Wall clock time and date at job start Tue Mar 31 2020 17:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.69994 * 2 1 4 4 C 1.53197 * 109.58619 * 239.64672 * 2 1 3 5 5 H 1.09001 * 109.49317 * 65.59029 * 4 2 1 6 6 N 1.46504 * 109.49657 * 305.52583 * 4 2 1 7 7 C 1.34769 * 119.99767 * 155.06273 * 6 4 2 8 8 O 1.21556 * 120.00153 * 0.02562 * 7 6 4 9 9 C 1.47835 * 119.99841 * 180.02562 * 7 6 4 10 10 C 1.39944 * 120.94173 * 359.72294 * 9 7 6 11 11 N 1.32142 * 118.92837 * 179.69442 * 10 9 7 12 12 C 1.31872 * 120.96203 * 0.61671 * 11 10 9 13 13 C 1.50700 * 118.95021 * 179.67656 * 12 11 10 14 14 C 1.52998 * 117.50079 * 8.60024 * 13 12 11 15 15 C 1.52997 * 60.00033 * 252.50913 * 14 13 12 16 16 N 1.31866 * 122.09872 * 359.65545 * 12 11 10 17 17 C 1.32148 * 120.96706 * 0.02562 * 16 12 11 18 18 C 1.53035 * 109.33813 * 185.56025 * 4 2 1 19 19 C 1.53037 * 109.53893 * 61.38220 * 18 4 2 20 20 C 1.53194 * 109.31331 * 298.63171 * 19 18 4 21 21 N 1.46923 * 108.77511 * 54.63556 * 20 19 18 22 22 C 1.36935 * 120.63241 * 126.40921 * 21 20 19 23 23 H 1.07996 * 120.00189 * 208.56985 * 22 21 20 24 24 C 1.38814 * 119.99660 * 28.58076 * 22 21 20 25 25 N 1.31616 * 120.00344 * 14.41592 * 24 22 21 26 26 Si 1.86800 * 119.99963 * 194.42527 * 24 22 21 27 27 H 1.48507 * 109.47128 * 59.99563 * 26 24 22 28 28 H 1.48501 * 109.47500 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47162 * 299.99658 * 26 24 22 30 30 H 1.09009 * 109.46936 * 180.35871 * 1 2 3 31 31 H 1.09001 * 109.47022 * 300.34762 * 1 2 3 32 32 H 1.08997 * 109.47627 * 60.35346 * 1 2 3 33 33 H 0.97003 * 119.99811 * 335.06724 * 6 4 2 34 34 H 1.08007 * 120.53451 * 359.97438 * 10 9 7 35 35 H 1.09005 * 115.55322 * 154.30646 * 13 12 11 36 36 H 1.09001 * 117.49741 * 359.97438 * 14 13 12 37 37 H 1.09002 * 117.49785 * 145.01772 * 14 13 12 38 38 H 1.09003 * 117.49496 * 252.50789 * 15 14 13 39 39 H 1.08997 * 117.52006 * 107.47786 * 15 14 13 40 40 H 1.07996 * 120.54059 * 180.02562 * 17 16 12 41 41 H 1.09002 * 109.45814 * 181.40305 * 18 4 2 42 42 H 1.09005 * 109.46074 * 301.37414 * 18 4 2 43 43 H 1.09001 * 109.50044 * 58.58964 * 19 18 4 44 44 H 1.09005 * 109.49868 * 178.68195 * 19 18 4 45 45 H 1.08998 * 109.58747 * 174.42430 * 20 19 18 46 46 H 1.09008 * 109.58487 * 294.84765 * 20 19 18 47 47 H 0.97000 * 120.00518 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 1 1.7654 -0.1670 -2.1369 6 7 1.4514 -2.0680 -1.3072 7 6 1.3295 -2.6969 -2.4929 8 8 1.7114 -2.1537 -3.5111 9 6 0.7315 -4.0474 -2.5552 10 6 0.2907 -4.6934 -1.3947 11 7 -0.2433 -5.8978 -1.4972 12 6 -0.3521 -6.4943 -2.6682 13 6 -0.9617 -7.8710 -2.7317 14 6 -1.6050 -8.4184 -1.4560 15 6 -0.2711 -8.9865 -1.9445 16 7 0.0553 -5.9244 -3.7854 17 6 0.5956 -4.7185 -3.7758 18 6 3.5675 -0.8479 -1.1710 19 6 3.9576 -1.6659 0.0621 20 6 3.4664 -0.9475 1.3229 21 7 2.0239 -0.7001 1.1945 22 6 1.1556 -1.1136 2.1693 23 1 0.1357 -1.3611 1.9145 24 6 1.5862 -1.2143 3.4851 25 7 2.7195 -0.6541 3.8514 26 14 0.5575 -2.1451 4.7359 27 1 0.4047 -3.5563 4.2993 28 1 1.2318 -2.1069 6.0584 29 1 -0.7818 -1.5128 4.8443 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5192 0.8869 32 1 -0.3634 0.5083 -0.8931 33 1 1.1470 -2.5016 -0.4946 34 1 0.3813 -4.2135 -0.4314 35 1 -1.4231 -8.1375 -3.6827 36 1 -1.5870 -7.7828 -0.5707 37 1 -2.4900 -9.0449 -1.5675 38 1 -0.2785 -9.9869 -2.3774 39 1 0.6244 -8.7247 -1.3811 40 1 0.9265 -4.2581 -4.6950 41 1 3.9373 -1.3445 -2.0681 42 1 4.0061 0.1475 -1.0999 43 1 3.4991 -2.6531 0.0039 44 1 5.0419 -1.7698 0.1017 45 1 3.6537 -1.5725 2.1960 46 1 3.9918 0.0015 1.4307 47 1 3.0207 -0.7248 4.7707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993939395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:38 Heat of formation + Delta-G solvation = 60.452792 kcal Electronic energy + Delta-G solvation = -28974.331160 eV Core-core repulsion = 25158.673569 eV Total energy + Delta-G solvation = -3815.657591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.42902 -39.69598 -37.76205 -37.11636 -34.31790 -33.79383 -32.69023 -32.13803 -31.48357 -29.40988 -26.58485 -25.76727 -25.07533 -24.70503 -22.59021 -22.50975 -21.69657 -20.91779 -20.52316 -18.93837 -18.04453 -17.76664 -16.85376 -16.47963 -15.62716 -15.38326 -15.21635 -14.90860 -14.60509 -14.37784 -14.26457 -13.98380 -13.65145 -13.49464 -13.15869 -13.05732 -12.63393 -12.47455 -11.93438 -11.81497 -11.62312 -11.36927 -11.32389 -11.12312 -11.03141 -11.02072 -10.77366 -10.74526 -10.70459 -10.60212 -10.18836 -10.08471 -9.80333 -9.71835 -9.50851 -9.43925 -9.37659 -8.67636 -8.53680 -6.76675 -5.87750 -3.33988 0.29177 0.88903 2.82531 3.30068 3.30930 3.37177 3.38541 3.43821 3.52511 3.79387 3.99039 4.34451 4.38782 4.59388 4.66854 4.74383 4.77869 4.93742 5.12794 5.23157 5.26170 5.40056 5.48511 5.51943 5.55852 5.60860 5.66797 5.82889 5.87985 5.98193 6.02422 6.10899 6.13633 6.23725 6.33076 6.45572 6.55943 6.60268 6.69952 6.72096 6.85914 6.86415 6.97611 7.31993 7.61250 7.70070 7.76888 7.86096 8.33940 8.37130 9.10815 9.73537 10.29941 11.19697 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.004080 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.269291 B = 6860.353902 C = 8607.329190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.079 0.921 6 N -0.691 5.691 7 C 0.563 3.437 8 O -0.545 6.545 9 C -0.243 4.243 10 C 0.190 3.810 11 N -0.517 5.517 12 C 0.362 3.638 13 C -0.107 4.107 14 C -0.152 4.152 15 C -0.154 4.154 16 N -0.520 5.520 17 C 0.208 3.792 18 C -0.121 4.121 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.587 5.587 22 C -0.260 4.260 23 H 0.071 0.929 24 C 0.008 3.992 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.407 0.593 34 H 0.177 0.823 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.181 0.819 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.018 0.982 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -10.190 -11.168 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 H 0.059 0.941 4 C 0.028 3.972 5 H 0.097 0.903 6 N -0.341 5.341 7 C 0.348 3.652 8 O -0.424 6.424 9 C -0.250 4.250 10 C 0.023 3.977 11 N -0.230 5.230 12 C 0.096 3.904 13 C -0.127 4.127 14 C -0.190 4.190 15 C -0.192 4.192 16 N -0.233 5.233 17 C 0.041 3.959 18 C -0.160 4.160 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.311 5.311 22 C -0.389 4.389 23 H 0.088 0.912 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.245 0.755 34 H 0.194 0.806 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.198 0.802 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.036 0.964 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.639 -10.658 -11.714 16.502 hybrid contribution -0.079 0.364 1.168 1.226 sum -4.719 -10.294 -10.545 15.474 Atomic orbital electron populations 1.21790 0.95597 1.01386 1.00612 1.20745 0.93343 0.94031 0.86767 0.94051 1.21627 0.93046 0.82382 1.00127 0.90273 1.45932 1.60844 1.18817 1.08555 1.17736 0.78953 0.84192 0.84337 1.90750 1.50615 1.66793 1.34289 1.21908 1.07216 0.98833 0.97052 1.23619 0.86443 0.89068 0.98555 1.68167 1.16383 1.10349 1.28113 1.22378 0.89394 0.94816 0.83769 1.20684 1.05505 0.87846 0.98688 1.23060 0.96248 1.02577 0.97079 1.23000 0.97443 0.96567 1.02193 1.68255 1.12771 1.10999 1.31273 1.23464 0.86817 0.87899 0.97708 1.21779 0.95228 1.00658 0.98331 1.22153 0.99049 0.99435 0.97354 1.20850 0.82998 0.97304 0.94409 1.44204 1.03188 1.64843 1.18838 1.19112 0.94608 1.38761 0.86454 0.91173 1.25083 0.97586 0.99509 0.96958 1.69990 1.22505 1.44635 1.17183 0.86428 0.79721 0.80077 0.80850 1.20906 1.21671 1.20887 0.92942 0.91656 0.94088 0.75532 0.80614 0.85168 0.86914 0.88057 0.87816 0.88404 0.80168 0.93045 0.91697 0.93034 0.93366 0.89161 0.96385 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.72 37.16 0.29 -2.04 16 2 C 0.16 2.95 3.20 -67.56 -0.22 2.73 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.24 2.32 -67.81 -0.16 2.08 16 5 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 6 N -0.69 -10.81 3.42 -54.63 -0.19 -11.00 16 7 C 0.56 8.77 7.75 -12.34 -0.10 8.67 16 8 O -0.55 -9.76 16.11 5.32 0.09 -9.67 16 9 C -0.24 -3.34 5.91 -104.69 -0.62 -3.96 16 10 C 0.19 2.53 10.81 -16.78 -0.18 2.35 16 11 N -0.52 -6.96 9.32 -10.39 -0.10 -7.06 16 12 C 0.36 4.66 7.31 -157.07 -1.15 3.51 16 13 C -0.11 -1.07 6.23 -91.77 -0.57 -1.64 16 14 C -0.15 -1.30 10.01 -26.73 -0.27 -1.57 16 15 C -0.15 -1.30 10.23 -26.73 -0.27 -1.57 16 16 N -0.52 -6.93 10.31 -10.39 -0.11 -7.04 16 17 C 0.21 2.73 10.88 -16.77 -0.18 2.55 16 18 C -0.12 -2.04 5.58 -26.69 -0.15 -2.19 16 19 C -0.14 -2.55 5.93 -26.61 -0.16 -2.70 16 20 C 0.17 3.71 5.29 -3.71 -0.02 3.69 16 21 N -0.59 -12.82 2.65 -164.72 -0.44 -13.26 16 22 C -0.26 -6.23 8.63 -15.06 -0.13 -6.36 16 23 H 0.07 1.62 6.18 -52.49 -0.32 1.29 16 24 C 0.01 0.20 4.98 -17.43 -0.09 0.12 16 25 N -0.90 -24.37 11.07 55.49 0.61 -23.75 16 26 Si 0.90 20.25 29.58 -169.99 -5.03 15.22 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.05 0.88 6.38 -51.92 -0.33 0.54 16 31 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.41 6.42 5.91 -40.82 -0.24 6.17 16 34 H 0.18 2.16 6.54 -52.48 -0.34 1.82 16 35 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.13 7.53 -51.93 -0.39 0.74 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.18 2.11 7.74 -52.49 -0.41 1.70 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.09 2.24 6.01 -51.93 -0.31 1.93 16 46 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -28.34 375.34 -10.36 -38.70 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.89 Total: 8.53 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -3.97 Total: 3.68 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.21 Total: -62.11 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.34 -10.36 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993939395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.152 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds