Wall clock time and date at job start Tue Mar 31 2020 17:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70190 * 2 1 4 4 C 1.53194 * 109.58540 * 120.35488 * 2 1 3 5 5 H 1.09004 * 109.49897 * 54.43870 * 4 2 1 6 6 N 1.46496 * 109.49839 * 294.37504 * 4 2 1 7 7 C 1.34783 * 120.00371 * 154.99677 * 6 4 2 8 8 O 1.21556 * 119.99470 * 0.02562 * 7 6 4 9 9 C 1.47831 * 120.00054 * 179.97438 * 7 6 4 10 10 C 1.39952 * 120.93592 * 180.02562 * 9 7 6 11 11 N 1.32144 * 118.92104 * 179.97438 * 10 9 7 12 12 C 1.31866 * 120.96827 * 359.97438 * 11 10 9 13 13 C 1.50699 * 118.95218 * 180.02562 * 12 11 10 14 14 C 1.53004 * 117.50144 * 171.25559 * 13 12 11 15 15 C 1.52996 * 117.50212 * 239.91416 * 13 12 11 16 16 N 1.31872 * 122.09816 * 0.27863 * 12 11 10 17 17 C 1.32143 * 120.96170 * 359.44141 * 16 12 11 18 18 C 1.53034 * 109.31485 * 174.42085 * 4 2 1 19 19 C 1.53040 * 109.53915 * 298.63765 * 18 4 2 20 20 C 1.53188 * 109.31537 * 61.36096 * 19 18 4 21 21 N 1.46922 * 108.77589 * 305.37051 * 20 19 18 22 22 C 1.36940 * 120.62985 * 233.63008 * 21 20 19 23 23 H 1.07996 * 120.00066 * 150.13932 * 22 21 20 24 24 C 1.38811 * 119.99672 * 330.14244 * 22 21 20 25 25 N 1.31621 * 120.00276 * 344.49662 * 24 22 21 26 26 Si 1.86803 * 119.99856 * 164.49863 * 24 22 21 27 27 H 1.48494 * 109.47271 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47087 * 120.00078 * 26 24 22 29 29 H 1.48500 * 109.47051 * 239.99939 * 26 24 22 30 30 H 1.08997 * 109.47081 * 299.64440 * 1 2 3 31 31 H 1.08997 * 109.46936 * 59.64630 * 1 2 3 32 32 H 1.09000 * 109.47029 * 179.64570 * 1 2 3 33 33 H 0.97002 * 120.00148 * 334.99705 * 6 4 2 34 34 H 1.07996 * 120.53938 * 359.97438 * 10 9 7 35 35 H 1.08998 * 115.54960 * 25.58624 * 13 12 11 36 36 H 1.09004 * 117.50032 * 215.00866 * 14 13 12 37 37 H 1.09001 * 117.49484 * 0.02562 * 14 13 12 38 38 H 1.09002 * 117.49883 * 359.97438 * 15 13 12 39 39 H 1.09002 * 117.50398 * 144.97650 * 15 13 12 40 40 H 1.08003 * 120.53842 * 180.29255 * 17 16 12 41 41 H 1.09001 * 109.45909 * 58.65586 * 18 4 2 42 42 H 1.09001 * 109.46046 * 178.61315 * 18 4 2 43 43 H 1.09005 * 109.49568 * 301.40708 * 19 18 4 44 44 H 1.09004 * 109.52617 * 181.33505 * 19 18 4 45 45 H 1.08996 * 109.58965 * 185.57975 * 20 19 18 46 46 H 1.09004 * 109.58494 * 65.15436 * 20 19 18 47 47 H 0.97000 * 119.99826 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.6025 -1.7251 1.2917 6 7 1.6705 0.0267 2.4435 7 6 1.5470 -0.6049 3.6278 8 8 1.7457 -1.8018 3.7018 9 6 1.1711 0.1582 4.8368 10 6 1.0380 -0.4776 6.0764 11 7 0.7007 0.2432 7.1314 12 6 0.4915 1.5410 7.0277 13 6 0.1095 2.3191 8.2604 14 6 0.0747 3.8448 8.1504 15 6 -1.2324 3.0539 8.2445 16 7 0.6013 2.1789 5.8788 17 6 0.9398 1.5370 4.7744 18 6 3.5674 -0.8480 1.1702 19 6 3.9568 -1.6658 -0.0634 20 6 3.4650 -0.9471 -1.3236 21 7 2.0226 -0.6996 -1.1944 22 6 1.1536 -1.1135 -2.1685 23 1 0.1398 -1.3809 -1.9096 24 6 1.5760 -1.1895 -3.4886 25 7 2.6865 -0.5884 -3.8600 26 14 0.5682 -2.1448 -4.7382 27 1 -0.6264 -2.7234 -4.0724 28 1 0.1355 -1.2322 -5.8269 29 1 1.3949 -3.2387 -5.3085 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 1.5123 0.9819 2.3845 34 1 1.2080 -1.5400 6.1693 35 1 0.4371 1.8902 9.2074 36 1 0.3796 4.4196 9.0249 37 1 0.3278 4.2857 7.1862 38 1 -1.8388 2.9749 7.3421 39 1 -1.7878 3.1081 9.1808 40 1 1.0323 2.0671 3.8380 41 1 4.0060 0.1473 1.0994 42 1 3.9376 -1.3449 2.0670 43 1 3.4982 -2.6529 -0.0051 44 1 5.0411 -1.7702 -0.1038 45 1 3.6518 -1.5718 -2.1970 46 1 3.9903 0.0019 -1.4316 47 1 2.9813 -0.6412 -4.7826 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993939412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:47 Heat of formation + Delta-G solvation = 40.928097 kcal Electronic energy + Delta-G solvation = -28083.283515 eV Core-core repulsion = 24266.779270 eV Total energy + Delta-G solvation = -3816.504245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46044 -40.93673 -39.23528 -37.92956 -36.04792 -35.00648 -34.30507 -33.53469 -32.96896 -30.85411 -28.03353 -27.05916 -26.62786 -25.72919 -24.05173 -23.22612 -22.63907 -22.34459 -21.62631 -21.13807 -19.16564 -18.89527 -18.22421 -17.79537 -17.22764 -16.62907 -16.54259 -16.03318 -15.83413 -15.64956 -15.57013 -15.35694 -15.05956 -14.94686 -14.57337 -14.50306 -14.28154 -13.35898 -13.33931 -13.23809 -12.83745 -12.73108 -12.70445 -12.51674 -12.37747 -12.34044 -12.06784 -12.00462 -11.92042 -11.81383 -11.77001 -11.63374 -11.41035 -11.22788 -10.99956 -10.53594 -10.49139 -10.43316 -10.05861 -8.64169 -7.85568 -5.31557 -0.74982 -0.11641 1.45637 1.49246 1.57808 1.66363 1.92427 2.49900 2.53043 2.62148 2.84358 3.14265 3.30431 3.31466 3.52563 3.65619 3.78044 3.87183 3.92692 3.94761 4.04277 4.09126 4.21455 4.32123 4.37677 4.51457 4.62349 4.63477 4.77498 4.80954 4.88684 4.92332 4.93415 5.04677 5.09929 5.14114 5.18311 5.20017 5.27646 5.33040 5.44301 5.47743 5.58781 5.71328 5.72036 5.77488 6.41467 6.43555 6.84876 7.07891 7.17544 7.87308 8.38477 9.21479 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.002442 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.142329 B =11464.428952 C =11890.000715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.164 3.836 3 H 0.038 0.962 4 C 0.147 3.853 5 H 0.063 0.937 6 N -0.697 5.697 7 C 0.573 3.427 8 O -0.569 6.569 9 C -0.251 4.251 10 C 0.207 3.793 11 N -0.532 5.532 12 C 0.359 3.641 13 C -0.128 4.128 14 C -0.142 4.142 15 C -0.145 4.145 16 N -0.525 5.525 17 C 0.198 3.802 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.175 3.825 21 N -0.600 5.600 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.048 4.048 25 N -0.932 5.932 26 Si 0.958 3.042 27 H -0.268 1.268 28 H -0.292 1.292 29 H -0.294 1.294 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.412 0.588 34 H 0.185 0.815 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.203 0.797 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.006 0.994 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 8.861 23.241 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.055 0.945 4 C 0.041 3.959 5 H 0.081 0.919 6 N -0.348 5.348 7 C 0.359 3.641 8 O -0.449 6.449 9 C -0.259 4.259 10 C 0.040 3.960 11 N -0.245 5.245 12 C 0.094 3.906 13 C -0.148 4.148 14 C -0.179 4.179 15 C -0.183 4.183 16 N -0.238 5.238 17 C 0.030 3.970 18 C -0.149 4.149 19 C -0.169 4.169 20 C 0.050 3.950 21 N -0.324 5.324 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.244 4.244 25 N -0.578 5.578 26 Si 0.787 3.213 27 H -0.193 1.193 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.249 0.751 34 H 0.202 0.798 35 H 0.158 0.842 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.144 0.856 40 H 0.220 0.780 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.024 0.976 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.157 8.534 23.926 25.740 hybrid contribution 0.096 -0.970 -2.132 2.344 sum -4.060 7.565 21.793 23.424 Atomic orbital electron populations 1.21749 0.94460 1.01125 1.01369 1.20733 0.94254 0.93646 0.85612 0.94457 1.21385 0.95051 0.95696 0.83761 0.91904 1.45770 1.69198 1.12774 1.07091 1.17936 0.76634 0.86479 0.83034 1.90789 1.52160 1.16002 1.85960 1.21619 1.10581 0.97315 0.96342 1.23644 0.85014 1.01314 0.86001 1.68349 1.15337 1.08116 1.32742 1.22972 0.87390 0.87166 0.93063 1.20898 1.05507 0.94749 0.93604 1.23133 0.99811 0.89949 1.05017 1.23095 0.89594 1.01103 1.04526 1.68267 1.15893 1.40443 0.99220 1.23936 0.85437 0.89630 0.97973 1.21694 0.95156 1.00532 0.97484 1.22021 1.00346 0.98797 0.95786 1.20632 0.83200 0.96164 0.95011 1.44266 1.03122 1.65887 1.19101 1.19448 0.95475 1.36608 0.86542 0.91048 1.25749 0.99073 1.00807 0.98729 1.70164 1.25677 1.45413 1.16588 0.85340 0.78525 0.78110 0.79285 1.19293 1.21953 1.22089 0.90570 0.93200 0.94101 0.75051 0.79791 0.84235 0.85868 0.87985 0.89431 0.85648 0.78026 0.91324 0.92457 0.93658 0.90955 0.92916 0.97636 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.84 71.98 0.56 -3.82 16 2 C 0.16 6.07 3.03 44.97 0.14 6.20 16 3 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.15 4.82 1.99 45.07 0.09 4.91 16 5 H 0.06 2.45 7.58 -2.38 -0.02 2.43 16 6 N -0.70 -17.01 4.53 -445.05 -2.02 -19.03 16 7 C 0.57 15.17 7.75 86.78 0.67 15.84 16 8 O -0.57 -19.62 16.11 -3.89 -0.06 -19.68 16 9 C -0.25 -5.38 5.91 -19.91 -0.12 -5.49 16 10 C 0.21 4.60 10.88 85.06 0.93 5.53 16 11 N -0.53 -11.87 10.31 -186.80 -1.93 -13.80 16 12 C 0.36 7.20 7.31 138.70 1.01 8.21 16 13 C -0.13 -1.82 6.23 -11.54 -0.07 -1.90 16 14 C -0.14 -1.50 10.01 30.62 0.31 -1.19 16 15 C -0.15 -1.57 10.24 30.62 0.31 -1.26 16 16 N -0.52 -10.05 9.32 -186.80 -1.74 -11.79 16 17 C 0.20 3.43 10.81 85.06 0.92 4.35 16 18 C -0.11 -3.59 5.46 30.62 0.17 -3.42 16 19 C -0.13 -4.88 6.08 30.67 0.19 -4.70 16 20 C 0.18 8.17 5.28 86.36 0.46 8.63 16 21 N -0.60 -28.37 2.99 -675.25 -2.02 -30.38 16 22 C -0.25 -13.10 8.58 84.03 0.72 -12.38 16 23 H 0.07 3.66 6.23 -2.91 -0.02 3.64 16 24 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 25 N -0.93 -53.66 11.23 21.65 0.24 -53.41 16 26 Si 0.96 44.26 29.58 68.60 2.03 46.29 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 29 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 30 H 0.08 1.95 7.78 -2.39 -0.02 1.93 16 31 H 0.05 1.83 7.67 -2.39 -0.02 1.82 16 32 H 0.04 1.49 7.40 -2.39 -0.02 1.48 16 33 H 0.41 7.23 6.74 -92.71 -0.62 6.60 16 34 H 0.19 3.86 7.74 -2.91 -0.02 3.84 16 35 H 0.14 1.71 8.14 -2.39 -0.02 1.70 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 1.31 7.53 -2.39 -0.02 1.30 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.20 2.11 6.54 -2.91 -0.02 2.09 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.05 2.82 6.15 -2.39 -0.01 2.80 16 46 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 47 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -67.93 378.82 1.58 -66.35 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.37 Total: 18.14 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.70 Total: 17.31 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -7.46 Total: -128.41 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.06 Total: -19.68 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.93 1.58 -66.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993939412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.283 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds