0.156 4.156 19 C -0.179 4.179 20 C 0.044 3.956 21 N -0.304 5.304 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.204 1.204 29 H -0.216 1.216 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.151 0.849 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.106 0.894 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.573 7.123 -21.444 22.742 hybrid contribution -0.289 -1.015 0.634 1.231 sum -2.862 6.109 -20.810 21.876 Atomic orbital electron populations 1.21833 0.95594 1.01648 1.00428 1.20463 0.93331 0.93698 0.86492 0.95318 1.21854 0.95434 0.96836 0.83640 0.89331 1.46032 1.67219 1.13093 1.07595 1.17765 0.78436 0.86496 0.82621 1.90800 1.50697 1.13723 1.85052 1.21841 0.93944 0.89923 0.94792 1.22986 1.00179 1.03912 0.93229 1.23316 0.90189 0.88751 0.99203 1.68040 1.15121 1.12490 1.26516 1.22097 0.90507 0.95760 0.83473 1.20671 1.07916 0.85067 0.98717 1.23046 0.96069 1.01817 0.98121 1.23006 0.94377 0.99900 1.01992 1.68077 1.12182 1.07044 1.33261 1.21770 0.95054 1.00262 0.98483 1.22182 0.99317 0.99657 0.96793 1.20843 0.83117 0.97264 0.94420 1.44024 1.03215 1.65061 1.18146 1.19159 0.94976 1.37962 0.86099 0.91207 1.25074 0.97852 0.99542 0.96927 1.70029 1.23851 1.43914 1.16766 0.86304 0.79402 0.79942 0.81268 1.21462 1.20381 1.21568 0.91614 0.94249 0.92687 0.75644 0.82125 0.80603 0.84943 0.87234 0.88044 0.87731 0.88584 0.92572 0.93154 0.92893 0.92443 0.96222 0.89351 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.82 37.16 0.29 -2.30 16 2 C 0.17 3.40 3.02 -67.82 -0.20 3.20 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 4 C 0.13 2.33 1.97 -68.03 -0.13 2.19 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 6 N -0.69 -10.74 4.57 -54.65 -0.25 -10.99 16 7 C 0.56 8.86 7.80 -12.05 -0.09 8.77 16 8 O -0.53 -9.64 16.09 5.38 0.09 -9.55 16 9 C 0.14 1.90 6.79 -82.63 -0.56 1.34 16 10 C -0.18 -1.92 9.72 -38.90 -0.38 -2.30 16 11 C 0.15 1.34 11.31 -17.20 -0.19 1.15 16 12 N -0.51 -5.30 9.33 -10.74 -0.10 -5.40 16 13 C 0.35 3.96 7.31 -157.30 -1.15 2.81 16 14 C -0.10 -0.93 6.23 -91.77 -0.57 -1.50 16 15 C -0.15 -1.07 10.01 -26.69 -0.27 -1.34 16 16 C -0.15 -1.12 10.24 -26.69 -0.27 -1.39 16 17 N -0.49 -6.24 9.60 -7.32 -0.07 -6.31 16 18 C -0.12 -2.11 5.46 -26.69 -0.15 -2.26 16 19 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 20 C 0.17 3.97 5.29 -3.71 -0.02 3.95 16 21 N -0.58 -14.10 2.99 -165.03 -0.49 -14.60 16 22 C -0.25 -6.69 8.58 -15.06 -0.13 -6.82 16 23 H 0.07 1.81 6.22 -52.48 -0.33 1.49 16 24 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 25 N -0.90 -25.65 11.22 55.49 0.62 -25.02 16 26 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.06 1.31 7.62 -51.93 -0.40 0.92 16 31 H 0.04 0.63 7.79 -51.93 -0.40 0.22 16 32 H 0.05 1.08 7.44 -51.93 -0.39 0.69 16 33 H 0.41 5.80 7.99 -40.82 -0.33 5.47 16 34 H 0.16 1.53 7.74 -52.49 -0.41 1.12 16 35 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.11 0.84 7.54 -51.93 -0.39 0.44 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 2.32 6.12 -51.93 -0.32 2.00 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -30.80 381.09 -10.70 -41.50 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.13 Total: 5.56 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -4.08 Total: 2.66 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.29 Total: -62.32 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.80 -10.70 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993917169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.280 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds