Wall clock time and date at job start Tue Mar 31 2020 17:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.58549 * 2 1 4 4 C 1.53192 * 109.70360 * 239.64222 * 2 1 3 5 5 H 1.09004 * 109.49872 * 65.55926 * 4 2 1 6 6 N 1.46496 * 109.49658 * 305.49071 * 4 2 1 7 7 C 1.34778 * 119.99862 * 155.00275 * 6 4 2 8 8 O 1.21561 * 120.00069 * 359.97438 * 7 6 4 9 9 C 1.47829 * 119.99899 * 180.02562 * 7 6 4 10 10 C 1.39962 * 120.94008 * 354.03937 * 9 7 6 11 11 N 1.32136 * 118.92316 * 179.71573 * 10 9 7 12 12 C 1.31882 * 120.96889 * 0.58285 * 11 10 9 13 13 N 1.31855 * 122.09032 * 359.69148 * 12 11 10 14 14 C 1.32165 * 120.97326 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.54224 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.49507 * 358.83259 * 15 14 13 17 17 C 1.52992 * 117.49761 * 290.21024 * 15 14 13 18 18 C 1.53039 * 109.31161 * 185.50440 * 4 2 1 19 19 C 1.53038 * 109.53685 * 61.36558 * 18 4 2 20 20 C 1.53618 * 109.24430 * 298.50921 * 19 18 4 21 21 N 1.46921 * 109.58826 * 120.27936 * 2 1 3 22 22 C 1.36936 * 120.63013 * 353.51579 * 21 2 1 23 23 H 1.08000 * 120.00126 * 30.11910 * 22 21 2 24 24 C 1.38819 * 119.99983 * 210.11331 * 22 21 2 25 25 N 1.31618 * 119.99690 * 23.09462 * 24 22 21 26 26 Si 1.86802 * 119.99712 * 203.09368 * 24 22 21 27 27 H 1.48499 * 109.46871 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.46991 * 299.99799 * 26 24 22 29 29 H 1.48494 * 109.47210 * 60.00366 * 26 24 22 30 30 H 1.09007 * 109.47397 * 299.72077 * 1 2 3 31 31 H 1.09000 * 109.47443 * 59.71776 * 1 2 3 32 32 H 1.08998 * 109.47410 * 179.72093 * 1 2 3 33 33 H 0.96999 * 120.00194 * 334.99636 * 6 4 2 34 34 H 1.08002 * 120.53971 * 359.97438 * 10 9 7 35 35 H 1.07993 * 118.95728 * 179.67491 * 12 11 10 36 36 H 1.08997 * 115.54708 * 144.53192 * 15 14 13 37 37 H 1.08999 * 117.50319 * 359.97438 * 16 15 14 38 38 H 1.08998 * 117.49847 * 145.01912 * 16 15 14 39 39 H 1.09004 * 117.49865 * 214.97323 * 17 15 14 40 40 H 1.09006 * 117.50460 * 359.97438 * 17 15 14 41 41 H 1.09000 * 109.46155 * 181.38948 * 18 4 2 42 42 H 1.09009 * 109.46428 * 301.36023 * 18 4 2 43 43 H 1.09003 * 109.49910 * 58.58411 * 19 18 4 44 44 H 1.09000 * 109.49872 * 178.65056 * 19 18 4 45 45 H 1.09002 * 109.74005 * 295.11712 * 20 19 18 46 46 H 1.08998 * 109.66931 * 174.54682 * 20 19 18 47 47 H 0.96998 * 120.00051 * 5.38078 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2445 5 1 1.7689 -0.1673 -2.1365 6 7 1.4565 -2.0684 -1.3067 7 6 1.3362 -2.6973 -2.4926 8 8 1.7169 -2.1530 -3.5107 9 6 0.7404 -4.0488 -2.5554 10 6 0.4085 -4.7439 -1.3868 11 7 -0.1274 -5.9473 -1.4895 12 6 -0.3391 -6.4975 -2.6692 13 7 -0.0364 -5.8805 -3.7944 14 6 0.4982 -4.6718 -3.7848 15 6 0.8399 -3.9752 -5.0767 16 6 0.5697 -4.7306 -6.3794 17 6 2.0070 -4.5338 -5.8932 18 6 3.5705 -0.8443 -1.1674 19 6 3.9602 -1.6606 0.0671 20 6 3.4660 -0.9374 1.3290 21 7 2.0225 -0.6979 1.1953 22 6 1.1534 -1.1123 2.1690 23 1 0.1415 -1.3858 1.9089 24 6 1.5731 -1.1811 3.4905 25 7 2.5929 -0.4544 3.8957 26 14 0.6903 -2.3050 4.6934 27 1 1.3267 -2.1961 6.0307 28 1 -0.7361 -1.9036 4.7904 29 1 0.7784 -3.7083 4.2156 30 1 -0.3634 0.5095 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0276 -0.0050 33 1 1.1525 -2.5026 -0.4943 34 1 0.5836 -4.3021 -0.4170 35 1 -0.7741 -7.4849 -2.7152 36 1 0.6938 -2.8951 -5.0812 37 1 0.1452 -5.7315 -6.3021 38 1 0.2457 -4.1475 -7.2414 39 1 2.6285 -3.8212 -6.4354 40 1 2.5280 -5.4049 -5.4958 41 1 3.9430 -1.3407 -2.0635 42 1 4.0071 0.1520 -1.0962 43 1 3.5037 -2.6487 0.0088 44 1 5.0446 -1.7627 0.1083 45 1 3.9861 0.0147 1.4352 46 1 3.6538 -1.5583 2.2050 47 1 3.0016 0.1864 3.2931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994334654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:51 Heat of formation + Delta-G solvation = 60.180397 kcal Electronic energy + Delta-G solvation = -29543.327738 eV Core-core repulsion = 25727.658336 eV Total energy + Delta-G solvation = -3815.669403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47231 -39.66867 -37.87311 -37.22961 -34.32340 -33.59189 -32.79959 -32.28904 -31.54478 -29.28513 -26.53200 -25.45951 -25.34244 -24.90891 -22.47690 -22.12550 -21.46924 -21.11109 -20.72703 -18.94722 -17.88564 -17.75515 -17.14623 -16.91598 -15.72327 -15.43029 -15.16436 -14.70952 -14.60127 -14.45735 -14.19136 -14.03143 -13.69331 -13.61900 -13.33704 -13.13628 -12.72739 -12.16327 -11.93907 -11.75214 -11.64312 -11.55797 -11.45853 -11.33264 -11.09265 -10.89607 -10.72229 -10.62775 -10.40618 -10.31754 -10.13806 -10.12067 -9.86733 -9.61992 -9.50377 -9.43897 -9.20994 -8.71607 -8.45548 -6.97191 -6.12841 -3.36208 0.32224 0.82596 2.89569 3.28650 3.43704 3.46275 3.52053 3.63764 3.73855 3.88257 3.92038 4.20019 4.49192 4.63178 4.76453 4.90767 4.94550 5.01511 5.06615 5.17795 5.25363 5.38635 5.47754 5.54169 5.55398 5.62033 5.74813 5.75061 5.93499 6.02882 6.06022 6.07733 6.10582 6.16929 6.25906 6.32110 6.41061 6.46629 6.55816 6.71868 6.74279 6.81424 6.89631 7.00972 7.12723 7.73892 7.84693 7.91802 8.34427 8.49554 9.00926 9.74980 10.19203 11.13944 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.004041 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.990547 B = 6927.797913 C = 8071.315463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.160 3.840 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.080 0.920 6 N -0.692 5.692 7 C 0.563 3.437 8 O -0.536 6.536 9 C -0.233 4.233 10 C 0.187 3.813 11 N -0.524 5.524 12 C 0.313 3.687 13 N -0.526 5.526 14 C 0.261 3.739 15 C -0.115 4.115 16 C -0.165 4.165 17 C -0.147 4.147 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.151 3.849 21 N -0.594 5.594 22 C -0.355 4.355 23 H 0.062 0.938 24 C -0.019 4.019 25 N -0.914 5.914 26 Si 1.061 2.939 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.407 0.593 34 H 0.176 0.824 35 H 0.200 0.800 36 H 0.147 0.853 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.018 0.982 46 H 0.079 0.921 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 -7.205 -15.131 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.056 0.944 4 C 0.030 3.970 5 H 0.098 0.902 6 N -0.343 5.343 7 C 0.348 3.652 8 O -0.415 6.415 9 C -0.241 4.241 10 C 0.021 3.979 11 N -0.238 5.238 12 C 0.026 3.974 13 N -0.240 5.240 14 C 0.114 3.886 15 C -0.134 4.134 16 C -0.203 4.203 17 C -0.185 4.185 18 C -0.160 4.160 19 C -0.174 4.174 20 C 0.025 3.975 21 N -0.319 5.319 22 C -0.484 4.484 23 H 0.079 0.921 24 C -0.222 4.222 25 N -0.553 5.553 26 Si 0.891 3.109 27 H -0.212 1.212 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.193 0.807 35 H 0.217 0.783 36 H 0.165 0.835 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.036 0.964 46 H 0.097 0.903 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.945 -8.288 -14.251 16.747 hybrid contribution 0.211 1.170 -0.896 1.489 sum -2.734 -7.118 -15.147 16.958 Atomic orbital electron populations 1.21751 0.95335 1.01437 1.00508 1.20726 0.93629 0.93707 0.86688 0.94371 1.21575 0.92899 0.82531 1.00038 0.90203 1.45931 1.61103 1.18658 1.08633 1.17720 0.78988 0.84224 0.84273 1.90696 1.50142 1.66895 1.33807 1.21672 1.07658 0.98848 0.95896 1.23653 0.86739 0.89025 0.98509 1.68468 1.14625 1.11734 1.28952 1.25188 0.90450 0.99244 0.82552 1.68239 1.14065 1.09298 1.32364 1.20963 0.85974 0.88218 0.93421 1.21249 1.05322 1.00022 0.86786 1.23022 0.98644 1.02430 0.96167 1.22850 0.91198 1.02510 1.01990 1.21775 0.95389 1.00541 0.98264 1.22095 0.99122 0.99504 0.96709 1.21069 0.84132 0.96804 0.95498 1.44264 1.02523 1.65403 1.19665 1.19917 0.96516 1.43853 0.88119 0.92081 1.25844 0.99973 1.00476 0.95886 1.70779 1.25338 1.21255 1.37953 0.83567 0.75080 0.75850 0.76397 1.21157 1.21983 1.21902 0.91674 0.94200 0.92876 0.75508 0.80701 0.78333 0.83533 0.87594 0.88472 0.87985 0.89149 0.92733 0.91753 0.92615 0.93182 0.96431 0.90290 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 7.74 37.16 0.29 -2.03 16 2 C 0.16 2.96 3.19 -67.60 -0.22 2.75 16 3 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 4 C 0.14 2.23 2.33 -67.81 -0.16 2.07 16 5 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16 6 N -0.69 -10.81 3.42 -54.64 -0.19 -10.99 16 7 C 0.56 8.70 7.72 -12.34 -0.10 8.60 16 8 O -0.54 -9.08 13.24 5.31 0.07 -9.01 16 9 C -0.23 -3.30 5.91 -104.69 -0.62 -3.91 16 10 C 0.19 2.52 10.80 -16.78 -0.18 2.34 16 11 N -0.52 -6.90 10.42 -14.25 -0.15 -7.05 16 12 C 0.31 3.58 12.27 -92.03 -1.13 2.45 16 13 N -0.53 -6.63 9.44 -10.48 -0.10 -6.72 16 14 C 0.26 3.54 6.53 -81.81 -0.53 3.01 16 15 C -0.12 -1.44 4.72 -91.78 -0.43 -1.88 16 16 C -0.17 -1.67 10.04 -26.73 -0.27 -1.94 16 17 C -0.15 -1.60 10.23 -26.74 -0.27 -1.88 16 18 C -0.12 -1.98 5.58 -26.69 -0.15 -2.13 16 19 C -0.13 -2.38 5.94 -26.39 -0.16 -2.54 16 20 C 0.15 3.20 4.70 -3.49 -0.02 3.18 16 21 N -0.59 -12.87 2.48 -164.51 -0.41 -13.28 16 22 C -0.36 -8.63 8.47 -15.06 -0.13 -8.76 16 23 H 0.06 1.47 6.30 -52.49 -0.33 1.13 16 24 C -0.02 -0.49 4.72 -17.43 -0.08 -0.57 16 25 N -0.91 -25.66 12.47 55.49 0.69 -24.97 16 26 Si 1.06 23.61 29.98 -169.99 -5.10 18.52 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.92 6.40 -51.93 -0.33 0.59 16 33 H 0.41 6.53 5.95 -40.82 -0.24 6.29 16 34 H 0.18 2.22 6.58 -52.49 -0.35 1.87 16 35 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.15 2.02 6.21 -51.93 -0.32 1.70 16 37 H 0.11 1.09 7.58 -51.93 -0.39 0.69 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 43 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.02 0.39 7.82 -51.93 -0.41 -0.02 16 46 H 0.08 1.91 6.40 -51.93 -0.33 1.58 16 47 H 0.27 7.64 6.61 -40.82 -0.27 7.37 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -28.38 369.48 -10.52 -38.89 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.76 Total: 10.27 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -4.15 Total: -1.22 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.15 Total: -63.01 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.10 Total: 18.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.38 -10.52 -38.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994334654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.075 kcal (2) G-P(sol) polarization free energy of solvation -28.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds