Wall clock time and date at job start Tue Mar 31 2020 17:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69792 * 2 1 4 4 C 1.52761 * 109.50851 * 239.88434 * 2 1 3 5 5 H 1.08996 * 109.38501 * 305.62918 * 4 2 1 6 6 N 1.46501 * 109.56646 * 65.66919 * 4 2 1 7 7 C 1.34772 * 119.99968 * 204.96313 * 6 4 2 8 8 O 1.21484 * 120.00179 * 0.02562 * 7 6 4 9 9 C 1.48456 * 119.99941 * 180.02562 * 7 6 4 10 10 C 1.39539 * 120.55144 * 180.02562 * 9 7 6 11 11 C 1.38757 * 118.26552 * 180.02562 * 10 9 7 12 12 N 1.32203 * 119.14823 * 359.97438 * 11 10 9 13 13 C 1.31882 * 121.03336 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.04049 * 179.97438 * 13 12 11 15 15 C 1.52999 * 117.49625 * 8.75550 * 14 13 12 16 16 C 1.52999 * 117.50005 * 300.09200 * 14 13 12 17 17 N 1.31582 * 121.92078 * 359.71409 * 13 12 11 18 18 C 1.53043 * 109.38017 * 185.70517 * 4 2 1 19 19 C 1.53040 * 109.53972 * 61.24196 * 18 4 2 20 20 C 1.53192 * 109.30986 * 298.63069 * 19 18 4 21 21 N 1.46927 * 109.58700 * 120.35375 * 2 1 3 22 22 C 1.36929 * 120.63002 * 353.41827 * 21 2 1 23 23 H 1.08007 * 119.99926 * 29.33165 * 22 21 2 24 24 C 1.38813 * 120.00233 * 209.32424 * 22 21 2 25 25 N 1.31615 * 119.99447 * 15.60322 * 24 22 21 26 26 Si 1.86801 * 120.00297 * 195.59663 * 24 22 21 27 27 H 1.48498 * 109.47227 * 265.66148 * 26 24 22 28 28 H 1.48505 * 109.46871 * 25.65865 * 26 24 22 29 29 H 1.48498 * 109.46889 * 145.65551 * 26 24 22 30 30 H 1.09005 * 109.47259 * 299.64533 * 1 2 3 31 31 H 1.09007 * 109.47258 * 59.64536 * 1 2 3 32 32 H 1.08996 * 109.47153 * 179.64688 * 1 2 3 33 33 H 0.96999 * 119.99483 * 24.96687 * 6 4 2 34 34 H 1.07999 * 120.86532 * 359.97438 * 10 9 7 35 35 H 1.07997 * 120.42507 * 179.97438 * 11 10 9 36 36 H 1.09000 * 115.54731 * 154.41222 * 14 13 12 37 37 H 1.09004 * 117.50249 * 359.97438 * 15 14 13 38 38 H 1.09000 * 117.50444 * 145.01676 * 15 14 13 39 39 H 1.09001 * 117.49718 * 214.97122 * 16 14 13 40 40 H 1.08993 * 117.49734 * 359.97438 * 16 14 13 41 41 H 1.08998 * 109.46392 * 301.21691 * 18 4 2 42 42 H 1.09006 * 109.44302 * 181.24916 * 18 4 2 43 43 H 1.09000 * 109.50016 * 178.68299 * 19 18 4 44 44 H 1.08994 * 109.52594 * 58.59613 * 19 18 4 45 45 H 1.08994 * 109.59046 * 294.85065 * 20 19 18 46 46 H 1.08998 * 109.70276 * 174.49027 * 20 19 18 47 47 H 0.97006 * 119.99785 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2455 5 1 1.5964 -1.7168 -1.2942 6 7 1.6679 0.0382 -2.4410 7 6 1.5442 -0.5890 -3.6274 8 8 1.7409 -1.7853 -3.7055 9 6 1.1675 0.1819 -4.8389 10 6 1.0357 -0.4559 -6.0730 11 6 0.6822 0.3105 -7.1743 12 7 0.4834 1.6082 -7.0187 13 6 0.6165 2.1796 -5.8376 14 6 0.3797 3.6626 -5.7115 15 6 -0.2029 4.3906 -6.9246 16 6 1.2657 4.5927 -6.5426 17 7 0.9451 1.4918 -4.7650 18 6 3.5638 -0.8461 -1.1726 19 6 3.9523 -1.6686 0.0581 20 6 3.4645 -0.9519 1.3210 21 7 2.0225 -0.6995 1.1945 22 6 1.1537 -1.1134 2.1685 23 1 0.1375 -1.3731 1.9108 24 6 1.5789 -1.1994 3.4871 25 7 2.6931 -0.6057 3.8592 26 14 0.5699 -2.1576 4.7334 27 1 -0.3458 -1.2310 5.4463 28 1 -0.2254 -3.1972 4.0320 29 1 1.4787 -2.8062 5.7124 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3633 -1.0276 -0.0063 33 1 1.5105 0.9933 -2.3785 34 1 1.2052 -1.5182 -6.1685 35 1 0.5710 -0.1472 -8.1462 36 1 0.0750 4.0076 -4.7234 37 1 -0.4144 3.7970 -7.8140 38 1 -0.8903 5.2149 -6.7347 39 1 1.5436 5.5499 -6.1015 40 1 2.0201 4.1321 -7.1802 41 1 4.0058 0.1476 -1.0996 42 1 3.9311 -1.3418 -2.0713 43 1 5.0363 -1.7760 0.0965 44 1 3.4909 -2.6543 -0.0020 45 1 3.9928 -0.0049 1.4310 46 1 3.6506 -1.5777 2.1938 47 1 2.9901 -0.6655 4.7807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993917169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:34 Heat of formation + Delta-G solvation = 42.728008 kcal Electronic energy + Delta-G solvation = -28287.239219 eV Core-core repulsion = 24470.813024 eV Total energy + Delta-G solvation = -3816.426195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.43160 -40.97648 -39.29733 -37.91061 -36.04819 -35.05942 -34.19726 -33.41519 -32.88137 -31.01961 -28.10323 -27.05197 -26.53223 -26.07921 -24.11804 -23.20662 -22.72546 -22.34235 -21.49666 -21.02764 -19.27179 -18.78575 -18.24765 -17.31168 -16.93926 -16.69552 -16.57285 -16.53240 -15.86429 -15.68318 -15.60717 -15.29060 -15.17775 -14.89367 -14.81370 -14.52603 -14.30228 -13.37654 -13.29609 -13.22018 -12.81920 -12.75738 -12.53844 -12.41649 -12.39029 -12.06971 -12.04153 -11.96816 -11.90421 -11.89303 -11.79673 -11.73073 -11.47971 -11.35055 -11.16935 -10.53857 -10.44923 -10.37324 -10.11865 -8.66521 -7.86407 -5.32378 -0.65842 -0.17117 1.46217 1.48754 1.57572 1.58003 1.80909 2.49608 2.52865 2.58146 2.89567 3.16253 3.29553 3.43476 3.64411 3.65767 3.84978 3.91933 3.94458 3.98219 4.12823 4.16671 4.18365 4.32657 4.46274 4.51116 4.58411 4.59088 4.72635 4.82319 4.86100 4.87857 4.98656 5.00262 5.10927 5.13162 5.14843 5.22179 5.23891 5.34543 5.38337 5.42057 5.55075 5.70007 5.72165 5.75822 6.35619 6.41304 6.85874 6.99012 7.15977 7.85071 8.37276 9.21033 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.002697 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.840139 B =10381.251050 C =10850.774043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.030 0.970 4 C 0.144 3.856 5 H 0.066 0.934 6 N -0.685 5.685 7 C 0.567 3.433 8 O -0.556 6.556 9 C 0.121 3.879 10 C -0.178 4.178 11 C 0.165 3.835 12 N -0.510 5.510 13 C 0.339 3.661 14 C -0.125 4.125 15 C -0.140 4.140 16 C -0.147 4.147 17 N -0.505 5.505 18 C -0.110 4.110 19 C -0.128 4.128 20 C 0.175 3.825 21 N -0.599 5.599 22 C -0.255 4.255 23 H 0.072 0.928 24 C -0.047 4.047 25 N -0.933 5.933 26 Si 0.961 3.039 27 H -0.286 1.286 28 H -0.272 1.272 29 H -0.294 1.294 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.416 0.584 34 H 0.171 0.829 35 H 0.221 0.779 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.003 0.997 46 H 0.056 0.944 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 7.709 -24.385 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.048 0.952 4 C 0.038 3.962 5 H 0.085 0.915 6 N -0.335 5.335 7 C 0.351 3.649 8 O -0.434 6.434 9 C -0.026 4.026 10 C -0.201 4.201 11 C -0.002 4.002 12 N -0.224 5.224 13 C 0.072 3.928 14 C -0.145 4.145 15 C -0.177 4.177 16 C -0.185 4.185 17 N -0.222 5.222 18 C -0.148 4.148 19 C -0.168 4.168 20 C 0.050 3.950 21 N -0.323 5.323 22 C -0.385 4.385 23 H 0.090 0.910 24 C -0.243 4.243 25 N -0.579 5.579 26 Si 0.790 3.210 27 H -0.212 1.212 28 H -0.197 1.197 29 H -0.220 1.220 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.253 0.747 34 H 0.189 0.811 35 H 0.237 0.763 36 H 0.152 0.848 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.403 7.801 -24.093 25.552 hybrid contribution -0.057 -1.170 1.318 1.764 sum -3.460 6.631 -22.775 23.971 Atomic orbital electron populations 1.21727 0.94504 1.01154 1.01120 1.20588 0.94274 0.93460 0.85835 0.95210 1.21383 0.95376 0.95622 0.83814 0.91531 1.45835 1.67411 1.13234 1.06971 1.18096 0.77388 0.86275 0.83103 1.90778 1.51946 1.15056 1.85615 1.21524 0.96192 0.90423 0.94472 1.23192 0.99599 1.04568 0.92734 1.24031 0.87909 0.87998 1.00279 1.68156 1.15048 1.13241 1.25998 1.22556 0.90118 0.96718 0.83413 1.20810 1.09862 0.84157 0.99648 1.23106 0.96280 1.01595 0.96758 1.23070 0.94376 0.99910 1.01181 1.68020 1.13073 1.06891 1.34223 1.21695 0.94859 1.00432 0.97845 1.22013 1.00513 0.98777 0.95476 1.20652 0.83078 0.96174 0.95134 1.44252 1.03285 1.65778 1.18950 1.19439 0.95315 1.37035 0.86704 0.91032 1.25763 0.99054 1.00802 0.98647 1.70169 1.25447 1.45528 1.16727 0.85356 0.77952 0.78708 0.79004 1.21239 1.19705 1.21999 0.93029 0.91342 0.93733 0.74708 0.81147 0.76287 0.84806 0.87738 0.86219 0.86137 0.89264 0.91767 0.92285 0.90683 0.93306 0.97863 0.92532 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 7.82 71.98 0.56 -4.20 16 2 C 0.17 6.69 3.02 44.83 0.14 6.83 16 3 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.14 5.21 1.97 44.93 0.09 5.30 16 5 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 6 N -0.68 -20.80 4.57 -445.14 -2.03 -22.83 16 7 C 0.57 17.39 7.80 86.97 0.68 18.07 16 8 O -0.56 -20.06 16.09 -3.67 -0.06 -20.12 16 9 C 0.12 3.06 6.79 42.00 0.29 3.34 16 10 C -0.18 -3.42 9.72 22.71 0.22 -3.20 16 11 C 0.17 2.41 11.31 84.76 0.96 3.37 16 12 N -0.51 -9.41 9.33 -187.89 -1.75 -11.16 16 13 C 0.34 7.13 7.31 138.79 1.01 8.14 16 14 C -0.12 -2.01 6.23 -11.54 -0.07 -2.09 16 15 C -0.14 -1.63 10.01 30.62 0.31 -1.33 16 16 C -0.15 -1.82 10.24 30.62 0.31 -1.50 16 17 N -0.51 -12.30 9.60 -177.07 -1.70 -13.99 16 18 C -0.11 -3.87 5.46 30.62 0.17 -3.70 16 19 C -0.13 -5.00 6.08 30.67 0.19 -4.81 16 20 C 0.18 8.43 5.29 86.36 0.46 8.88 16 21 N -0.60 -29.57 2.99 -676.02 -2.02 -31.59 16 22 C -0.25 -13.71 8.58 84.04 0.72 -12.99 16 23 H 0.07 3.75 6.22 -2.91 -0.02 3.74 16 24 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 25 N -0.93 -54.54 11.22 21.65 0.24 -54.30 16 26 Si 0.96 44.80 29.58 68.60 2.03 46.83 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 30 H 0.05 2.05 7.62 -2.38 -0.02 2.03 16 31 H 0.07 2.12 7.79 -2.38 -0.02 2.10 16 32 H 0.04 1.74 7.44 -2.39 -0.02 1.72 16 33 H 0.42 11.42 7.99 -92.71 -0.74 10.68 16 34 H 0.17 2.89 7.74 -2.91 -0.02 2.87 16 35 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.13 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.10 1.35 7.54 -2.39 -0.02 1.33 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.06 3.08 6.12 -2.39 -0.01 3.06 16 47 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -67.65 381.09 1.39 -66.25 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.25 Total: 22.99 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.44 Total: 17.93 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -7.27 Total: -133.88 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.06 Total: -20.12 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -67.65 1.39 -66.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993917169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.981 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds