Wall clock time and date at job start Tue Mar 31 2020 17:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.70098 * 2 1 4 4 C 1.53626 * 109.66414 * 120.59353 * 2 1 3 5 5 H 1.08992 * 109.43003 * 294.41008 * 4 2 1 6 6 N 1.46501 * 109.63315 * 54.55652 * 4 2 1 7 7 C 1.34777 * 119.99273 * 204.83269 * 6 4 2 8 8 O 1.21549 * 120.00454 * 0.02562 * 7 6 4 9 9 C 1.47835 * 119.99345 * 180.02562 * 7 6 4 10 10 C 1.39969 * 120.94180 * 354.87105 * 9 7 6 11 11 N 1.32136 * 118.91991 * 180.02562 * 10 9 7 12 12 C 1.31878 * 120.97036 * 359.97438 * 11 10 9 13 13 N 1.31855 * 122.09725 * 0.03292 * 12 11 10 14 14 C 1.32161 * 120.96549 * 359.65072 * 13 12 11 15 15 C 1.50701 * 120.53908 * 180.31335 * 14 13 12 16 16 C 1.52994 * 117.49663 * 1.46710 * 15 14 13 17 17 C 1.53000 * 117.49842 * 292.84330 * 15 14 13 18 18 C 1.53043 * 109.23776 * 174.54788 * 4 2 1 19 19 C 1.53045 * 109.53710 * 298.50532 * 18 4 2 20 20 C 1.53191 * 109.31004 * 61.37000 * 19 18 4 21 21 N 1.46928 * 108.77701 * 305.36227 * 20 19 18 22 22 C 1.36936 * 120.63371 * 233.58369 * 21 20 19 23 23 H 1.07991 * 120.00259 * 147.14063 * 22 21 20 24 24 C 1.38810 * 119.99617 * 327.15066 * 22 21 20 25 25 N 1.31618 * 120.00440 * 333.15975 * 24 22 21 26 26 Si 1.86805 * 119.99683 * 153.16626 * 24 22 21 27 27 H 1.48493 * 109.47491 * 89.99812 * 26 24 22 28 28 H 1.48495 * 109.47324 * 329.99075 * 26 24 22 29 29 H 1.48504 * 109.46810 * 209.99555 * 26 24 22 30 30 H 1.08990 * 109.47165 * 180.35796 * 1 2 3 31 31 H 1.09002 * 109.46579 * 300.35539 * 1 2 3 32 32 H 1.08999 * 109.47411 * 60.35097 * 1 2 3 33 33 H 0.96998 * 120.00568 * 24.83561 * 6 4 2 34 34 H 1.07993 * 120.53694 * 0.02562 * 10 9 7 35 35 H 1.07994 * 118.95121 * 180.02562 * 12 11 10 36 36 H 1.09004 * 115.54921 * 147.17111 * 15 14 13 37 37 H 1.08993 * 117.50436 * 359.97438 * 16 15 14 38 38 H 1.09008 * 117.49695 * 145.01842 * 16 15 14 39 39 H 1.08999 * 117.49511 * 214.97465 * 17 15 14 40 40 H 1.08994 * 117.50185 * 0.02562 * 17 15 14 41 41 H 1.09003 * 109.45440 * 178.49411 * 18 4 2 42 42 H 1.08992 * 109.46589 * 58.53059 * 18 4 2 43 43 H 1.08993 * 109.49864 * 301.42042 * 19 18 4 44 44 H 1.09002 * 109.52258 * 181.33661 * 19 18 4 45 45 H 1.09001 * 109.58566 * 185.57233 * 20 19 18 46 46 H 1.09006 * 109.58726 * 65.15200 * 20 19 18 47 47 H 0.96996 * 119.99606 * 355.82675 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2453 5 1 1.7690 -0.1771 2.1386 6 7 1.4591 -2.0769 1.3040 7 6 1.3428 -2.7103 2.4879 8 8 1.7252 -2.1692 3.5069 9 6 0.7501 -4.0634 2.5470 10 6 0.2068 -4.6616 1.4043 11 7 -0.3132 -5.8724 1.5027 12 6 -0.3242 -6.5147 2.6544 13 7 0.1765 -5.9885 3.7549 14 6 0.7219 -4.7847 3.7459 15 6 1.2977 -4.1954 5.0077 16 6 1.2542 -5.0550 6.2726 17 6 0.3225 -3.8492 6.1347 18 6 3.5712 -0.8498 1.1675 19 6 3.9615 -1.6629 -0.0690 20 6 3.4656 -0.9421 -1.3265 21 7 2.0225 -0.6996 -1.1945 22 6 1.1536 -1.1127 -2.1690 23 1 0.1561 -1.4303 -1.9037 24 6 1.5550 -1.1232 -3.4977 25 7 2.4920 -0.2953 -3.9088 26 14 0.7654 -2.3125 -4.7025 27 1 -0.4211 -1.6720 -5.3246 28 1 0.3441 -3.5406 -3.9818 29 1 1.7456 -2.6704 -5.7591 30 1 -0.3633 -1.0275 0.0064 31 1 -0.3632 0.5194 0.8868 32 1 -0.3634 0.5084 -0.8931 33 1 1.1537 -2.5086 0.4908 34 1 0.2124 -4.1421 0.4575 35 1 -0.7571 -7.5031 2.6977 36 1 2.1608 -3.5438 4.8711 37 1 0.8088 -6.0465 6.1923 38 1 2.0888 -4.9691 6.9685 39 1 0.5442 -2.9701 6.7397 40 1 -0.7354 -4.0480 5.9636 41 1 3.9443 -1.3481 2.0623 42 1 4.0067 0.1470 1.0989 43 1 3.5061 -2.6515 -0.0129 44 1 5.0460 -1.7637 -0.1112 45 1 3.6531 -1.5638 -2.2019 46 1 3.9877 0.0088 -1.4325 47 1 2.8591 0.3632 -3.2984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994334656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:55 Heat of formation + Delta-G solvation = 58.141407 kcal Electronic energy + Delta-G solvation = -29523.244054 eV Core-core repulsion = 25707.486234 eV Total energy + Delta-G solvation = -3815.757820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47305 -39.65880 -37.86102 -37.22808 -34.28803 -33.58455 -32.81547 -32.28158 -31.53325 -29.34360 -26.52987 -25.44624 -25.33500 -24.85618 -22.48476 -22.16535 -21.47210 -21.10150 -20.71306 -18.96329 -17.89767 -17.75966 -17.10944 -16.89728 -15.66824 -15.43845 -15.20796 -14.66241 -14.62304 -14.47953 -14.19152 -14.05523 -13.68463 -13.62708 -13.35379 -13.12178 -12.71428 -12.20126 -11.92177 -11.74933 -11.65332 -11.56246 -11.46566 -11.32614 -11.11629 -10.89066 -10.72265 -10.62203 -10.40646 -10.31276 -10.16921 -10.13691 -9.86912 -9.60250 -9.49122 -9.43977 -9.25405 -8.71802 -8.39551 -6.94278 -6.16632 -3.37650 0.32198 0.82541 2.89340 3.28627 3.43631 3.47405 3.51887 3.61577 3.74164 3.89292 3.92144 4.18910 4.48736 4.62951 4.76743 4.90538 4.94538 5.01571 5.06718 5.17482 5.24068 5.39111 5.47115 5.52657 5.54677 5.62369 5.74572 5.74900 5.94220 6.03083 6.06831 6.08008 6.10913 6.17678 6.27152 6.31493 6.41177 6.46453 6.55884 6.72471 6.74555 6.82486 6.91285 6.98634 7.10767 7.73932 7.84736 7.96374 8.34499 8.50060 9.01266 9.74597 10.21409 11.10790 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.004017 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.249873 B = 6968.098099 C = 8101.110570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.135 3.865 5 H 0.080 0.920 6 N -0.692 5.692 7 C 0.563 3.437 8 O -0.537 6.537 9 C -0.233 4.233 10 C 0.188 3.812 11 N -0.524 5.524 12 C 0.313 3.687 13 N -0.526 5.526 14 C 0.261 3.739 15 C -0.118 4.118 16 C -0.165 4.165 17 C -0.148 4.148 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.154 3.846 21 N -0.592 5.592 22 C -0.361 4.361 23 H 0.059 0.941 24 C -0.014 4.014 25 N -0.906 5.906 26 Si 1.061 2.939 27 H -0.294 1.294 28 H -0.290 1.290 29 H -0.287 1.287 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.407 0.593 34 H 0.176 0.824 35 H 0.200 0.800 36 H 0.150 0.850 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.017 0.983 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -7.503 15.124 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.029 3.971 5 H 0.098 0.902 6 N -0.343 5.343 7 C 0.348 3.652 8 O -0.416 6.416 9 C -0.241 4.241 10 C 0.021 3.979 11 N -0.238 5.238 12 C 0.026 3.974 13 N -0.240 5.240 14 C 0.115 3.885 15 C -0.137 4.137 16 C -0.202 4.202 17 C -0.186 4.186 18 C -0.159 4.159 19 C -0.174 4.174 20 C 0.028 3.972 21 N -0.317 5.317 22 C -0.490 4.490 23 H 0.076 0.924 24 C -0.219 4.219 25 N -0.544 5.544 26 Si 0.890 3.110 27 H -0.221 1.221 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.193 0.807 35 H 0.217 0.783 36 H 0.167 0.833 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.035 0.965 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.790 -8.561 14.235 16.843 hybrid contribution 0.159 1.155 0.887 1.465 sum -2.632 -7.406 15.122 17.042 Atomic orbital electron populations 1.21734 0.95315 1.01386 1.00486 1.20835 0.93648 0.93619 0.86696 0.94347 1.21650 0.92860 0.82492 1.00111 0.90225 1.45919 1.61123 1.18521 1.08707 1.17716 0.78952 0.84254 0.84251 1.90681 1.50454 1.66706 1.33739 1.21670 1.07171 0.98703 0.96545 1.23643 0.86563 0.89856 0.97845 1.68464 1.18039 1.08931 1.28365 1.25183 0.90131 0.99288 0.82818 1.68235 1.12151 1.12021 1.31590 1.20962 0.86722 0.87759 0.93092 1.21333 1.03536 1.03613 0.85169 1.23020 1.02250 0.96538 0.98420 1.22853 0.96313 0.99747 0.99658 1.21771 0.95437 1.00535 0.98198 1.22021 0.99112 0.99571 0.96723 1.20921 0.84323 0.96695 0.95243 1.44248 1.02479 1.65274 1.19687 1.19812 0.98097 1.43505 0.87578 0.92367 1.25871 0.99948 0.99940 0.96094 1.70752 1.29867 1.16390 1.37401 0.83607 0.75615 0.75891 0.75863 1.22141 1.21672 1.21274 0.92932 0.94255 0.91641 0.75506 0.80734 0.78338 0.83315 0.87595 0.88468 0.87998 0.89111 0.92770 0.91739 0.92597 0.93166 0.90913 0.96467 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 7.78 37.16 0.29 -2.02 16 2 C 0.16 2.96 3.22 -67.37 -0.22 2.74 16 3 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.13 2.22 2.33 -67.58 -0.16 2.06 16 5 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 6 N -0.69 -10.80 3.43 -54.42 -0.19 -10.99 16 7 C 0.56 8.71 7.72 -12.33 -0.10 8.61 16 8 O -0.54 -9.10 13.20 5.32 0.07 -9.03 16 9 C -0.23 -3.30 5.91 -104.69 -0.62 -3.92 16 10 C 0.19 2.52 10.80 -16.77 -0.18 2.34 16 11 N -0.52 -6.89 10.42 -14.25 -0.15 -7.04 16 12 C 0.31 3.59 12.27 -92.03 -1.13 2.46 16 13 N -0.53 -6.63 9.45 -10.48 -0.10 -6.73 16 14 C 0.26 3.55 6.53 -81.81 -0.53 3.02 16 15 C -0.12 -1.48 4.81 -91.77 -0.44 -1.93 16 16 C -0.17 -1.68 10.04 -26.73 -0.27 -1.94 16 17 C -0.15 -1.59 10.23 -26.73 -0.27 -1.86 16 18 C -0.12 -1.97 5.57 -26.69 -0.15 -2.11 16 19 C -0.13 -2.37 5.93 -26.61 -0.16 -2.53 16 20 C 0.15 3.25 4.82 -3.71 -0.02 3.23 16 21 N -0.59 -12.80 2.41 -164.52 -0.40 -13.20 16 22 C -0.36 -8.76 8.33 -15.06 -0.13 -8.89 16 23 H 0.06 1.40 6.44 -52.49 -0.34 1.06 16 24 C -0.01 -0.37 4.59 -17.43 -0.08 -0.45 16 25 N -0.91 -25.41 12.71 55.49 0.71 -24.71 16 26 Si 1.06 23.59 30.00 -169.99 -5.10 18.49 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.26 7.66 -51.93 -0.40 0.87 16 33 H 0.41 6.53 5.95 -40.82 -0.24 6.29 16 34 H 0.18 2.20 6.57 -52.49 -0.34 1.86 16 35 H 0.20 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.15 2.08 6.05 -51.93 -0.31 1.77 16 37 H 0.11 1.09 7.58 -51.93 -0.39 0.70 16 38 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.74 6.74 -51.93 -0.35 1.39 16 46 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 47 H 0.27 7.67 7.06 -40.82 -0.29 7.39 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -28.26 370.50 -10.53 -38.79 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.80 Total: 10.02 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -4.16 Total: -1.18 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.13 Total: -62.67 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.10 Total: 18.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.26 -10.53 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994334656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.933 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds