Wall clock time and date at job start Tue Mar 31 2020 17:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70190 * 2 1 4 4 C 1.53194 * 109.58540 * 120.35488 * 2 1 3 5 5 H 1.09004 * 109.49897 * 54.43870 * 4 2 1 6 6 N 1.46496 * 109.49839 * 294.37504 * 4 2 1 7 7 C 1.34783 * 120.00371 * 154.99677 * 6 4 2 8 8 O 1.21556 * 119.99470 * 0.02562 * 7 6 4 9 9 C 1.47831 * 120.00054 * 179.97438 * 7 6 4 10 10 C 1.39952 * 120.93592 * 180.02562 * 9 7 6 11 11 N 1.32144 * 118.92104 * 179.97438 * 10 9 7 12 12 C 1.31866 * 120.96827 * 359.97438 * 11 10 9 13 13 C 1.50699 * 118.95218 * 180.02562 * 12 11 10 14 14 C 1.53004 * 117.50144 * 171.25559 * 13 12 11 15 15 C 1.52996 * 117.50212 * 239.91416 * 13 12 11 16 16 N 1.31872 * 122.09816 * 0.27863 * 12 11 10 17 17 C 1.32143 * 120.96170 * 359.44141 * 16 12 11 18 18 C 1.53034 * 109.31485 * 174.42085 * 4 2 1 19 19 C 1.53040 * 109.53915 * 298.63765 * 18 4 2 20 20 C 1.53188 * 109.31537 * 61.36096 * 19 18 4 21 21 N 1.46922 * 108.77589 * 305.37051 * 20 19 18 22 22 C 1.36940 * 120.62985 * 233.63008 * 21 20 19 23 23 H 1.07996 * 120.00066 * 150.13932 * 22 21 20 24 24 C 1.38811 * 119.99672 * 330.14244 * 22 21 20 25 25 N 1.31621 * 120.00276 * 344.49662 * 24 22 21 26 26 Si 1.86803 * 119.99856 * 164.49863 * 24 22 21 27 27 H 1.48494 * 109.47271 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47087 * 120.00078 * 26 24 22 29 29 H 1.48500 * 109.47051 * 239.99939 * 26 24 22 30 30 H 1.08997 * 109.47081 * 299.64440 * 1 2 3 31 31 H 1.08997 * 109.46936 * 59.64630 * 1 2 3 32 32 H 1.09000 * 109.47029 * 179.64570 * 1 2 3 33 33 H 0.97002 * 120.00148 * 334.99705 * 6 4 2 34 34 H 1.07996 * 120.53938 * 359.97438 * 10 9 7 35 35 H 1.08998 * 115.54960 * 25.58624 * 13 12 11 36 36 H 1.09004 * 117.50032 * 215.00866 * 14 13 12 37 37 H 1.09001 * 117.49484 * 0.02562 * 14 13 12 38 38 H 1.09002 * 117.49883 * 359.97438 * 15 13 12 39 39 H 1.09002 * 117.50398 * 144.97650 * 15 13 12 40 40 H 1.08003 * 120.53842 * 180.29255 * 17 16 12 41 41 H 1.09001 * 109.45909 * 58.65586 * 18 4 2 42 42 H 1.09001 * 109.46046 * 178.61315 * 18 4 2 43 43 H 1.09005 * 109.49568 * 301.40708 * 19 18 4 44 44 H 1.09004 * 109.52617 * 181.33505 * 19 18 4 45 45 H 1.08996 * 109.58965 * 185.57975 * 20 19 18 46 46 H 1.09004 * 109.58494 * 65.15436 * 20 19 18 47 47 H 0.97000 * 119.99826 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.6025 -1.7251 1.2917 6 7 1.6705 0.0267 2.4435 7 6 1.5470 -0.6049 3.6278 8 8 1.7457 -1.8018 3.7018 9 6 1.1711 0.1582 4.8368 10 6 1.0380 -0.4776 6.0764 11 7 0.7007 0.2432 7.1314 12 6 0.4915 1.5410 7.0277 13 6 0.1095 2.3191 8.2604 14 6 0.0747 3.8448 8.1504 15 6 -1.2324 3.0539 8.2445 16 7 0.6013 2.1789 5.8788 17 6 0.9398 1.5370 4.7744 18 6 3.5674 -0.8480 1.1702 19 6 3.9568 -1.6658 -0.0634 20 6 3.4650 -0.9471 -1.3236 21 7 2.0226 -0.6996 -1.1944 22 6 1.1536 -1.1135 -2.1685 23 1 0.1398 -1.3809 -1.9096 24 6 1.5760 -1.1895 -3.4886 25 7 2.6865 -0.5884 -3.8600 26 14 0.5682 -2.1448 -4.7382 27 1 -0.6264 -2.7234 -4.0724 28 1 0.1355 -1.2322 -5.8269 29 1 1.3949 -3.2387 -5.3085 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 1.5123 0.9819 2.3845 34 1 1.2080 -1.5400 6.1693 35 1 0.4371 1.8902 9.2074 36 1 0.3796 4.4196 9.0249 37 1 0.3278 4.2857 7.1862 38 1 -1.8388 2.9749 7.3421 39 1 -1.7878 3.1081 9.1808 40 1 1.0323 2.0671 3.8380 41 1 4.0060 0.1473 1.0994 42 1 3.9376 -1.3449 2.0670 43 1 3.4982 -2.6529 -0.0051 44 1 5.0411 -1.7702 -0.1038 45 1 3.6518 -1.5718 -2.1970 46 1 3.9903 0.0019 -1.4316 47 1 2.9813 -0.6412 -4.7826 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993939412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:48 Heat of formation + Delta-G solvation = 59.080233 kcal Electronic energy + Delta-G solvation = -28082.496379 eV Core-core repulsion = 24266.779270 eV Total energy + Delta-G solvation = -3815.717109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.59886 -39.71862 -37.80334 -37.25435 -34.66437 -34.00186 -32.81178 -32.22013 -31.55882 -29.26220 -26.64210 -25.80099 -25.03596 -24.87235 -22.73457 -22.66895 -21.66826 -20.78298 -20.50777 -19.57989 -18.14654 -17.95528 -16.97768 -16.44644 -15.77058 -15.61411 -15.30393 -14.96808 -14.62316 -14.55982 -14.32634 -13.89999 -13.80678 -13.66633 -13.38657 -12.87339 -12.65845 -12.58132 -11.96934 -11.79966 -11.77292 -11.60012 -11.30442 -11.20725 -11.16740 -10.97253 -10.88349 -10.80412 -10.62222 -10.37099 -10.21435 -10.07164 -10.05273 -9.72745 -9.66374 -9.60470 -9.43218 -8.80752 -8.50714 -6.72125 -5.84242 -3.29248 0.11814 0.70993 2.66542 3.06847 3.28580 3.34064 3.34662 3.42814 3.44531 3.61270 3.82409 4.14354 4.42165 4.45351 4.48136 4.59573 4.62979 4.72355 4.95327 5.23470 5.26944 5.32119 5.41457 5.42570 5.45154 5.52730 5.68798 5.71521 5.82284 5.88712 5.93797 5.99837 6.14139 6.25565 6.33196 6.45479 6.52063 6.54027 6.62924 6.69355 6.77590 6.91848 6.99293 7.34549 7.51495 7.61808 7.67752 7.77934 8.17087 8.40113 9.15280 9.77648 10.33902 11.24476 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.002442 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.142329 B =11464.428952 C =11890.000715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 H 0.028 0.972 4 C 0.130 3.870 5 H 0.089 0.911 6 N -0.709 5.709 7 C 0.566 3.434 8 O -0.531 6.531 9 C -0.243 4.243 10 C 0.211 3.789 11 N -0.517 5.517 12 C 0.364 3.636 13 C -0.108 4.108 14 C -0.152 4.152 15 C -0.153 4.153 16 N -0.519 5.519 17 C 0.187 3.813 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.581 5.581 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.289 1.289 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.394 0.606 34 H 0.183 0.817 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.174 0.826 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.020 0.980 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 7.375 21.110 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.107 0.893 6 N -0.359 5.359 7 C 0.350 3.650 8 O -0.409 6.409 9 C -0.250 4.250 10 C 0.044 3.956 11 N -0.230 5.230 12 C 0.098 3.902 13 C -0.128 4.128 14 C -0.189 4.189 15 C -0.191 4.191 16 N -0.232 5.232 17 C 0.020 3.980 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.304 5.304 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.229 0.771 34 H 0.200 0.800 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.191 0.809 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.038 0.962 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.293 7.015 21.754 23.093 hybrid contribution -0.138 -0.560 -1.579 1.682 sum -3.431 6.454 20.174 21.458 Atomic orbital electron populations 1.21825 0.95599 1.01817 1.00230 1.20564 0.93269 0.93582 0.86633 0.95410 1.21901 0.95330 0.96933 0.83332 0.89254 1.46066 1.69405 1.12130 1.08318 1.17718 0.77726 0.86957 0.82600 1.90800 1.50473 1.14190 1.85405 1.21916 1.08726 0.96765 0.97611 1.23521 0.85375 1.00965 0.85774 1.68278 1.14439 1.07546 1.32747 1.22384 0.88540 0.87184 0.92064 1.20705 1.03916 0.93883 0.94314 1.23068 1.00211 0.91089 1.04580 1.23016 0.89991 1.02203 1.03938 1.68138 1.15399 1.40605 0.99068 1.23484 0.87203 0.90304 0.97035 1.21766 0.95126 1.00190 0.98491 1.22186 0.99326 0.99721 0.96767 1.20838 0.83082 0.97224 0.94466 1.44034 1.03165 1.65046 1.18201 1.19190 0.95217 1.37861 0.85978 0.91157 1.25095 0.97877 0.99413 0.97002 1.70034 1.24091 1.43658 1.16709 0.86243 0.79651 0.79589 0.81402 1.20204 1.21718 1.21530 0.94415 0.91636 0.92569 0.77109 0.80001 0.85074 0.87999 0.87008 0.88408 0.87731 0.80941 0.92671 0.93109 0.92441 0.92907 0.89421 0.96208 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.84 37.16 0.29 -2.13 16 2 C 0.17 3.19 3.03 -67.60 -0.21 2.99 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.22 1.99 -67.81 -0.14 2.08 16 5 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 6 N -0.71 -9.50 4.53 -54.64 -0.25 -9.74 16 7 C 0.57 7.96 7.75 -12.33 -0.10 7.86 16 8 O -0.53 -9.34 16.11 5.32 0.09 -9.25 16 9 C -0.24 -2.82 5.91 -104.69 -0.62 -3.44 16 10 C 0.21 2.45 10.88 -16.78 -0.18 2.27 16 11 N -0.52 -6.08 10.31 -10.39 -0.11 -6.19 16 12 C 0.36 3.96 7.31 -157.07 -1.15 2.82 16 13 C -0.11 -0.89 6.23 -91.77 -0.57 -1.46 16 14 C -0.15 -1.00 10.01 -26.69 -0.27 -1.27 16 15 C -0.15 -1.02 10.24 -26.70 -0.27 -1.29 16 16 N -0.52 -5.56 9.32 -10.40 -0.10 -5.65 16 17 C 0.19 1.87 10.81 -16.78 -0.18 1.69 16 18 C -0.12 -2.00 5.46 -26.69 -0.15 -2.15 16 19 C -0.14 -2.66 6.08 -26.61 -0.16 -2.83 16 20 C 0.17 3.88 5.28 -3.72 -0.02 3.86 16 21 N -0.58 -13.67 2.99 -164.78 -0.49 -14.16 16 22 C -0.25 -6.55 8.58 -15.06 -0.13 -6.68 16 23 H 0.07 1.79 6.23 -52.49 -0.33 1.47 16 24 C 0.01 0.14 4.94 -17.43 -0.09 0.05 16 25 N -0.90 -25.27 11.23 55.49 0.62 -24.64 16 26 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.04 0.54 7.78 -51.93 -0.40 0.13 16 31 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 32 H 0.06 1.05 7.40 -51.93 -0.38 0.67 16 33 H 0.39 4.15 6.74 -40.82 -0.28 3.88 16 34 H 0.18 1.93 7.74 -52.49 -0.41 1.52 16 35 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.11 0.85 7.53 -51.93 -0.39 0.46 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.17 1.24 6.54 -52.48 -0.34 0.90 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.09 2.26 6.15 -51.93 -0.32 1.94 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -30.85 378.82 -10.49 -41.34 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.00 Total: 4.08 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.93 Total: 2.37 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.32 Total: -60.39 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.85 -10.49 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993939412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.419 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds