Wall clock time and date at job start Tue Mar 31 2020 17:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.69994 * 2 1 4 4 C 1.53197 * 109.58619 * 239.64672 * 2 1 3 5 5 H 1.09001 * 109.49317 * 65.59029 * 4 2 1 6 6 N 1.46504 * 109.49657 * 305.52583 * 4 2 1 7 7 C 1.34769 * 119.99767 * 155.06273 * 6 4 2 8 8 O 1.21556 * 120.00153 * 0.02562 * 7 6 4 9 9 C 1.47835 * 119.99841 * 180.02562 * 7 6 4 10 10 C 1.39944 * 120.94173 * 359.72294 * 9 7 6 11 11 N 1.32142 * 118.92837 * 179.69442 * 10 9 7 12 12 C 1.31872 * 120.96203 * 0.61671 * 11 10 9 13 13 C 1.50700 * 118.95021 * 179.67656 * 12 11 10 14 14 C 1.52998 * 117.50079 * 8.60024 * 13 12 11 15 15 C 1.52997 * 60.00033 * 252.50913 * 14 13 12 16 16 N 1.31866 * 122.09872 * 359.65545 * 12 11 10 17 17 C 1.32148 * 120.96706 * 0.02562 * 16 12 11 18 18 C 1.53035 * 109.33813 * 185.56025 * 4 2 1 19 19 C 1.53037 * 109.53893 * 61.38220 * 18 4 2 20 20 C 1.53194 * 109.31331 * 298.63171 * 19 18 4 21 21 N 1.46923 * 108.77511 * 54.63556 * 20 19 18 22 22 C 1.36935 * 120.63241 * 126.40921 * 21 20 19 23 23 H 1.07996 * 120.00189 * 208.56985 * 22 21 20 24 24 C 1.38814 * 119.99660 * 28.58076 * 22 21 20 25 25 N 1.31616 * 120.00344 * 14.41592 * 24 22 21 26 26 Si 1.86800 * 119.99963 * 194.42527 * 24 22 21 27 27 H 1.48507 * 109.47128 * 59.99563 * 26 24 22 28 28 H 1.48501 * 109.47500 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47162 * 299.99658 * 26 24 22 30 30 H 1.09009 * 109.46936 * 180.35871 * 1 2 3 31 31 H 1.09001 * 109.47022 * 300.34762 * 1 2 3 32 32 H 1.08997 * 109.47627 * 60.35346 * 1 2 3 33 33 H 0.97003 * 119.99811 * 335.06724 * 6 4 2 34 34 H 1.08007 * 120.53451 * 359.97438 * 10 9 7 35 35 H 1.09005 * 115.55322 * 154.30646 * 13 12 11 36 36 H 1.09001 * 117.49741 * 359.97438 * 14 13 12 37 37 H 1.09002 * 117.49785 * 145.01772 * 14 13 12 38 38 H 1.09003 * 117.49496 * 252.50789 * 15 14 13 39 39 H 1.08997 * 117.52006 * 107.47786 * 15 14 13 40 40 H 1.07996 * 120.54059 * 180.02562 * 17 16 12 41 41 H 1.09002 * 109.45814 * 181.40305 * 18 4 2 42 42 H 1.09005 * 109.46074 * 301.37414 * 18 4 2 43 43 H 1.09001 * 109.50044 * 58.58964 * 19 18 4 44 44 H 1.09005 * 109.49868 * 178.68195 * 19 18 4 45 45 H 1.08998 * 109.58747 * 174.42430 * 20 19 18 46 46 H 1.09008 * 109.58487 * 294.84765 * 20 19 18 47 47 H 0.97000 * 120.00518 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 1 1.7654 -0.1670 -2.1369 6 7 1.4514 -2.0680 -1.3072 7 6 1.3295 -2.6969 -2.4929 8 8 1.7114 -2.1537 -3.5111 9 6 0.7315 -4.0474 -2.5552 10 6 0.2907 -4.6934 -1.3947 11 7 -0.2433 -5.8978 -1.4972 12 6 -0.3521 -6.4943 -2.6682 13 6 -0.9617 -7.8710 -2.7317 14 6 -1.6050 -8.4184 -1.4560 15 6 -0.2711 -8.9865 -1.9445 16 7 0.0553 -5.9244 -3.7854 17 6 0.5956 -4.7185 -3.7758 18 6 3.5675 -0.8479 -1.1710 19 6 3.9576 -1.6659 0.0621 20 6 3.4664 -0.9475 1.3229 21 7 2.0239 -0.7001 1.1945 22 6 1.1556 -1.1136 2.1693 23 1 0.1357 -1.3611 1.9145 24 6 1.5862 -1.2143 3.4851 25 7 2.7195 -0.6541 3.8514 26 14 0.5575 -2.1451 4.7359 27 1 0.4047 -3.5563 4.2993 28 1 1.2318 -2.1069 6.0584 29 1 -0.7818 -1.5128 4.8443 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5192 0.8869 32 1 -0.3634 0.5083 -0.8931 33 1 1.1470 -2.5016 -0.4946 34 1 0.3813 -4.2135 -0.4314 35 1 -1.4231 -8.1375 -3.6827 36 1 -1.5870 -7.7828 -0.5707 37 1 -2.4900 -9.0449 -1.5675 38 1 -0.2785 -9.9869 -2.3774 39 1 0.6244 -8.7247 -1.3811 40 1 0.9265 -4.2581 -4.6950 41 1 3.9373 -1.3445 -2.0681 42 1 4.0061 0.1475 -1.0999 43 1 3.4991 -2.6531 0.0039 44 1 5.0419 -1.7698 0.1017 45 1 3.6537 -1.5725 2.1960 46 1 3.9918 0.0015 1.4307 47 1 3.0207 -0.7248 4.7707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993939395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:37 Heat of formation + Delta-G solvation = 45.844213 kcal Electronic energy + Delta-G solvation = -28974.964636 eV Core-core repulsion = 25158.673569 eV Total energy + Delta-G solvation = -3816.291066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.46149 -41.00418 -39.16633 -37.93415 -35.74198 -35.00192 -34.10523 -33.55082 -32.87630 -30.98100 -28.01375 -26.99702 -26.68987 -25.73534 -23.93171 -23.24089 -22.88117 -22.35074 -21.77006 -20.39035 -19.21040 -18.85457 -18.19025 -17.80284 -17.11312 -16.60231 -16.44167 -16.10467 -15.79533 -15.71096 -15.61445 -15.15899 -15.02083 -14.76199 -14.65202 -14.46728 -14.20511 -13.55920 -13.32951 -12.97042 -12.86733 -12.70951 -12.68099 -12.44093 -12.36112 -12.34512 -12.17700 -12.07135 -11.93340 -11.91884 -11.66828 -11.42388 -11.37373 -11.07068 -11.00386 -10.49587 -10.47144 -10.42997 -9.96965 -8.60709 -7.79698 -5.26274 -0.74402 -0.13086 1.51757 1.53930 1.58374 1.69388 2.07946 2.49985 2.55108 2.62309 2.83901 3.13010 3.32302 3.36894 3.59134 3.60998 3.78532 3.86515 3.94364 4.03424 4.06944 4.07470 4.21803 4.31541 4.40305 4.57157 4.63084 4.66764 4.77822 4.79111 4.91739 4.95625 5.00635 5.04233 5.09972 5.12923 5.17707 5.22781 5.31757 5.35334 5.45353 5.54697 5.61388 5.70831 5.75660 5.83252 6.45548 6.50933 6.84488 7.10605 7.21620 7.91447 8.43784 9.26323 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.004080 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.269291 B = 6860.353902 C = 8607.329190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.144 3.856 5 H 0.087 0.913 6 N -0.689 5.689 7 C 0.571 3.429 8 O -0.568 6.568 9 C -0.251 4.251 10 C 0.192 3.808 11 N -0.528 5.528 12 C 0.357 3.643 13 C -0.123 4.123 14 C -0.145 4.145 15 C -0.145 4.145 16 N -0.528 5.528 17 C 0.211 3.789 18 C -0.116 4.116 19 C -0.127 4.127 20 C 0.178 3.822 21 N -0.597 5.597 22 C -0.247 4.247 23 H 0.082 0.918 24 C -0.046 4.046 25 N -0.935 5.935 26 Si 0.955 3.045 27 H -0.275 1.275 28 H -0.304 1.304 29 H -0.279 1.279 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.408 0.592 34 H 0.183 0.817 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.193 0.807 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.058 0.942 46 H -0.006 1.006 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -11.763 -12.733 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.052 0.948 4 C 0.038 3.962 5 H 0.105 0.895 6 N -0.339 5.339 7 C 0.357 3.643 8 O -0.448 6.448 9 C -0.258 4.258 10 C 0.025 3.975 11 N -0.242 5.242 12 C 0.092 3.908 13 C -0.143 4.143 14 C -0.183 4.183 15 C -0.183 4.183 16 N -0.242 5.242 17 C 0.044 3.956 18 C -0.154 4.154 19 C -0.166 4.166 20 C 0.052 3.948 21 N -0.321 5.321 22 C -0.377 4.377 23 H 0.100 0.900 24 C -0.242 4.242 25 N -0.582 5.582 26 Si 0.784 3.216 27 H -0.201 1.201 28 H -0.231 1.231 29 H -0.205 1.205 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.200 0.800 35 H 0.163 0.837 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.102 0.898 40 H 0.210 0.790 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.012 0.988 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.974 -12.244 -13.304 19.042 hybrid contribution 0.308 0.848 1.595 1.832 sum -5.666 -11.396 -11.709 17.294 Atomic orbital electron populations 1.21719 0.94221 1.01732 1.01011 1.20869 0.94484 0.93570 0.86097 0.94782 1.21421 0.92901 0.82838 0.99081 0.89502 1.45856 1.60853 1.18433 1.08740 1.17841 0.78265 0.84494 0.83688 1.90739 1.51684 1.67503 1.34916 1.21701 1.08402 0.98135 0.97582 1.23745 0.85932 0.89110 0.98716 1.68250 1.16946 1.10441 1.28543 1.23007 0.88542 0.95784 0.83438 1.20902 1.06602 0.86791 1.00029 1.23110 0.97349 1.02253 0.95556 1.23079 0.96777 0.97124 1.01290 1.68348 1.13270 1.11063 1.31481 1.23694 0.86148 0.87847 0.97954 1.21731 0.95370 1.00717 0.97612 1.21961 0.99712 0.98965 0.95955 1.20614 0.83227 0.95866 0.95076 1.44375 1.02958 1.65392 1.19368 1.19463 0.95082 1.36587 0.86609 0.90044 1.25713 0.98664 1.01067 0.98748 1.70151 1.24330 1.46900 1.16788 0.85536 0.78319 0.79361 0.78367 1.20123 1.23138 1.20482 0.92541 0.93360 0.91620 0.75501 0.79992 0.83725 0.88602 0.85590 0.85254 0.89844 0.79029 0.92391 0.91213 0.93059 0.92122 0.92327 0.98760 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 7.72 71.98 0.56 -3.64 16 2 C 0.16 5.64 3.20 44.96 0.14 5.79 16 3 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.14 4.56 2.32 45.07 0.10 4.66 16 5 H 0.09 2.70 7.58 -2.39 -0.02 2.68 16 6 N -0.69 -20.41 3.42 -445.04 -1.52 -21.93 16 7 C 0.57 16.83 7.75 86.78 0.67 17.50 16 8 O -0.57 -19.29 16.11 -3.89 -0.06 -19.36 16 9 C -0.25 -6.55 5.91 -19.91 -0.12 -6.66 16 10 C 0.19 4.86 10.81 85.06 0.92 5.78 16 11 N -0.53 -13.59 9.32 -186.80 -1.74 -15.33 16 12 C 0.36 8.66 7.31 138.70 1.01 9.68 16 13 C -0.12 -2.19 6.23 -11.54 -0.07 -2.26 16 14 C -0.15 -2.16 10.01 30.59 0.31 -1.85 16 15 C -0.14 -2.11 10.23 30.59 0.31 -1.79 16 16 N -0.53 -13.28 10.31 -186.80 -1.93 -15.21 16 17 C 0.21 5.22 10.88 85.06 0.93 6.15 16 18 C -0.12 -3.71 5.58 30.62 0.17 -3.54 16 19 C -0.13 -4.49 5.93 30.67 0.18 -4.31 16 20 C 0.18 7.89 5.29 86.36 0.46 8.35 16 21 N -0.60 -26.00 2.65 -675.05 -1.79 -27.79 16 22 C -0.25 -11.78 8.63 84.03 0.73 -11.06 16 23 H 0.08 3.65 6.18 -2.91 -0.02 3.64 16 24 C -0.05 -2.39 4.98 84.86 0.42 -1.96 16 25 N -0.94 -52.16 11.07 21.65 0.24 -51.92 16 26 Si 0.95 41.96 29.58 68.60 2.03 43.99 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 30 H 0.06 1.77 6.38 -2.38 -0.02 1.76 16 31 H 0.05 1.72 7.66 -2.39 -0.02 1.70 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.41 12.22 5.91 -92.71 -0.55 11.67 16 34 H 0.18 4.26 6.54 -2.91 -0.02 4.24 16 35 H 0.15 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.10 1.79 7.53 -2.39 -0.02 1.77 16 37 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.19 4.19 7.74 -2.91 -0.02 4.17 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.05 1.82 7.53 -2.39 -0.02 1.80 16 44 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.06 2.99 6.01 -2.39 -0.01 2.98 16 46 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 47 H 0.25 13.60 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -60.61 375.34 2.39 -58.22 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.45 Total: 28.49 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 6.72 Total: 20.83 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -6.74 Total: -132.17 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -60.61 2.39 -58.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993939395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.065 kcal (2) G-P(sol) polarization free energy of solvation -60.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds