Wall clock time and date at job start Tue Mar 31 2020 17:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.58549 * 2 1 4 4 C 1.53192 * 109.70360 * 239.64222 * 2 1 3 5 5 H 1.09004 * 109.49872 * 65.55926 * 4 2 1 6 6 N 1.46496 * 109.49658 * 305.49071 * 4 2 1 7 7 C 1.34778 * 119.99862 * 155.00275 * 6 4 2 8 8 O 1.21561 * 120.00069 * 359.97438 * 7 6 4 9 9 C 1.47829 * 119.99899 * 180.02562 * 7 6 4 10 10 C 1.39962 * 120.94008 * 354.03937 * 9 7 6 11 11 N 1.32136 * 118.92316 * 179.71573 * 10 9 7 12 12 C 1.31882 * 120.96889 * 0.58285 * 11 10 9 13 13 N 1.31855 * 122.09032 * 359.69148 * 12 11 10 14 14 C 1.32165 * 120.97326 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.54224 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.49507 * 358.83259 * 15 14 13 17 17 C 1.52992 * 117.49761 * 290.21024 * 15 14 13 18 18 C 1.53039 * 109.31161 * 185.50440 * 4 2 1 19 19 C 1.53038 * 109.53685 * 61.36558 * 18 4 2 20 20 C 1.53618 * 109.24430 * 298.50921 * 19 18 4 21 21 N 1.46921 * 109.58826 * 120.27936 * 2 1 3 22 22 C 1.36936 * 120.63013 * 353.51579 * 21 2 1 23 23 H 1.08000 * 120.00126 * 30.11910 * 22 21 2 24 24 C 1.38819 * 119.99983 * 210.11331 * 22 21 2 25 25 N 1.31618 * 119.99690 * 23.09462 * 24 22 21 26 26 Si 1.86802 * 119.99712 * 203.09368 * 24 22 21 27 27 H 1.48499 * 109.46871 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.46991 * 299.99799 * 26 24 22 29 29 H 1.48494 * 109.47210 * 60.00366 * 26 24 22 30 30 H 1.09007 * 109.47397 * 299.72077 * 1 2 3 31 31 H 1.09000 * 109.47443 * 59.71776 * 1 2 3 32 32 H 1.08998 * 109.47410 * 179.72093 * 1 2 3 33 33 H 0.96999 * 120.00194 * 334.99636 * 6 4 2 34 34 H 1.08002 * 120.53971 * 359.97438 * 10 9 7 35 35 H 1.07993 * 118.95728 * 179.67491 * 12 11 10 36 36 H 1.08997 * 115.54708 * 144.53192 * 15 14 13 37 37 H 1.08999 * 117.50319 * 359.97438 * 16 15 14 38 38 H 1.08998 * 117.49847 * 145.01912 * 16 15 14 39 39 H 1.09004 * 117.49865 * 214.97323 * 17 15 14 40 40 H 1.09006 * 117.50460 * 359.97438 * 17 15 14 41 41 H 1.09000 * 109.46155 * 181.38948 * 18 4 2 42 42 H 1.09009 * 109.46428 * 301.36023 * 18 4 2 43 43 H 1.09003 * 109.49910 * 58.58411 * 19 18 4 44 44 H 1.09000 * 109.49872 * 178.65056 * 19 18 4 45 45 H 1.09002 * 109.74005 * 295.11712 * 20 19 18 46 46 H 1.08998 * 109.66931 * 174.54682 * 20 19 18 47 47 H 0.96998 * 120.00051 * 5.38078 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2445 5 1 1.7689 -0.1673 -2.1365 6 7 1.4565 -2.0684 -1.3067 7 6 1.3362 -2.6973 -2.4926 8 8 1.7169 -2.1530 -3.5107 9 6 0.7404 -4.0488 -2.5554 10 6 0.4085 -4.7439 -1.3868 11 7 -0.1274 -5.9473 -1.4895 12 6 -0.3391 -6.4975 -2.6692 13 7 -0.0364 -5.8805 -3.7944 14 6 0.4982 -4.6718 -3.7848 15 6 0.8399 -3.9752 -5.0767 16 6 0.5697 -4.7306 -6.3794 17 6 2.0070 -4.5338 -5.8932 18 6 3.5705 -0.8443 -1.1674 19 6 3.9602 -1.6606 0.0671 20 6 3.4660 -0.9374 1.3290 21 7 2.0225 -0.6979 1.1953 22 6 1.1534 -1.1123 2.1690 23 1 0.1415 -1.3858 1.9089 24 6 1.5731 -1.1811 3.4905 25 7 2.5929 -0.4544 3.8957 26 14 0.6903 -2.3050 4.6934 27 1 1.3267 -2.1961 6.0307 28 1 -0.7361 -1.9036 4.7904 29 1 0.7784 -3.7083 4.2156 30 1 -0.3634 0.5095 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0276 -0.0050 33 1 1.1525 -2.5026 -0.4943 34 1 0.5836 -4.3021 -0.4170 35 1 -0.7741 -7.4849 -2.7152 36 1 0.6938 -2.8951 -5.0812 37 1 0.1452 -5.7315 -6.3021 38 1 0.2457 -4.1475 -7.2414 39 1 2.6285 -3.8212 -6.4354 40 1 2.5280 -5.4049 -5.4958 41 1 3.9430 -1.3407 -2.0635 42 1 4.0071 0.1520 -1.0962 43 1 3.5037 -2.6487 0.0088 44 1 5.0446 -1.7627 0.1083 45 1 3.9861 0.0147 1.4352 46 1 3.6538 -1.5583 2.2050 47 1 3.0016 0.1864 3.2931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994334654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:50 Heat of formation + Delta-G solvation = 46.211565 kcal Electronic energy + Delta-G solvation = -29543.933472 eV Core-core repulsion = 25727.658336 eV Total energy + Delta-G solvation = -3816.275137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.48946 -40.97078 -39.25244 -38.18254 -35.87682 -34.66295 -34.12301 -33.66122 -32.95503 -30.87608 -28.01551 -26.85501 -26.39504 -26.29765 -23.74707 -23.23160 -22.68162 -22.31718 -22.10675 -20.40389 -19.01855 -18.99901 -18.67410 -17.95569 -16.96449 -16.65692 -16.24943 -16.13714 -15.98086 -15.74856 -15.49857 -15.39844 -15.07876 -14.85599 -14.74043 -14.49420 -14.21405 -13.49748 -13.23068 -13.08363 -12.79945 -12.77969 -12.72746 -12.52321 -12.49091 -12.35623 -12.25679 -11.92592 -11.83738 -11.72969 -11.55431 -11.51798 -11.33398 -10.95376 -10.72018 -10.55676 -10.42709 -10.39800 -9.98055 -8.84127 -8.11386 -5.32915 -0.68029 -0.17875 1.64038 1.69431 1.76147 1.86306 2.07049 2.55662 2.69833 2.80144 2.95517 3.00792 3.26300 3.31445 3.47382 3.58037 3.71759 3.92546 3.97969 3.99248 4.06582 4.10662 4.12258 4.26937 4.31028 4.46305 4.57116 4.61105 4.66695 4.75950 4.85946 4.88175 4.90689 4.94554 5.03141 5.09593 5.13550 5.20320 5.24389 5.30267 5.31772 5.38589 5.40243 5.58634 5.75025 5.99331 6.48843 6.50396 6.87316 7.10055 7.13598 7.85727 8.30986 9.12624 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.004041 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.990547 B = 6927.797913 C = 8071.315463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.157 3.843 3 H 0.033 0.967 4 C 0.146 3.854 5 H 0.088 0.912 6 N -0.692 5.692 7 C 0.568 3.432 8 O -0.551 6.551 9 C -0.249 4.249 10 C 0.189 3.811 11 N -0.538 5.538 12 C 0.318 3.682 13 N -0.529 5.529 14 C 0.257 3.743 15 C -0.136 4.136 16 C -0.146 4.146 17 C -0.144 4.144 18 C -0.115 4.115 19 C -0.122 4.122 20 C 0.158 3.842 21 N -0.603 5.603 22 C -0.338 4.338 23 H 0.067 0.933 24 C -0.073 4.073 25 N -0.951 5.951 26 Si 1.105 2.895 27 H -0.303 1.303 28 H -0.279 1.279 29 H -0.277 1.277 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.406 0.594 34 H 0.178 0.822 35 H 0.238 0.762 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.003 0.997 46 H 0.045 0.955 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -8.718 -17.180 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 H 0.051 0.949 4 C 0.040 3.960 5 H 0.106 0.894 6 N -0.342 5.342 7 C 0.354 3.646 8 O -0.431 6.431 9 C -0.256 4.256 10 C 0.022 3.978 11 N -0.252 5.252 12 C 0.032 3.968 13 N -0.243 5.243 14 C 0.111 3.889 15 C -0.155 4.155 16 C -0.183 4.183 17 C -0.183 4.183 18 C -0.153 4.153 19 C -0.161 4.161 20 C 0.032 3.968 21 N -0.329 5.329 22 C -0.467 4.467 23 H 0.084 0.916 24 C -0.270 4.270 25 N -0.593 5.593 26 Si 0.931 3.069 27 H -0.229 1.229 28 H -0.205 1.205 29 H -0.203 1.203 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.243 0.757 34 H 0.195 0.805 35 H 0.254 0.746 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.021 0.979 46 H 0.064 0.936 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.974 -9.812 -16.344 19.473 hybrid contribution 0.492 1.634 -0.355 1.743 sum -3.482 -8.178 -16.699 18.918 Atomic orbital electron populations 1.21667 0.94338 1.01548 1.00690 1.20858 0.94472 0.93405 0.86206 0.94946 1.21362 0.92913 0.82924 0.98828 0.89422 1.45861 1.61297 1.18308 1.08759 1.17841 0.78479 0.84560 0.83715 1.90691 1.50828 1.67427 1.34187 1.21546 1.09131 0.98420 0.96531 1.23713 0.86415 0.89244 0.98454 1.68539 1.15203 1.11617 1.29829 1.25981 0.88954 1.00171 0.81732 1.68336 1.14283 1.08939 1.32749 1.21183 0.85516 0.88582 0.93611 1.21207 1.07312 0.99466 0.87504 1.23084 0.97738 1.02201 0.95251 1.22905 0.91515 1.02371 1.01459 1.21723 0.95320 1.00688 0.97578 1.21930 0.99901 0.98940 0.95322 1.20885 0.84083 0.95810 0.95975 1.44417 1.02446 1.66006 1.20001 1.20158 0.96831 1.41401 0.88334 0.91551 1.26924 1.00479 1.01598 0.97983 1.70891 1.27479 1.22972 1.37967 0.82967 0.74687 0.75270 0.73968 1.22932 1.20517 1.20291 0.93777 0.91674 0.92771 0.75716 0.80499 0.74619 0.84976 0.87518 0.86667 0.87144 0.89448 0.92018 0.91120 0.92856 0.91704 0.97908 0.93639 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 7.74 71.98 0.56 -3.66 16 2 C 0.16 5.71 3.19 44.97 0.14 5.85 16 3 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 4 C 0.15 4.59 2.33 45.07 0.10 4.70 16 5 H 0.09 2.69 7.58 -2.38 -0.02 2.67 16 6 N -0.69 -20.72 3.42 -445.05 -1.52 -22.24 16 7 C 0.57 16.83 7.72 86.78 0.67 17.50 16 8 O -0.55 -17.95 13.24 -3.91 -0.05 -18.00 16 9 C -0.25 -6.72 5.91 -19.91 -0.12 -6.84 16 10 C 0.19 4.83 10.80 85.07 0.92 5.75 16 11 N -0.54 -13.11 10.42 -198.98 -2.07 -15.18 16 12 C 0.32 6.46 12.27 180.84 2.22 8.68 16 13 N -0.53 -12.17 9.44 -187.06 -1.77 -13.93 16 14 C 0.26 6.60 6.53 42.92 0.28 6.88 16 15 C -0.14 -3.20 4.72 -11.54 -0.05 -3.26 16 16 C -0.15 -2.60 10.04 30.59 0.31 -2.30 16 17 C -0.14 -2.87 10.23 30.59 0.31 -2.56 16 18 C -0.11 -3.57 5.58 30.62 0.17 -3.40 16 19 C -0.12 -4.21 5.94 30.81 0.18 -4.02 16 20 C 0.16 6.84 4.70 86.51 0.41 7.25 16 21 N -0.60 -26.28 2.48 -674.40 -1.67 -27.96 16 22 C -0.34 -16.44 8.47 84.04 0.71 -15.73 16 23 H 0.07 3.14 6.30 -2.91 -0.02 3.12 16 24 C -0.07 -3.84 4.72 84.86 0.40 -3.44 16 25 N -0.95 -55.07 12.47 21.65 0.27 -54.80 16 26 Si 1.10 48.03 29.98 68.60 2.06 50.09 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 29 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 30 H 0.04 1.66 7.63 -2.38 -0.02 1.64 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.80 6.40 -2.39 -0.02 1.79 16 33 H 0.41 12.58 5.95 -92.71 -0.55 12.03 16 34 H 0.18 4.32 6.58 -2.91 -0.02 4.31 16 35 H 0.24 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.13 3.52 6.21 -2.39 -0.01 3.50 16 37 H 0.11 1.92 7.58 -2.39 -0.02 1.90 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.00 0.13 7.82 -2.39 -0.02 0.11 16 46 H 0.05 2.27 6.40 -2.39 -0.02 2.26 16 47 H 0.25 15.04 6.61 -92.71 -0.61 14.43 16 Total: -1.00 -61.34 369.48 3.06 -58.29 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.60 Total: 32.33 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.22 Total: 11.41 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -6.77 Total: -134.12 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.06 Total: 50.09 kcal Total: -61.34 3.06 -58.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994334654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.499 kcal (2) G-P(sol) polarization free energy of solvation -61.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds